Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.8e-73 278.5 139 100.0
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 2.7e-55 218.8 143 73.4
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 5.9e-55 217.6 188 63.3
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 1.7e-54 216.1 190 61.1
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.5e-53 213.0 190 61.1
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 1.9e-53 212.6 190 61.1
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 1.9e-53 212.6 190 61.1
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 2.5e-53 212.2 190 61.1
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 2.5e-53 212.2 190 60.5
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 3.3e-53 211.8 190 61.1
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 7.2e-53 210.7 190 59.5
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 7.2e-53 210.7 190 58.9
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 9.5e-53 210.3 190 59.5
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 1.6e-52 209.5 190 60.0
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 2.8e-52 208.8 190 59.5
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 2.8e-52 208.8 190 58.4
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 2.8e-52 208.8 190 58.9
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 3.6e-52 208.4 190 60.0
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 3.6e-52 208.4 190 60.0
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 4.7e-52 208.0 190 58.9
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 4.7e-52 208.0 190 58.4
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 4.7e-52 208.0 190 58.4
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 4.7e-52 208.0 190 58.9
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 4.7e-52 208.0 190 58.4
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 6.1e-52 207.6 190 59.5
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 6.1e-52 207.6 190 58.9
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 6.1e-52 207.6 190 58.9
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 6.1e-52 207.6 190 59.5
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 6.1e-52 207.6 190 58.9
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 6.1e-52 207.6 190 58.9
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 8.0e-52 207.2 190 58.9
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 8.0e-52 207.2 190 59.5
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 8.0e-52 207.2 190 59.5
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 8.0e-52 207.2 190 58.4
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 8.0e-52 207.2 190 58.9
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 1.0e-51 206.8 190 58.9
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 1.0e-51 206.8 190 58.9
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 1.0e-51 206.8 190 58.4
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 1.0e-51 206.8 190 58.9
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 1.4e-51 206.5 190 58.4
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 1.4e-51 206.5 190 59.5
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 1.8e-51 206.1 190 58.9
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 1.8e-51 206.1 190 58.9
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 2.3e-51 205.7 190 56.8
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 2.3e-51 205.7 190 57.9
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 3.0e-51 205.3 190 58.4
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 3.0e-51 205.3 190 57.4
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 3.0e-51 205.3 190 57.9
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 3.0e-51 205.3 190 58.9
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 3.0e-51 205.3 190 58.4
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 3.0e-51 205.3 188 58.5
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 4.0e-51 204.9 190 58.4
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 4.0e-51 204.9 190 57.4
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 4.0e-51 204.9 190 58.9
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 4.0e-51 204.9 190 58.9
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 4.0e-51 204.9 190 58.4
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 4.0e-51 204.9 190 58.4
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 5.2e-51 204.5 190 57.4
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 5.2e-51 204.5 190 57.9
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 5.2e-51 204.5 190 57.9
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 5.2e-51 204.5 190 57.4
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 6.8e-51 204.1 190 57.9
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 6.8e-51 204.1 188 58.0
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 6.8e-51 204.1 190 57.9
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 6.8e-51 204.1 190 57.9
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 6.8e-51 204.1 190 57.9
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 6.8e-51 204.1 190 57.4
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 8.9e-51 203.8 190 57.4
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 8.9e-51 203.8 190 58.4
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 8.9e-51 203.8 188 57.4
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 8.9e-51 203.8 190 58.4
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 1.2e-50 203.4 190 57.9
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.2e-50 203.4 190 58.9
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 1.2e-50 203.4 190 58.4
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 1.2e-50 203.4 190 58.9
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 1.2e-50 203.4 190 56.8
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 1.5e-50 203.0 190 57.4
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 1.5e-50 203.0 190 57.4
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 1.5e-50 203.0 188 58.0
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 2.0e-50 202.6 188 58.5
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 2.0e-50 202.6 189 58.2
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 2.0e-50 202.6 190 57.9
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 2.0e-50 202.6 190 57.9
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 2.0e-50 202.6 188 58.0
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.6e-50 202.2 109 93.6
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 2.6e-50 202.2 190 56.8
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 2.6e-50 202.2 190 57.4
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 2.6e-50 202.2 190 58.4
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 2.6e-50 202.2 190 57.9
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 2.6e-50 202.2 189 58.2
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 2.6e-50 202.2 190 57.9
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 3.4e-50 201.8 190 57.4
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 3.4e-50 201.8 190 57.4
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 3.4e-50 201.8 190 56.8
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 4.4e-50 201.4 189 57.1
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 4.4e-50 201.4 190 56.8
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 4.4e-50 201.4 190 57.9
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 5.7e-50 201.1 190 57.9
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 5.7e-50 201.1 190 57.9
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 5.7e-50 201.1 190 56.8
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 7.5e-50 200.7 190 57.4
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 7.5e-50 200.7 190 56.3
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 7.5e-50 200.7 190 57.4
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 7.5e-50 200.7 188 56.9
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 7.5e-50 200.7 190 56.8
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 9.8e-50 200.3 188 57.4
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 9.8e-50 200.3 190 57.4
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 9.8e-50 200.3 190 56.3
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 1.3e-49 199.9 189 56.6
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.3e-49 199.9 190 56.3
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 1.7e-49 199.5 190 56.3
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 1.7e-49 199.5 190 56.3
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 1.7e-49 199.5 190 56.3
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 1.7e-49 199.5 190 55.3
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 1.7e-49 199.5 188 56.9
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 2.2e-49 199.1 190 56.8
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 2.2e-49 199.1 190 56.8
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.7e-49 198.4 188 56.4
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 4.9e-49 198.0 189 54.5
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 1.1e-48 196.8 185 57.3
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 2.4e-48 195.7 183 59.6
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 7.0e-48 194.1 190 55.8
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 1.2e-47 193.4 188 55.9
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 1.6e-47 193.0 188 55.3
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 1.6e-47 193.0 188 54.3
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 3.5e-47 191.8 190 54.2
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 4.6e-47 191.4 177 59.3
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 5.9e-47 191.0 190 53.7
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 7.8e-47 190.7 189 55.6
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 2.5e-45 185.7 156 64.1
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 3.3e-45 185.3 191 52.4
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 5.6e-45 184.5 189 54.0
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 1.6e-44 183.0 175 56.6
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 1.6e-44 183.0 175 56.6
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 2.1e-44 182.6 190 51.1
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 4.7e-44 181.4 110 80.0
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 6.8e-43 177.6 107 80.4
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 2.0e-42 176.0 110 77.3
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 4.1e-40 168.3 156 59.0
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 5.4e-40 167.9 157 59.9
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 9.2e-40 167.2 179 54.7
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 1.0e-38 163.7 190 48.4
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 8.6e-38 160.6 149 57.0
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 1.9e-37 159.5 121 65.3
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 7.3e-37 157.5 121 64.5
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 7.3e-37 157.5 159 54.1
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 3.6e-36 155.2 187 47.1
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 6.2e-36 154.5 121 64.5
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.8e-35 152.9 156 57.1
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 5.2e-35 151.4 116 66.4
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 2.0e-34 149.4 137 59.1
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 2.6e-34 149.1 144 58.3
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 2.3e-27 125.9 152 52.0
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 6.4e-25 117.9 192 39.1
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 1.2e-23 113.6 76 69.7
ATR0208G001 Amborella trichopoda HOM05D003687 ORTHO05D067511 3.3e-21 105.5 65 81.5
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 1.1e-19 100.5 111 55.0
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 1.4e-19 100.1 78 64.1
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 4.0e-19 98.6 191 30.4
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 6.8e-19 97.8 63 74.6
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 5.8e-18 94.7 56 83.9
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 2.2e-17 92.8 65 76.9
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 4.6e-15 85.1 135 39.3
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 3.9e-14 82.0 202 30.7
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 4.9e-09 65.1 108 38.0
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 4.9e-09 65.1 108 38.0
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 1.9e-08 63.2 61 49.2
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 4.2e-08 62.0 29 93.1
TAR371G0743 Trochodendron aralioides HOM05D003687 ORTHO05D006936 1.0e-06 57.4 61 47.5
SalBow7G4144 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.7e-06 56.6 28 85.7
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.9e-06 55.5 28 82.1


User provided reference genes

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