Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0559G031 Amborella trichopoda HOM05D003043 ORTHO05D062579 3.7e-61 238.4 160 100.0
ATR0559G340 Amborella trichopoda HOM05D003043 ORTHO05D003652 2.1e-24 116.3 91 63.7
MBI14_g08021_MAGBIO Magnolia biondii HOM05D003043 ORTHO05D003652 2.9e-21 105.9 75 68.0
Nn2g11182 Nelumbo nucifera HOM05D003043 ORTHO05D003652 4.2e-20 102.1 77 66.2
Duzib170G0098 Durio zibethinus HOM05D003043 ORTHO05D003652 1.2e-19 100.5 78 60.3
PSO063G2647 Papaver somniferum HOM05D003043 ORTHO05D003652 1.6e-19 100.1 71 64.8
PSO339G4558 Papaver somniferum HOM05D003043 ORTHO05D003652 1.6e-19 100.1 71 64.8
Sc12g0001270 Simmondsia chinensis HOM05D003043 ORTHO05D003652 2.7e-19 99.4 76 65.8
TAR623G1400 Trochodendron aralioides HOM05D003043 ORTHO05D003652 2.7e-19 99.4 74 63.5
TAR636G1806 Trochodendron aralioides HOM05D003043 ORTHO05D003652 2.7e-19 99.4 77 66.2
Dinv42985 Davidia involucrata HOM05D003043 ORTHO05D003652 4.6e-19 98.6 76 65.8
Dinv43114 Davidia involucrata HOM05D003043 ORTHO05D003652 4.6e-19 98.6 76 65.8
CDE04G0292 Ceratophyllum demersum HOM05D003043 ORTHO05D003652 6.0e-19 98.2 75 62.7
COL.COLO4_18570 Corchorus olitorius HOM05D003043 ORTHO05D003652 6.0e-19 98.2 71 62.0
Nitab4.5_0000463g0160 Nicotiana tabacum HOM05D003043 ORTHO05D003652 6.0e-19 98.2 75 61.3
Eucgr.B02312 Eucalyptus grandis HOM05D003043 ORTHO05D003652 7.9e-19 97.8 74 60.8
PSO513G0035 Papaver somniferum HOM05D003043 ORTHO05D003652 7.9e-19 97.8 74 63.5
arahy.Tifrunner.gnm1.ann1.0C0BSE Arachis hypogaea HOM05D003043 ORTHO05D003652 1.0e-18 97.4 75 60.0
arahy.Tifrunner.gnm1.ann1.PZH5ZT Arachis hypogaea HOM05D003043 ORTHO05D003652 1.0e-18 97.4 75 60.0
CAN.G394.74 Capsicum annuum HOM05D003043 ORTHO05D003652 1.0e-18 97.4 89 53.9
Cpa.g.sc81.103 Carica papaya HOM05D003043 ORTHO05D003652 1.0e-18 97.4 89 52.8
PSO339G0816 Papaver somniferum HOM05D003043 ORTHO05D003652 1.0e-18 97.4 74 62.2
Aqoxy2G02292 Aquilegia oxysepala HOM05D003043 ORTHO05D003652 1.3e-18 97.1 75 61.3
QL01p030425 Quercus lobata HOM05D003043 ORTHO05D003652 1.3e-18 97.1 75 62.7
Solyc06g076360.4 Solanum lycopersicum HOM05D003043 ORTHO05D003652 1.3e-18 97.1 89 53.9
Sopen06g032770 Solanum pennellii HOM05D003043 ORTHO05D003652 1.3e-18 97.1 89 53.9
PGSC0003DMG400030420 Solanum tuberosum HOM05D003043 ORTHO05D003652 1.3e-18 97.1 89 53.9
MSTRG.21224 Avicennia marina HOM05D003043 ORTHO05D003652 1.8e-18 96.7 75 62.7
CSS0005170 Camellia sinensis var. sinensis HOM05D003043 ORTHO05D003652 2.3e-18 96.3 77 64.9
CSS0026296 Camellia sinensis var. sinensis HOM05D003043 ORTHO05D003652 2.3e-18 96.3 76 64.5
CANSAT54G1677 Cannabis sativa HOM05D003043 ORTHO05D003652 2.3e-18 96.3 76 63.2
Cfa011547 Carpinus fangiana HOM05D003043 ORTHO05D003652 2.3e-18 96.3 74 63.5
CiPaw.14G065900 Carya illinoinensis HOM05D003043 ORTHO05D003652 2.3e-18 96.3 78 60.3
Haze_24151 Corylus avellana HOM05D003043 ORTHO05D003652 2.3e-18 96.3 74 63.5
Haze_24153 Corylus avellana HOM05D003043 ORTHO05D003652 2.3e-18 96.3 74 63.5
Gohir.D07G104400 Gossypium hirsutum HOM05D003043 ORTHO05D003652 2.3e-18 96.3 77 62.3
Gorai.001G112300 Gossypium raimondii HOM05D003043 ORTHO05D003652 2.3e-18 96.3 77 62.3
Nitab4.5_0006916g0010 Nicotiana tabacum HOM05D003043 ORTHO05D003652 2.3e-18 96.3 75 60.0
Oeu045617.1 Olea europaea HOM05D003043 ORTHO05D003652 2.3e-18 96.3 75 61.3
Prupe.6G071100 Prunus persica HOM05D003043 ORTHO05D003652 2.3e-18 96.3 76 63.2
Dinv34276 Davidia involucrata HOM05D003043 ORTHO05D003652 3.0e-18 95.9 77 63.6
Gohir.A13G226800 Gossypium hirsutum HOM05D003043 ORTHO05D003652 3.0e-18 95.9 77 62.3
Gohir.D13G232100 Gossypium hirsutum HOM05D003043 ORTHO05D003652 3.0e-18 95.9 77 62.3
Gorai.013G262900 Gossypium raimondii HOM05D003043 ORTHO05D003652 3.0e-18 95.9 77 62.3
Potri.001G072800 Populus trichocarpa HOM05D003043 ORTHO05D003652 3.0e-18 95.9 75 60.0
Sabra01G0051400 Salix brachista HOM05D003043 ORTHO05D003652 3.0e-18 95.9 75 60.0
AUR62001746 Chenopodium quinoa HOM05D003043 ORTHO05D003652 3.9e-18 95.5 74 59.5
AUR62020025 Chenopodium quinoa HOM05D003043 ORTHO05D003652 3.9e-18 95.5 74 59.5
FAN08G1552 Fragaria x ananassa HOM05D003043 ORTHO05D003652 3.9e-18 95.5 76 63.2
FAN13G2534 Fragaria x ananassa HOM05D003043 ORTHO05D003652 3.9e-18 95.5 76 63.2
MD03G1086500 Malus domestica HOM05D003043 ORTHO05D003652 3.9e-18 95.5 76 63.2
RcHm_v2.0_Chr7g0222311 Rosa chinensis HOM05D003043 ORTHO05D003652 3.9e-18 95.5 77 62.3
CDE06G2097 Ceratophyllum demersum HOM05D003043 ORTHO05D003652 5.1e-18 95.1 75 60.0
FvH4_5g29410 Fragaria vesca HOM05D003043 ORTHO05D003652 5.1e-18 95.1 76 63.2
FAN04G2806 Fragaria x ananassa HOM05D003043 ORTHO05D003652 5.1e-18 95.1 76 63.2
FAN18G0944 Fragaria x ananassa HOM05D003043 ORTHO05D003652 5.1e-18 95.1 76 63.2
Aa31LG4G15670 Aethionema arabicum HOM05D003043 ORTHO05D003652 6.7e-18 94.7 74 62.2
Cc01_g13290 Coffea canephora HOM05D003043 ORTHO05D003652 6.7e-18 94.7 75 60.0
Gohir.A07G100300 Gossypium hirsutum HOM05D003043 ORTHO05D003652 6.7e-18 94.7 77 61.0
Hma1.2p1_0615F.1_g189710 Hydrangea macrophylla HOM05D003043 ORTHO05D003652 6.7e-18 94.7 77 62.3
Manes.01G169900 Manihot esculenta HOM05D003043 ORTHO05D003652 6.7e-18 94.7 77 59.7
BcaB01g00984 Brassica carinata HOM05D003043 ORTHO05D003652 8.7e-18 94.4 74 60.8
CARHR154930 Cardamine hirsuta HOM05D003043 ORTHO05D003652 8.7e-18 94.4 74 62.2
Gohir.D05G093900 Gossypium hirsutum HOM05D003043 ORTHO05D003652 8.7e-18 94.4 77 61.0
Gorai.009G096900 Gossypium raimondii HOM05D003043 ORTHO05D003652 8.7e-18 94.4 77 61.0
TWI75G1391 Tripterygium wilfordii HOM05D003043 ORTHO05D003652 8.7e-18 94.4 89 52.8
Ah.15g098580 Amaranthus hybridus HOM05D003043 ORTHO05D003652 1.1e-17 94.0 74 58.1
Ciclev10027835m.g Citrus clementina HOM05D003043 ORTHO05D003652 1.1e-17 94.0 74 58.1
MD11G1095600 Malus domestica HOM05D003043 ORTHO05D003652 1.1e-17 94.0 76 61.8
THA.LOC104810757 Tarenaya hassleriana HOM05D003043 ORTHO05D003652 1.1e-17 94.0 74 58.1
AL5G25720 Arabidopsis lyrata HOM05D003043 ORTHO05D003652 1.5e-17 93.6 74 62.2
AT3G46740 Arabidopsis thaliana HOM05D003043 ORTHO05D003652 1.5e-17 93.6 74 62.2
BcaC01g01890 Brassica carinata HOM05D003043 ORTHO05D003652 1.5e-17 93.6 74 62.2
A06p20820 Brassica napus HOM05D003043 ORTHO05D003652 1.5e-17 93.6 74 62.2
C03p70910 Brassica napus HOM05D003043 ORTHO05D003652 1.5e-17 93.6 74 62.2
BolC3t19366H Brassica oleracea HOM05D003043 ORTHO05D003652 1.5e-17 93.6 74 62.2
BraA06t25157Z Brassica rapa HOM05D003043 ORTHO05D003652 1.5e-17 93.6 74 62.2
Carub.0005s1300 Capsella rubella HOM05D003043 ORTHO05D003652 1.5e-17 93.6 74 62.2
Sp5g14980 Schrenkiella parvula HOM05D003043 ORTHO05D003652 1.5e-17 93.6 74 62.2
Thhalv10002403m.g Eutrema salsugineum HOM05D003043 ORTHO05D003652 1.9e-17 93.2 74 60.8
Gohir.A05G093400 Gossypium hirsutum HOM05D003043 ORTHO05D003652 1.9e-17 93.2 77 59.7
PGR102G2695 Punica granatum HOM05D003043 ORTHO05D003652 1.9e-17 93.2 74 59.5
ClCG03G001310 Citrullus lanatus HOM05D003043 ORTHO05D003652 2.5e-17 92.8 77 59.7
Peaxi162Scf00481g00322 Petunia axillaris HOM05D003043 ORTHO05D003652 2.5e-17 92.8 75 58.7
Potri.003G158100 Populus trichocarpa HOM05D003043 ORTHO05D003652 2.5e-17 92.8 75 58.7
Sabra03G0114700 Salix brachista HOM05D003043 ORTHO05D003652 2.5e-17 92.8 75 58.7
SalBow1G3349 Salvia bowleyana HOM05D003043 ORTHO05D003652 2.5e-17 92.8 74 59.5
SalBow6G3018 Salvia bowleyana HOM05D003043 ORTHO05D003652 2.5e-17 92.8 74 59.5
Actinidia33774 Actinidia chinensis HOM05D003043 ORTHO05D003652 3.3e-17 92.4 69 62.3
BcaB02g10711 Brassica carinata HOM05D003043 ORTHO05D003652 3.3e-17 92.4 75 60.0
BcaC09g49767 Brassica carinata HOM05D003043 ORTHO05D003652 3.3e-17 92.4 71 63.4
A01p26080 Brassica napus HOM05D003043 ORTHO05D003652 3.3e-17 92.4 71 63.4
C01p33160 Brassica napus HOM05D003043 ORTHO05D003652 3.3e-17 92.4 71 63.4
BraA01t02526Z Brassica rapa HOM05D003043 ORTHO05D003652 3.3e-17 92.4 71 63.4
arahy.Tifrunner.gnm1.ann1.HN9X0L Arachis hypogaea HOM05D003043 ORTHO05D003652 4.3e-17 92.0 75 54.7
Lj3g0007907 Lotus japonicus HOM05D003043 ORTHO05D003652 4.3e-17 92.0 74 52.7
RcHm_v2.0_Chr5g0052291 Rosa chinensis HOM05D003043 ORTHO05D003652 4.3e-17 92.0 77 57.1
Thecc.09G316500 Theobroma cacao HOM05D003043 ORTHO05D003652 5.6e-17 91.7 77 59.7
HPP92_010725 Vanilla planifolia HOM05D003043 ORTHO05D003652 5.6e-17 91.7 89 51.7
Medtr4g064780 Medicago truncatula HOM05D003043 ORTHO05D003652 7.4e-17 91.3 94 50.0
unitig_747.g22046 Utricularia gibba HOM05D003043 ORTHO05D003652 9.6e-17 90.9 74 59.5
Ca_20619_v3 Cicer arietinum L. HOM05D003043 ORTHO05D003652 1.3e-16 90.5 93 49.5
Migut.D00882 Erythranthe guttata HOM05D003043 ORTHO05D003652 1.3e-16 90.5 74 58.1
TWI79G0647 Tripterygium wilfordii HOM05D003043 ORTHO05D003652 1.3e-16 90.5 75 56.0
Actinidia26677 Actinidia chinensis HOM05D003043 ORTHO05D003652 1.6e-16 90.1 69 60.9
MELO3C020610.2 Cucumis melo HOM05D003043 ORTHO05D003652 1.6e-16 90.1 75 54.7
Rhsim13G0077600 Rhododendron simsii HOM05D003043 ORTHO05D003652 1.6e-16 90.1 74 55.4
Hund04925 Selenicereus undatus HOM05D003043 ORTHO05D003652 1.6e-16 90.1 78 56.4
SGA_v2.0_scaffold66G22395 Striga asiatica HOM05D003043 ORTHO05D003652 1.6e-16 90.1 91 49.5
VMungo1080G0243 Vigna mungo HOM05D003043 ORTHO05D003652 1.6e-16 90.1 74 56.8
arahy.Tifrunner.gnm1.ann1.119CG3 Arachis hypogaea HOM05D003043 ORTHO05D003652 2.8e-16 89.4 75 53.3
THA.LOC104799432 Tarenaya hassleriana HOM05D003043 ORTHO05D003652 2.8e-16 89.4 74 55.4
Glyma.13G338700 Glycine max HOM05D003043 ORTHO05D003652 3.7e-16 89.0 75 54.7
Glyma.15G035600 Glycine max HOM05D003043 ORTHO05D003652 3.7e-16 89.0 75 54.7
Lalb_Chr14g0372011 Lupinus albus HOM05D003043 ORTHO05D003652 3.7e-16 89.0 75 54.7
Sed0022880 Sechium edule HOM05D003043 ORTHO05D003652 3.7e-16 89.0 78 53.8
Phvul.L007943 Phaseolus vulgaris HOM05D003043 ORTHO05D003652 4.8e-16 88.6 74 55.4
TPR.G23580 Trifolium pratense HOM05D003043 ORTHO05D003652 4.8e-16 88.6 93 49.5
Atru.chr3.3955 Acer truncatum HOM05D003043 ORTHO05D003652 6.2e-16 88.2 75 53.3
SGA_v2.0_scaffold69G23225 Striga asiatica HOM05D003043 ORTHO05D003652 1.1e-15 87.4 78 50.0
SHI02287 Sapria himalayana HOM05D003043 ORTHO05D003652 1.4e-15 87.0 78 52.6
Lalb_Chr22g0352461 Lupinus albus HOM05D003043 ORTHO05D003652 1.8e-15 86.7 75 52.0
CsaV3_1G034510 Cucumis sativus L. HOM05D003043 ORTHO05D003652 3.1e-15 85.9 93 46.2
Ah.08g219900 Amaranthus hybridus HOM05D003043 ORTHO05D003652 4.0e-15 85.5 74 51.4
AL8G35700 Arabidopsis lyrata HOM05D003043 ORTHO05D003652 4.0e-15 85.5 77 53.2
BcaB05g23534 Brassica carinata HOM05D003043 ORTHO05D003652 4.0e-15 85.5 74 56.8
FvH4_3g28760 Fragaria vesca HOM05D003043 ORTHO05D003652 4.0e-15 85.5 78 51.3
FAN11G2976 Fragaria x ananassa HOM05D003043 ORTHO05D003652 4.0e-15 85.5 78 51.3
FAN16G2241 Fragaria x ananassa HOM05D003043 ORTHO05D003652 4.0e-15 85.5 78 51.3
Ca_01305_v3 Cicer arietinum L. HOM05D003043 ORTHO05D003652 5.3e-15 85.1 75 46.7
Psat7g209800 Pisum sativum HOM05D003043 ORTHO05D003652 5.3e-15 85.1 81 49.4
TPR.G28610 Trifolium pratense HOM05D003043 ORTHO05D003652 6.9e-15 84.7 75 45.3
vmacro03033 Vaccinium macrocarpon HOM05D003043 ORTHO05D003652 6.9e-15 84.7 74 52.7
EL10Ac7g16059 Beta vulgaris HOM05D003043 ORTHO05D003652 1.2e-14 84.0 74 52.7
HanXRQChr01g0010431 Helianthus annuus HOM05D003043 ORTHO05D003652 1.5e-14 83.6 71 53.5
Lj2A1068G37 Lonicera japonica HOM05D003043 ORTHO05D003652 1.5e-14 83.6 101 49.5
Medtr2g097700 Medicago truncatula HOM05D003043 ORTHO05D003652 1.5e-14 83.6 75 44.0
TPR.G6840 Trifolium pratense HOM05D003043 ORTHO05D003652 3.4e-14 82.4 98 43.9
ECA248G3037 Erigeron canadensis HOM05D003043 ORTHO05D003652 4.5e-14 82.0 77 50.6
HanXRQChr04g0109241 Helianthus annuus HOM05D003043 ORTHO05D003652 4.5e-14 82.0 75 49.3
FAN21G2726 Fragaria x ananassa HOM05D003043 ORTHO05D003652 7.6e-14 81.3 84 47.6
Os03g0271200 Oryza sativa ssp. japonica HOM05D003043 ORTHO05D003652 2.9e-13 79.3 80 46.2
Lsat_1_v5_gn_5_169481 Lactuca sativa HOM05D003043 ORTHO05D003652 3.8e-13 79.0 77 49.4
A10p16480 Brassica napus HOM05D003043 ORTHO05D003652 4.9e-13 78.6 78 50.0
BraA10t43731Z Brassica rapa HOM05D003043 ORTHO05D003652 4.9e-13 78.6 78 48.7
BcaC04g19797 Brassica carinata HOM05D003043 ORTHO05D003652 6.5e-13 78.2 78 50.0
C09p51560 Brassica napus HOM05D003043 ORTHO05D003652 6.5e-13 78.2 78 50.0
Zm00001eb397790 Zea mays HOM05D003043 ORTHO05D003652 6.5e-13 78.2 77 48.1
Zm00001eb012140 Zea mays HOM05D003043 ORTHO05D003652 1.1e-12 77.4 80 46.2
Carub.0008s1993 Capsella rubella HOM05D003043 ORTHO05D003652 7.1e-12 74.7 77 45.5
Lj2C969T9 Lonicera japonica HOM05D003043 ORTHO05D003652 1.6e-11 73.6 79 49.4
BcaB08g36270 Brassica carinata HOM05D003043 ORTHO05D003652 2.1e-11 73.2 72 51.4
TPR.G39921 Trifolium pratense HOM05D003043 ORTHO05D003652 7.9e-11 71.2 92 40.2
DCAR_007432 Daucus carota HOM05D003043 ORTHO05D003652 1.0e-10 70.9 79 41.8
DCAR_005948 Daucus carota HOM05D003043 ORTHO05D003652 1.8e-10 70.1 72 47.2
SMO184G0008 Selaginella moellendorffii HOM05D003043 ORTHO05D003652 3.9e-10 68.9 91 39.6
Migut.C00447 Erythranthe guttata HOM05D003043 ORTHO05D003652 1.1e-09 67.4 81 35.8
Migut.J01162 Erythranthe guttata HOM05D003043 ORTHO05D003652 1.1e-09 67.4 81 35.8
Mapoly0040s0008 Marchantia polymorpha HOM05D003043 ORTHO05D003652 2.5e-09 66.2 75 37.3
AagrBONN_evm.TU.Sc2ySwM_362.1395 Anthoceros agrestis HOM05D003043 ORTHO05D003652 5.7e-09 65.1 75 34.7
Pp3c5_23090 Physcomitrium patens HOM05D003043 ORTHO05D003652 1.3e-08 63.9 75 36.0
Pp3c6_10010 Physcomitrium patens HOM05D003043 ORTHO05D003652 4.8e-08 62.0 75 33.3
Pp3c7_23430 Physcomitrium patens HOM05D003043 ORTHO05D003652 4.8e-08 62.0 75 32.0
SMO340G0290 Selaginella moellendorffii HOM05D003043 ORTHO05D003652 4.8e-08 62.0 85 38.8
Actinidia08540 Actinidia chinensis HOM05D003043 ORTHO05D003652 1.4e-07 60.5 72 44.4
Oeu053885.1 Olea europaea HOM05D003043 ORTHO05D003652 4.1e-07 58.9 41 65.9
ECA247G2855 Erigeron canadensis HOM05D003043 ORTHO05D003652 1.2e-06 57.4 45 60.0
TPR.G40589 Trifolium pratense HOM05D003043 ORTHO05D003652 1.2e-06 57.4 76 40.8
GSVIVG01024913001 Vitis vinifera HOM05D003043 ORTHO05D003652 1.5e-06 57.0 42 69.0


User provided reference genes

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