Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0554G001 Amborella trichopoda HOM05D000732 ORTHO05D038301 4.8e-61 237.7 121 100.0
ATR0552G001 Amborella trichopoda HOM05D000732 ORTHO05D038301 9.7e-54 213.4 112 97.3
TAR369G0294 Trochodendron aralioides HOM05D000732 ORTHO05D007766 1.7e-18 96.3 119 51.3
CDE06G0908 Ceratophyllum demersum HOM05D000732 ORTHO05D007766 2.5e-17 92.4 115 49.6
MBI03_g15322_MAGBIO Magnolia biondii HOM05D000732 ORTHO05D007766 3.3e-17 92.0 123 51.2
GSVIVG01015437001 Vitis vinifera HOM05D000732 ORTHO05D007766 8.1e-16 87.4 118 48.3
MD15G1190300 Malus domestica HOM05D000732 ORTHO05D007766 1.1e-15 87.0 114 50.0
Actinidia20336 Actinidia chinensis HOM05D000732 ORTHO05D007766 1.4e-15 86.7 121 45.5
Cfa003294 Carpinus fangiana HOM05D000732 ORTHO05D007766 1.8e-15 86.3 118 45.8
CiPaw.03G235500 Carya illinoinensis HOM05D000732 ORTHO05D007766 1.8e-15 86.3 118 47.5
CDE07G0191 Ceratophyllum demersum HOM05D000732 ORTHO05D007766 1.8e-15 86.3 115 47.8
Dinv36601 Davidia involucrata HOM05D000732 ORTHO05D007766 1.8e-15 86.3 120 48.3
Prupe.7G226800 Prunus persica HOM05D000732 ORTHO05D007766 1.8e-15 86.3 114 50.0
MD02G1062500 Malus domestica HOM05D000417 ORTHO05D007766 2.3e-15 85.9 112 49.1
Actinidia09400 Actinidia chinensis HOM05D000732 ORTHO05D007766 4.0e-15 85.1 120 45.8
arahy.Tifrunner.gnm1.ann1.3B9WQN Arachis hypogaea HOM05D000732 ORTHO05D007766 5.2e-15 84.7 111 45.9
Haze_25677 Corylus avellana HOM05D000732 ORTHO05D007766 6.8e-15 84.3 118 45.8
Hund09178 Selenicereus undatus HOM05D000732 ORTHO05D007766 2.0e-14 82.8 117 47.0
Lsat_1_v5_gn_8_94621 Lactuca sativa HOM05D000732 ORTHO05D007766 3.4e-14 82.0 111 47.7
Lj7A641T80 Lonicera japonica HOM05D000732 ORTHO05D007766 3.4e-14 82.0 119 47.1
PSO339G1373 Papaver somniferum HOM05D000732 ORTHO05D007766 3.4e-14 82.0 118 49.2
arahy.Tifrunner.gnm1.ann1.H7525J Arachis hypogaea HOM05D000732 ORTHO05D007766 5.8e-14 81.3 111 43.2
RcHm_v2.0_Chr2g0091101 Rosa chinensis HOM05D000732 ORTHO05D007766 5.8e-14 81.3 114 47.4
CSS0032766 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007766 9.8e-14 80.5 117 48.7
Eucgr.C01078 Eucalyptus grandis HOM05D000732 ORTHO05D007766 9.8e-14 80.5 106 46.2
Rhsim01G0091300 Rhododendron simsii HOM05D000732 ORTHO05D007766 9.8e-14 80.5 107 46.7
Aqoxy4G03286 Aquilegia oxysepala HOM05D000732 ORTHO05D007766 1.3e-13 80.1 121 46.3
CSS0014403 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007766 1.3e-13 80.1 119 47.9
VMungo1215G0150 Vigna mungo HOM05D000732 ORTHO05D007766 1.3e-13 80.1 120 46.7
MSTRG.19330 Avicennia marina HOM05D000732 ORTHO05D007766 1.7e-13 79.7 121 43.0
Sabra18G0064100 Salix brachista HOM05D000732 ORTHO05D007766 1.7e-13 79.7 118 45.8
FAN28G2903 Fragaria x ananassa HOM05D000732 ORTHO05D007766 2.9e-13 79.0 114 47.4
Nitab4.5_0012119g0020 Nicotiana tabacum HOM05D000732 ORTHO05D007766 2.9e-13 79.0 121 42.1
Ciclev10007618m.g Citrus clementina HOM05D000732 ORTHO05D007766 3.7e-13 78.6 119 47.1
FAN26G3024 Fragaria x ananassa HOM05D000732 ORTHO05D007766 6.4e-13 77.8 114 46.5
Oeu063087.1 Olea europaea HOM05D000732 ORTHO05D007766 8.3e-13 77.4 123 43.9
BcaC02g09430 Brassica carinata HOM05D000732 ORTHO05D007766 1.1e-12 77.0 121 42.1
Duzib150G1244 Durio zibethinus HOM05D000732 ORTHO05D007766 1.1e-12 77.0 108 46.3
Lalb_Chr07g0178631 Lupinus albus HOM05D000732 ORTHO05D007766 1.1e-12 77.0 109 45.9
VMungo1215G3092 Vigna mungo HOM05D000732 ORTHO05D007766 1.1e-12 77.0 119 43.7
CSS0041308 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007766 1.4e-12 76.6 119 42.9
Manes.16G064600 Manihot esculenta HOM05D000732 ORTHO05D007766 1.4e-12 76.6 110 45.5
QL02p086159 Quercus lobata HOM05D000732 ORTHO05D007766 1.4e-12 76.6 126 40.5
FAN26G1785 Fragaria x ananassa HOM05D000732 ORTHO05D007766 1.9e-12 76.3 114 46.5
Potri.018G072500 Populus trichocarpa HOM05D000732 ORTHO05D007766 1.9e-12 76.3 118 44.1
Zm00001eb195530 Zea mays HOM05D000732 ORTHO05D007766 1.9e-12 76.3 114 44.7
Cpa.g.sc23.147 Carica papaya HOM05D000732 ORTHO05D007766 2.4e-12 75.9 117 46.2
MD17G1097200 Malus domestica HOM05D000732 ORTHO05D007766 2.4e-12 75.9 113 47.8
SGA_v2.0_scaffold112G31681 Striga asiatica HOM05D000732 ORTHO05D007766 2.4e-12 75.9 120 43.3
DCAR_023979 Daucus carota HOM05D000732 ORTHO05D007766 3.2e-12 75.5 106 47.2
CSS0025977 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007766 4.1e-12 75.1 119 42.0
FAN23G2640 Fragaria x ananassa HOM05D000732 ORTHO05D007766 4.1e-12 75.1 115 45.2
Thhalv10024576m.g Eutrema salsugineum HOM05D000732 ORTHO05D007766 5.4e-12 74.7 116 45.7
Glyma.05G012600 Glycine max HOM05D000732 ORTHO05D007766 5.4e-12 74.7 113 46.0
Phvul.003G176500 Phaseolus vulgaris HOM05D000732 ORTHO05D007766 5.4e-12 74.7 119 43.7
HanXRQChr06g0179201 Helianthus annuus HOM05D000732 ORTHO05D007766 7.1e-12 74.3 119 39.5
TWI63G1811 Tripterygium wilfordii HOM05D000732 ORTHO05D007766 7.1e-12 74.3 118 41.5
EL10Ac8g18547 Beta vulgaris HOM05D000732 ORTHO05D007766 9.2e-12 73.9 115 40.9
Gohir.D05G022500 Gossypium hirsutum HOM05D000732 ORTHO05D007766 9.2e-12 73.9 108 42.6
Gorai.009G022800 Gossypium raimondii HOM05D000732 ORTHO05D007766 9.2e-12 73.9 108 42.6
C04p42540 Brassica napus HOM05D000732 ORTHO05D007766 1.6e-11 73.2 128 38.3
COL.COLO4_34937 Corchorus olitorius HOM05D000732 ORTHO05D007766 1.6e-11 73.2 117 41.0
Migut.J00742 Erythranthe guttata HOM05D000732 ORTHO05D007766 1.6e-11 73.2 120 40.0
Glyma.17G120700 Glycine max HOM05D000732 ORTHO05D007766 1.6e-11 73.2 112 43.8
AUR62033406 Chenopodium quinoa HOM05D000732 ORTHO05D007766 2.1e-11 72.8 115 42.6
FvH4_1g05440 Fragaria vesca HOM05D000732 ORTHO05D007766 2.1e-11 72.8 114 45.6
THA.LOC104804579 Tarenaya hassleriana HOM05D000732 ORTHO05D007766 2.1e-11 72.8 111 43.2
Thecc.09G115300 Theobroma cacao HOM05D000732 ORTHO05D007766 2.1e-11 72.8 114 42.1
Duzib168G0694 Durio zibethinus HOM05D000732 ORTHO05D007766 2.7e-11 72.4 108 41.7
ECA233G4892 Erigeron canadensis HOM05D000732 ORTHO05D007766 2.7e-11 72.4 124 37.9
FAN19G2164 Fragaria x ananassa HOM05D000732 ORTHO05D007766 2.7e-11 72.4 114 45.6
PGR142G0209 Punica granatum HOM05D000732 ORTHO05D007766 2.7e-11 72.4 120 40.8
Atru.chr7.1292 Acer truncatum HOM05D000732 ORTHO05D007766 3.5e-11 72.0 119 45.4
Gohir.D07G003900 Gossypium hirsutum HOM05D000732 ORTHO05D007766 3.5e-11 72.0 106 45.3
Gorai.001G003600 Gossypium raimondii HOM05D000732 ORTHO05D007766 3.5e-11 72.0 106 45.3
AUR62011033 Chenopodium quinoa HOM05D000732 ORTHO05D007766 4.6e-11 71.6 115 42.6
Sc08g0007130 Simmondsia chinensis HOM05D000732 ORTHO05D007766 6.0e-11 71.2 108 42.6
SGA_v2.0_scaffold31G12816 Striga asiatica HOM05D000732 ORTHO05D007766 6.0e-11 71.2 106 44.3
Ca_02543_v3 Cicer arietinum L. HOM05D000732 ORTHO05D007766 7.8e-11 70.9 117 44.4
Gohir.A07G003500 Gossypium hirsutum HOM05D000732 ORTHO05D007766 7.8e-11 70.9 106 42.5
Gohir.A05G021100 Gossypium hirsutum HOM05D000732 ORTHO05D007766 1.0e-10 70.5 108 41.7
HanXRQChr05g0139151 Helianthus annuus HOM05D000732 ORTHO05D007766 1.3e-10 70.1 119 39.5
vmacro20673 Vaccinium macrocarpon HOM05D000732 ORTHO05D007766 1.3e-10 70.1 115 43.5
Solyc12g007020.2 Solanum lycopersicum HOM05D000732 ORTHO05D007766 1.7e-10 69.7 121 40.5
Peaxi162Scf00546g00222 Petunia axillaris HOM05D000732 ORTHO05D007766 2.3e-10 69.3 122 41.0
Carub.0007s2920 Capsella rubella HOM05D000732 ORTHO05D007766 3.0e-10 68.9 117 41.0
BolC4t25829H Brassica oleracea HOM05D000732 ORTHO05D007766 3.9e-10 68.6 126 39.7
Cc06_g09290 Coffea canephora HOM05D000732 ORTHO05D007766 6.6e-10 67.8 104 43.3
ClCG06G010420 Citrullus lanatus HOM05D000732 ORTHO05D007766 8.6e-10 67.4 119 39.5
MELO3C025312.2 Cucumis melo HOM05D000732 ORTHO05D007766 8.6e-10 67.4 119 42.9
Nitab4.5_0003537g0030 Nicotiana tabacum HOM05D000732 ORTHO05D007766 8.6e-10 67.4 108 41.7
BraA04t16570Z Brassica rapa HOM05D000732 ORTHO05D007766 1.1e-09 67.0 120 40.0
CsaV3_1G030890 Cucumis sativus L. HOM05D000732 ORTHO05D007766 1.1e-09 67.0 119 42.9
AL9U10290 Arabidopsis lyrata HOM05D000732 ORTHO05D007766 1.5e-09 66.6 120 38.3
CAN.G1710.7 Capsicum annuum HOM05D000732 ORTHO05D007766 1.9e-09 66.2 104 43.3
PGSC0003DMG400000381 Solanum tuberosum HOM05D000732 ORTHO05D007766 1.9e-09 66.2 121 38.8
BcaC07g37376 Brassica carinata HOM05D000732 ORTHO05D007766 2.5e-09 65.9 121 38.8
C08p08240 Brassica napus HOM05D000732 ORTHO05D007766 2.5e-09 65.9 121 38.8
BolC8t47676H Brassica oleracea HOM05D000732 ORTHO05D007766 2.5e-09 65.9 121 38.8
Aa31LG9G4370 Aethionema arabicum HOM05D000732 ORTHO05D007766 4.3e-09 65.1 116 40.5
Lj4g0018297 Lotus japonicus HOM05D000732 ORTHO05D007766 5.6e-09 64.7 120 37.5
Sp7g10950 Schrenkiella parvula HOM05D000732 ORTHO05D007766 5.6e-09 64.7 116 39.7
SEGI_19269 Sequoiadendron giganteum HOM05D000732 ORTHO05D007766 5.6e-09 64.7 126 34.9
AT4G13370 Arabidopsis thaliana HOM05D000732 ORTHO05D007766 7.3e-09 64.3 115 42.6
BcaB03g16094 Brassica carinata HOM05D000732 ORTHO05D007766 9.5e-09 63.9 125 37.6
A08p06980 Brassica napus HOM05D000732 ORTHO05D007766 1.2e-08 63.5 119 39.5
BraA08t32708Z Brassica rapa HOM05D000732 ORTHO05D007766 4.7e-08 61.6 119 39.5
A04p08730 Brassica napus HOM05D000732 ORTHO05D007766 6.2e-08 61.2 121 39.7
Sed0023905 Sechium edule HOM05D000732 ORTHO05D007766 6.2e-08 61.2 107 43.9
Medtr4g112035 Medicago truncatula HOM05D000732 ORTHO05D007766 8.1e-08 60.8 116 37.9
Os11g0120200 Oryza sativa ssp. japonica HOM05D000732 ORTHO05D007766 1.1e-07 60.5 114 39.5
Os12g0120000 Oryza sativa ssp. japonica HOM05D000732 ORTHO05D007766 1.1e-07 60.5 114 39.5
unitig_578.g15806 Utricularia gibba HOM05D000732 ORTHO05D007766 5.2e-07 58.2 119 34.5
Ah.09g226940 Amaranthus hybridus HOM05D000732 ORTHO05D007766 1.2e-06 57.0 109 40.4
CARHR218940 Cardamine hirsuta HOM05D000732 ORTHO05D007766 5.8e-06 54.7 118 33.9


User provided reference genes

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