Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G066 Amborella trichopoda HOM05D003462 ORTHO05D003946 1.1e-40 169.5 83 100.0
ATR0691G062 Amborella trichopoda HOM05D003462 ORTHO05D003946 5.2e-22 107.5 82 61.0
HanXRQChr05g0157891 Helianthus annuus HOM05D003462 ORTHO05D003946 1.5e-21 105.9 82 61.0
ATR0691G201 Amborella trichopoda HOM05D003462 ORTHO05D003946 9.7e-21 103.2 82 59.8
Lsat_1_v5_gn_5_24941 Lactuca sativa HOM05D003462 ORTHO05D003946 1.8e-19 99.0 82 57.3
Lalb_Chr23g0274061 Lupinus albus HOM05D003462 ORTHO05D003946 2.4e-19 98.6 83 57.8
Psat1g028640 Pisum sativum HOM05D003462 ORTHO05D003946 2.4e-19 98.6 83 57.8
AT1G73990 Arabidopsis thaliana HOM05D003462 ORTHO05D003946 3.1e-19 98.2 83 57.8
Medtr2g058970 Medicago truncatula HOM05D003462 ORTHO05D003946 3.1e-19 98.2 83 56.6
CSS0013858 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 4.1e-19 97.8 83 59.0
CSS0048759 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 4.1e-19 97.8 83 59.0
DCAR_010190 Daucus carota HOM05D003462 ORTHO05D003946 7.0e-19 97.1 83 56.6
Ca_02712_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 9.1e-19 96.7 83 56.6
Glyma.17G082700 Glycine max HOM05D003462 ORTHO05D003946 9.1e-19 96.7 83 57.8
Carub.0002s2077 Capsella rubella HOM05D003462 ORTHO05D003946 1.2e-18 96.3 83 55.4
QL10p021514 Quercus lobata HOM05D003462 ORTHO05D003946 1.2e-18 96.3 83 57.8
Cpa.g.sc3.203 Carica papaya HOM05D003462 ORTHO05D003946 1.6e-18 95.9 83 55.4
Thhalv10018225m.g Eutrema salsugineum HOM05D003462 ORTHO05D003946 1.6e-18 95.9 83 55.4
MD06G1207100 Malus domestica HOM05D003462 ORTHO05D003946 1.6e-18 95.9 83 56.6
Peaxi162Scf00017g03131 Petunia axillaris HOM05D003462 ORTHO05D003946 1.6e-18 95.9 83 57.8
VMungo1215G0716 Vigna mungo HOM05D003462 ORTHO05D003946 1.6e-18 95.9 83 57.8
Glyma.04G158100 Glycine max HOM05D003462 ORTHO05D003946 2.0e-18 95.5 83 56.6
Potri.015G047500 Populus trichocarpa HOM05D003462 ORTHO05D003946 2.0e-18 95.5 83 57.8
BcaC08g46829 Brassica carinata HOM05D003462 ORTHO05D003946 2.7e-18 95.1 83 55.4
A07p39860 Brassica napus HOM05D003462 ORTHO05D003946 2.7e-18 95.1 83 55.4
C06p48090 Brassica napus HOM05D003462 ORTHO05D007870 2.7e-18 95.1 83 55.4
BolC6t39846H Brassica oleracea HOM05D003462 ORTHO05D003946 2.7e-18 95.1 83 55.4
BraA07t31532Z Brassica rapa HOM05D003462 ORTHO05D003946 2.7e-18 95.1 83 55.4
Haze_18545 Corylus avellana HOM05D003462 ORTHO05D003946 2.7e-18 95.1 83 55.4
Lsat_1_v5_gn_5_24760 Lactuca sativa HOM05D003462 ORTHO05D003946 2.7e-18 95.1 82 54.9
AL2G33830 Arabidopsis lyrata HOM05D003462 ORTHO05D003946 3.5e-18 94.7 83 54.2
Ciclev10019214m.g Citrus clementina HOM05D003462 ORTHO05D003946 3.5e-18 94.7 83 56.6
Medtr4g112820 Medicago truncatula HOM05D003462 ORTHO05D003946 3.5e-18 94.7 83 57.8
Solyc03g114640.4 Solanum lycopersicum HOM05D003462 ORTHO05D003946 4.5e-18 94.4 83 55.4
Sopen03g033710 Solanum pennellii HOM05D003462 ORTHO05D003946 4.5e-18 94.4 83 55.4
Lj4g0004217 Lotus japonicus HOM05D003462 ORTHO05D003946 5.9e-18 94.0 83 55.4
unitig_22.g6154 Utricularia gibba HOM05D003462 ORTHO05D003946 5.9e-18 94.0 83 55.4
Actinidia18966 Actinidia chinensis HOM05D003462 ORTHO05D003946 7.7e-18 93.6 83 55.4
Aa31LG4G4310 Aethionema arabicum HOM05D003462 ORTHO05D003946 7.7e-18 93.6 83 54.2
CARHR067120 Cardamine hirsuta HOM05D003462 ORTHO05D003946 7.7e-18 93.6 83 55.4
CiPaw.15G117200 Carya illinoinensis HOM05D003462 ORTHO05D003946 7.7e-18 93.6 83 56.6
MELO3C017261.2 Cucumis melo HOM05D003462 ORTHO05D003946 7.7e-18 93.6 83 55.4
Duzib205G0774 Durio zibethinus HOM05D003462 ORTHO05D003946 7.7e-18 93.6 83 57.8
Lj5A138T59 Lonicera japonica HOM05D003462 ORTHO05D003946 7.7e-18 93.6 83 55.4
Lalb_Chr12g0197421 Lupinus albus HOM05D003462 ORTHO05D003946 7.7e-18 93.6 83 54.2
Phvul.003G181400 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 7.7e-18 93.6 83 56.6
Sabra15G0079500 Salix brachista HOM05D003462 ORTHO05D003946 7.7e-18 93.6 83 56.6
Aqoxy3G00588 Aquilegia oxysepala HOM05D003462 ORTHO05D003946 1.0e-17 93.2 83 55.4
arahy.Tifrunner.gnm1.ann1.8883SE Arachis hypogaea HOM05D003462 ORTHO05D003946 1.0e-17 93.2 83 54.2
arahy.Tifrunner.gnm1.ann1.HJ4MYC Arachis hypogaea HOM05D003462 ORTHO05D003946 1.0e-17 93.2 83 54.2
Duzib084G0277 Durio zibethinus HOM05D003462 ORTHO05D003946 1.0e-17 93.2 83 55.4
ECA246G0130 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.0e-17 93.2 83 55.4
Phvul.009G204100 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 1.0e-17 93.2 83 54.2
SGA_v2.0_scaffold171G38939 Striga asiatica HOM05D003462 ORTHO05D003946 1.0e-17 93.2 82 56.1
THA.LOC104812124 Tarenaya hassleriana HOM05D003462 ORTHO05D003946 1.0e-17 93.2 83 56.6
TPR.G15309 Trifolium pratense HOM05D003462 ORTHO05D003946 1.0e-17 93.2 83 55.4
Manes.01G024300 Manihot esculenta HOM05D003462 ORTHO05D003946 1.3e-17 92.8 83 54.2
Sp5g29190 Schrenkiella parvula HOM05D003462 ORTHO05D003946 1.3e-17 92.8 83 54.2
Actinidia35059 Actinidia chinensis HOM05D003462 ORTHO05D003946 1.7e-17 92.4 83 54.2
CAN.G982.30 Capsicum annuum HOM05D003462 ORTHO05D003946 1.7e-17 92.4 83 55.4
ECA246G4431 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.7e-17 92.4 82 52.4
Gohir.A09G244100 Gossypium hirsutum HOM05D003462 ORTHO05D003946 1.7e-17 92.4 83 54.2
Rhsim12G0146800 Rhododendron simsii HOM05D003462 ORTHO05D003946 1.7e-17 92.4 83 54.2
Ca_21746_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 2.2e-17 92.0 83 54.2
ClCG06G015340 Citrullus lanatus HOM05D003462 ORTHO05D003946 2.2e-17 92.0 83 54.2
HanXRQChr05g0157841 Helianthus annuus HOM05D003462 ORTHO05D003946 2.2e-17 92.0 83 55.4
Zm00001eb189850 Zea mays HOM05D003462 ORTHO05D003946 2.2e-17 92.0 83 51.8
COL.COLO4_28809 Corchorus olitorius HOM05D003462 ORTHO05D003946 2.9e-17 91.7 83 54.2
Glyma.06G207100 Glycine max HOM05D003462 ORTHO05D003946 2.9e-17 91.7 83 54.2
Medtr4g112860 Medicago truncatula HOM05D003462 ORTHO05D003946 2.9e-17 91.7 83 54.2
Nitab4.5_0002805g0140 Nicotiana tabacum HOM05D003462 ORTHO05D003946 2.9e-17 91.7 83 55.4
SMO147G0360 Selaginella moellendorffii HOM05D003462 ORTHO05D003946 2.9e-17 91.7 82 53.7
Cc04_g07970 Coffea canephora HOM05D003462 ORTHO05D003946 3.8e-17 91.3 83 55.4
Eucgr.K02831 Eucalyptus grandis HOM05D003462 ORTHO05D003946 3.8e-17 91.3 83 53.0
Hma1.2p1_0744F.1_g211701 Hydrangea macrophylla HOM05D003462 ORTHO05D003946 3.8e-17 91.3 83 53.0
MD14G1217600 Malus domestica HOM05D003462 ORTHO05D003946 3.8e-17 91.3 83 54.2
Sed0016449 Sechium edule HOM05D003462 ORTHO05D003946 3.8e-17 91.3 83 54.2
Thecc.03G111900 Theobroma cacao HOM05D003462 ORTHO05D003946 3.8e-17 91.3 83 54.2
vmacro16468 Vaccinium macrocarpon HOM05D003462 ORTHO05D003946 3.8e-17 91.3 83 54.2
GSVIVG01008179001 Vitis vinifera HOM05D003462 ORTHO05D003946 3.8e-17 91.3 83 54.2
Pp3c3_13550 Physcomitrium patens HOM05D003462 ORTHO05D003946 5.0e-17 90.9 82 54.9
Pp3c3_13555 Physcomitrium patens HOM05D003462 ORTHO05D003946 5.0e-17 90.9 82 54.9
CDE06G1115 Ceratophyllum demersum HOM05D003462 ORTHO05D003946 6.5e-17 90.5 83 55.4
Nn4g23600 Nelumbo nucifera HOM05D003462 ORTHO05D003946 6.5e-17 90.5 83 54.2
PSO017G3345 Papaver somniferum HOM05D003462 ORTHO05D003946 6.5e-17 90.5 83 54.2
PSO478G2116 Papaver somniferum HOM05D003462 ORTHO05D003946 6.5e-17 90.5 83 54.2
HPP92_017961 Vanilla planifolia HOM05D003462 ORTHO05D003946 6.5e-17 90.5 83 56.6
Lsat_1_v5_gn_5_24441 Lactuca sativa HOM05D003462 ORTHO05D003946 8.5e-17 90.1 83 53.0
Oeu031926.1 Olea europaea HOM05D003462 ORTHO05D003946 8.5e-17 90.1 83 54.2
SalBow1G8183 Salvia bowleyana HOM05D003462 ORTHO05D003946 8.5e-17 90.1 83 54.2
MSTRG.4505 Avicennia marina HOM05D003462 ORTHO05D003946 1.1e-16 89.7 83 54.2
Gohir.D09G245000 Gossypium hirsutum HOM05D003462 ORTHO05D003946 1.1e-16 89.7 83 53.0
TPR.G2020 Trifolium pratense HOM05D003462 ORTHO05D003946 1.1e-16 89.7 83 53.0
Atru.chr9.644 Acer truncatum HOM05D003462 ORTHO05D003946 1.5e-16 89.4 83 51.8
Gorai.006G269300 Gossypium raimondii HOM05D003462 ORTHO05D003946 1.9e-16 89.0 83 51.8
Lj1g0015888 Lotus japonicus HOM05D003462 ORTHO05D003946 1.9e-16 89.0 83 51.8
RcHm_v2.0_Chr7g0184041 Rosa chinensis HOM05D003462 ORTHO05D003946 1.9e-16 89.0 83 53.0
TWI81G0217 Tripterygium wilfordii HOM05D003462 ORTHO05D003946 1.9e-16 89.0 83 53.0
PGR083G2784 Punica granatum HOM05D003462 ORTHO05D003946 2.5e-16 88.6 83 51.8
TPR.G35192 Trifolium pratense HOM05D003462 ORTHO05D003946 2.5e-16 88.6 78 57.7
AagrBONN_evm.TU.Sc2ySwM_117.3359 Anthoceros agrestis HOM05D003462 ORTHO05D003946 3.2e-16 88.2 82 53.7
arahy.Tifrunner.gnm1.ann1.MSU6B8 Arachis hypogaea HOM05D003462 ORTHO05D003946 3.2e-16 88.2 83 51.8
CSS0029569 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 3.2e-16 88.2 83 53.0
SEGI_03657 Sequoiadendron giganteum HOM05D003462 ORTHO05D003946 3.2e-16 88.2 82 51.2
EL10Ac5g11203 Beta vulgaris HOM05D003462 ORTHO05D003946 4.2e-16 87.8 83 55.4
QL10p021433 Quercus lobata HOM05D003462 ORTHO05D003946 4.2e-16 87.8 83 53.0
TAR371G0026 Trochodendron aralioides HOM05D003462 ORTHO05D003946 4.2e-16 87.8 83 53.0
GSVIVG01008177001 Vitis vinifera HOM05D003462 ORTHO05D003946 4.2e-16 87.8 83 53.0
Actinidia01422 Actinidia chinensis HOM05D003462 ORTHO05D003946 5.5e-16 87.4 83 51.8
Migut.D01481 Erythranthe guttata HOM05D003462 ORTHO05D003946 5.5e-16 87.4 83 53.0
CSS0035896 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 7.2e-16 87.0 83 51.8
AUR62032156 Chenopodium quinoa HOM05D003462 ORTHO05D003946 7.2e-16 87.0 83 51.8
Hund09973 Selenicereus undatus HOM05D003462 ORTHO05D003946 7.2e-16 87.0 83 51.8
arahy.Tifrunner.gnm1.ann1.V9YTQ9 Arachis hypogaea HOM05D003462 ORTHO05D003946 9.4e-16 86.7 83 50.6
FvH4_5g13110 Fragaria vesca HOM05D003462 ORTHO05D003946 9.4e-16 86.7 83 51.8
FAN18G1062 Fragaria x ananassa HOM05D003462 ORTHO05D003946 9.4e-16 86.7 83 51.8
CSS0043842 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 2.1e-15 85.5 83 50.6
CANSAT80G0024 Cannabis sativa HOM05D003462 ORTHO05D003946 2.1e-15 85.5 83 51.8
Sc24g0002690 Simmondsia chinensis HOM05D003462 ORTHO05D003946 3.6e-15 84.7 83 53.0
Mapoly0008s0093 Marchantia polymorpha HOM05D003462 ORTHO05D003946 4.7e-15 84.3 82 51.2
Hund02540 Selenicereus undatus HOM05D003462 ORTHO05D003946 8.0e-15 83.6 83 51.8
Migut.D01480 Erythranthe guttata HOM05D003462 ORTHO05D003946 1.0e-14 83.2 83 53.0
Rhsim08G0140500 Rhododendron simsii HOM05D003462 ORTHO05D003946 1.0e-14 83.2 83 55.4
MSTRG.9572 Avicennia marina HOM05D003462 ORTHO05D003946 1.4e-14 82.8 83 50.6
HanXRQChr05g0157881 Helianthus annuus HOM05D003462 ORTHO05D003946 1.8e-14 82.4 63 61.9
AUR62036912 Chenopodium quinoa HOM05D003462 ORTHO05D003946 8.8e-14 80.1 83 51.8
AUR62044517 Chenopodium quinoa HOM05D003462 ORTHO05D003946 8.8e-14 80.1 83 51.8
SalBow1G4644 Salvia bowleyana HOM05D003462 ORTHO05D003946 8.8e-14 80.1 83 48.2
Nitab4.5_0000646g0270 Nicotiana tabacum HOM05D003462 ORTHO05D003946 1.2e-13 79.7 76 52.6
CSS0043104 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.5e-13 79.3 83 51.8
FAN08G2364 Fragaria x ananassa HOM05D003462 ORTHO05D003946 3.4e-13 78.2 69 52.2
CSS0043461 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 7.5e-13 77.0 83 45.8
CSS0028580 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 9.8e-13 76.6 83 50.6
RcHm_v2.0_Chr2g0126491 Rosa chinensis HOM05D003462 ORTHO05D003946 1.8e-11 72.4 62 51.6
Cre10.g444550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 5.4e-11 70.9 82 41.5
Medtr4g134260 Medicago truncatula HOM05D003462 ORTHO05D003946 3.5e-10 68.2 66 53.0
AagrBONN_evm.TU.Sc2ySwM_368.89 Anthoceros agrestis HOM05D003462 ORTHO05D003946 5.9e-10 67.4 63 52.4
Actinidia27195 Actinidia chinensis HOM05D003462 ORTHO05D003946 7.7e-10 67.0 52 59.6
Medtr8g022470 Medicago truncatula HOM05D003462 ORTHO05D003946 5.0e-09 64.3 50 60.0
Medtr4g114810 Medicago truncatula HOM05D003462 ORTHO05D003946 2.1e-07 58.9 42 64.3
Medtr8g022500 Medicago truncatula HOM05D003462 ORTHO05D003946 6.1e-07 57.4 49 55.1
AUR62039689 Chenopodium quinoa HOM05D003462 ORTHO05D003946 6.8e-06 53.9 85 40.0


User provided reference genes

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