Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 7.7e-169 597.0 297 100.0
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 1.3e-94 350.5 286 61.9
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 3.6e-94 349.0 273 63.0
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 2.4e-93 346.3 286 59.8
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 3.8e-91 339.0 286 59.8
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 4.9e-91 338.6 248 64.9
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 4.2e-90 335.5 277 59.9
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.6e-89 333.6 286 59.8
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 1.6e-89 333.6 287 58.5
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 2.1e-89 333.2 240 67.9
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 4.6e-89 332.0 291 56.4
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 4.6e-89 332.0 250 64.4
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 1.3e-88 330.5 233 68.7
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 2.3e-88 329.7 240 66.2
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 2.3e-88 329.7 267 61.8
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 3.0e-88 329.3 252 63.5
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 3.9e-88 328.9 279 59.9
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 6.7e-88 328.2 281 60.9
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 6.7e-88 328.2 281 60.9
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.1e-87 327.4 245 63.3
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 2.5e-87 326.2 293 58.7
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 4.3e-87 325.5 272 61.8
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 5.6e-87 325.1 243 63.4
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 7.4e-87 324.7 267 60.7
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 9.6e-87 324.3 293 54.9
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.6e-86 323.6 272 60.3
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 4.8e-86 322.0 259 60.2
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.1e-85 320.9 237 64.6
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 1.8e-85 320.1 235 65.1
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 1.8e-85 320.1 251 61.8
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 3.1e-85 319.3 237 64.1
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 4.0e-85 318.9 273 60.4
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 5.3e-85 318.5 292 55.1
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 2.6e-84 316.2 278 57.9
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 5.8e-84 315.1 245 64.9
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 5.8e-84 315.1 239 65.3
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 9.9e-84 314.3 237 64.1
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 4.9e-83 312.0 233 61.8
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 8.4e-83 311.2 264 60.2
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 1.1e-82 310.8 283 55.8
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 1.1e-82 310.8 289 55.7
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.4e-82 310.5 278 56.5
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.4e-82 310.5 278 56.5
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.4e-82 310.5 278 56.5
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.4e-82 310.5 238 63.0
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 1.9e-82 310.1 230 64.3
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 2.5e-82 309.7 258 60.9
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 3.2e-82 309.3 283 55.5
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 5.5e-82 308.5 248 59.7
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 5.5e-82 308.5 237 65.0
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 5.5e-82 308.5 231 63.6
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 7.1e-82 308.1 231 65.4
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 7.1e-82 308.1 284 55.6
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 1.2e-81 307.4 284 55.6
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 2.7e-81 306.2 234 61.5
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 2.7e-81 306.2 240 62.1
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 6.0e-81 305.1 231 63.2
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 6.0e-81 305.1 250 59.2
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 7.9e-81 304.7 283 54.8
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 1.0e-80 304.3 274 55.8
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.3e-80 303.9 231 63.6
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 3.9e-80 302.4 286 53.8
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 6.7e-80 301.6 234 60.7
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 1.5e-79 300.4 243 59.3
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.5e-79 300.4 235 62.1
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 2.5e-79 299.7 296 53.7
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 5.6e-79 298.5 288 54.5
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 2.8e-78 296.2 230 65.2
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 8.2e-78 294.7 265 56.2
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 1.4e-77 293.9 232 62.1
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 1.8e-77 293.5 230 64.8
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 3.1e-77 292.7 250 60.8
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 4.0e-77 292.4 255 55.3
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 5.3e-77 292.0 236 58.9
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.2e-76 290.8 234 60.3
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 1.2e-76 290.8 248 59.3
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 2.6e-76 289.7 292 51.0
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 4.5e-76 288.9 233 60.5
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 4.5e-76 288.9 259 55.2
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 7.6e-76 288.1 237 60.8
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.0e-75 287.7 303 51.5
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 1.0e-75 287.7 233 60.1
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.1e-74 284.3 266 51.5
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 1.4e-74 283.9 301 50.5
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.5e-74 283.1 318 48.1
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 3.2e-74 282.7 266 53.4
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 6.7e-72 275.0 282 51.8
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 5.7e-71 271.9 247 55.9
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 7.4e-71 271.6 248 56.5
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 1.1e-69 267.7 230 60.4
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 5.3e-69 265.4 274 52.2
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 5.3e-69 265.4 274 52.2
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 5.3e-69 265.4 274 52.2
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 3.4e-68 262.7 278 49.6
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 5.9e-68 261.9 263 49.0
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 1.7e-67 260.4 242 52.1
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 3.8e-67 259.2 233 57.9
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 8.5e-67 258.1 258 52.3
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 2.1e-65 253.4 235 55.3
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 2.7e-65 253.1 233 55.4
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 5.1e-64 248.8 187 66.3
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.1e-63 247.7 245 53.5
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 3.3e-63 246.1 234 52.1
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 5.7e-63 245.4 213 58.2
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 7.4e-63 245.0 203 59.6
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 6.3e-62 241.9 186 62.4
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.1e-61 241.1 223 54.3
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 4.2e-58 229.2 259 46.7
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 5.5e-58 228.8 397 38.0
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.6e-57 227.3 233 50.2
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 6.1e-57 225.3 250 47.6
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 2.7e-49 199.9 185 56.2
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 1.5e-47 194.1 167 59.9
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 7.4e-47 191.8 159 60.4
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 1.3e-43 181.0 161 52.8
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 4.2e-42 176.0 145 60.7
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 2.1e-41 173.7 151 56.3
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 3.5e-36 156.4 136 58.1
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 1.0e-32 144.8 112 59.8
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 2.3e-32 143.7 242 37.6
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.6e-31 140.2 124 62.9
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 5.7e-31 139.0 78 82.1
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 1.8e-29 134.0 82 72.0
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 4.1e-29 132.9 82 73.2
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 7.7e-28 128.6 83 71.1
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 1.0e-27 128.3 75 76.0
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 8.0e-25 118.6 67 86.6
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 4.0e-24 116.3 83 69.9
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 4.0e-24 116.3 83 69.9
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 4.0e-24 116.3 83 69.9
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 3.2e-21 106.7 82 61.0
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 1.6e-17 94.4 133 40.6
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 9.8e-15 85.1 69 56.5
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 6.4e-14 82.4 75 50.7
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.4e-13 81.3 81 50.6
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 5.4e-13 79.3 86 51.2
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 2.3e-11 73.9 42 76.2
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 3.0e-11 73.6 72 54.2
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 1.1e-10 71.6 52 59.6
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.3e-10 69.7 172 32.0
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 1.2e-09 68.2 42 73.8
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 2.1e-09 67.4 111 40.5
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 4.7e-09 66.2 85 42.4
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 2.3e-08 63.9 74 47.3
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 8.9e-08 62.0 177 26.0


User provided reference genes

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