Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0552G001 Amborella trichopoda HOM05D000732 ORTHO05D038301 7.6e-68 260.4 133 100.0
ATR0554G001 Amborella trichopoda HOM05D000732 ORTHO05D038301 2.4e-53 212.2 112 97.3
CDE06G0908 Ceratophyllum demersum HOM05D000732 ORTHO05D007766 6.1e-17 91.3 112 50.0
MBI03_g15322_MAGBIO Magnolia biondii HOM05D000732 ORTHO05D007766 5.2e-16 88.2 120 50.8
TAR369G0294 Trochodendron aralioides HOM05D000732 ORTHO05D007766 8.9e-16 87.4 116 50.0
GSVIVG01015437001 Vitis vinifera HOM05D000732 ORTHO05D007766 1.2e-15 87.0 116 50.0
Actinidia09400 Actinidia chinensis HOM05D000732 ORTHO05D007766 1.5e-15 86.7 126 46.0
Prupe.7G226800 Prunus persica HOM05D000732 ORTHO05D007766 2.6e-15 85.9 109 49.5
CDE07G0191 Ceratophyllum demersum HOM05D000732 ORTHO05D007766 4.4e-15 85.1 112 48.2
Actinidia20336 Actinidia chinensis HOM05D000732 ORTHO05D007766 9.8e-15 84.0 118 45.8
Haze_25677 Corylus avellana HOM05D000732 ORTHO05D007766 1.7e-14 83.2 115 46.1
Dinv36601 Davidia involucrata HOM05D000732 ORTHO05D007766 2.8e-14 82.4 116 47.4
CSS0032766 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007766 3.7e-14 82.0 120 48.3
Cfa003294 Carpinus fangiana HOM05D000732 ORTHO05D007766 4.9e-14 81.6 115 45.2
Lsat_1_v5_gn_8_94621 Lactuca sativa HOM05D000732 ORTHO05D007766 4.9e-14 81.6 120 45.0
arahy.Tifrunner.gnm1.ann1.3B9WQN Arachis hypogaea HOM05D000732 ORTHO05D007766 6.3e-14 81.3 108 45.4
Hund09178 Selenicereus undatus HOM05D000732 ORTHO05D007766 6.3e-14 81.3 114 47.4
Aqoxy4G03286 Aquilegia oxysepala HOM05D000732 ORTHO05D007766 8.3e-14 80.9 122 46.7
CSS0014403 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007766 8.3e-14 80.9 116 49.1
CiPaw.03G235500 Carya illinoinensis HOM05D000732 ORTHO05D007766 8.3e-14 80.9 115 47.0
MD15G1190300 Malus domestica HOM05D000732 ORTHO05D007766 8.3e-14 80.9 109 49.5
PSO339G1373 Papaver somniferum HOM05D000732 ORTHO05D007766 8.3e-14 80.9 115 48.7
MD02G1062500 Malus domestica HOM05D000417 ORTHO05D007766 1.8e-13 79.7 109 48.6
RcHm_v2.0_Chr2g0091101 Rosa chinensis HOM05D000732 ORTHO05D007766 1.8e-13 79.7 111 47.7
Sabra18G0064100 Salix brachista HOM05D000732 ORTHO05D007766 3.2e-13 79.0 116 46.6
Lj7A641T80 Lonicera japonica HOM05D000732 ORTHO05D007766 4.1e-13 78.6 117 47.0
arahy.Tifrunner.gnm1.ann1.H7525J Arachis hypogaea HOM05D000732 ORTHO05D007766 7.0e-13 77.8 108 42.6
Nitab4.5_0012119g0020 Nicotiana tabacum HOM05D000732 ORTHO05D007766 7.0e-13 77.8 118 42.4
MSTRG.19330 Avicennia marina HOM05D000732 ORTHO05D007766 9.2e-13 77.4 118 42.4
Ciclev10007618m.g Citrus clementina HOM05D000732 ORTHO05D007766 9.2e-13 77.4 116 45.7
HanXRQChr06g0179201 Helianthus annuus HOM05D000732 ORTHO05D007766 1.6e-12 76.6 129 38.8
Rhsim01G0091300 Rhododendron simsii HOM05D000732 ORTHO05D007766 2.0e-12 76.3 105 44.8
Eucgr.C01078 Eucalyptus grandis HOM05D000732 ORTHO05D007766 2.7e-12 75.9 118 42.4
FAN28G2903 Fragaria x ananassa HOM05D000732 ORTHO05D007766 2.7e-12 75.9 109 46.8
CSS0041308 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007766 3.5e-12 75.5 121 43.0
BcaC02g09430 Brassica carinata HOM05D000732 ORTHO05D007766 4.5e-12 75.1 122 42.6
FAN26G3024 Fragaria x ananassa HOM05D000732 ORTHO05D007766 4.5e-12 75.1 109 46.8
Potri.018G072500 Populus trichocarpa HOM05D000732 ORTHO05D007766 4.5e-12 75.1 115 44.3
VMungo1215G0150 Vigna mungo HOM05D000732 ORTHO05D007766 4.5e-12 75.1 117 45.3
Duzib150G1244 Durio zibethinus HOM05D000732 ORTHO05D007766 5.9e-12 74.7 105 46.7
Lalb_Chr07g0178631 Lupinus albus HOM05D000732 ORTHO05D007766 5.9e-12 74.7 119 42.0
MD17G1097200 Malus domestica HOM05D000732 ORTHO05D007766 5.9e-12 74.7 132 43.2
CSS0025977 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007766 1.0e-11 73.9 121 42.1
SGA_v2.0_scaffold112G31681 Striga asiatica HOM05D000732 ORTHO05D007766 1.0e-11 73.9 117 42.7
FAN23G2640 Fragaria x ananassa HOM05D000732 ORTHO05D007766 1.3e-11 73.6 112 45.5
FAN26G1785 Fragaria x ananassa HOM05D000732 ORTHO05D007766 1.3e-11 73.6 109 46.8
Zm00001eb195530 Zea mays HOM05D000732 ORTHO05D007766 1.3e-11 73.6 112 43.8
COL.COLO4_34937 Corchorus olitorius HOM05D000732 ORTHO05D007766 2.3e-11 72.8 114 42.1
DCAR_023979 Daucus carota HOM05D000732 ORTHO05D007766 2.3e-11 72.8 103 47.6
HanXRQChr05g0139151 Helianthus annuus HOM05D000732 ORTHO05D007766 2.3e-11 72.8 129 38.8
C04p42540 Brassica napus HOM05D000732 ORTHO05D007766 2.9e-11 72.4 138 37.0
Oeu063087.1 Olea europaea HOM05D000732 ORTHO05D007766 2.9e-11 72.4 120 43.3
Thhalv10024576m.g Eutrema salsugineum HOM05D000732 ORTHO05D007766 3.9e-11 72.0 126 42.9
VMungo1215G3092 Vigna mungo HOM05D000732 ORTHO05D007766 3.9e-11 72.0 116 42.2
Migut.J00742 Erythranthe guttata HOM05D000732 ORTHO05D007766 5.0e-11 71.6 117 39.3
Phvul.003G176500 Phaseolus vulgaris HOM05D000732 ORTHO05D007766 5.0e-11 71.6 103 47.6
THA.LOC104804579 Tarenaya hassleriana HOM05D000732 ORTHO05D007766 5.0e-11 71.6 109 43.1
TWI63G1811 Tripterygium wilfordii HOM05D000732 ORTHO05D007766 5.0e-11 71.6 115 40.9
Atru.chr7.1292 Acer truncatum HOM05D000732 ORTHO05D007766 6.6e-11 71.2 116 46.6
Duzib168G0694 Durio zibethinus HOM05D000732 ORTHO05D007766 6.6e-11 71.2 116 42.2
ECA233G4892 Erigeron canadensis HOM05D000732 ORTHO05D007766 8.6e-11 70.9 139 35.3
SGA_v2.0_scaffold31G12816 Striga asiatica HOM05D000732 ORTHO05D007766 8.6e-11 70.9 105 44.8
EL10Ac8g18547 Beta vulgaris HOM05D000732 ORTHO05D007766 1.1e-10 70.5 112 40.2
Gohir.D05G022500 Gossypium hirsutum HOM05D000732 ORTHO05D007766 1.1e-10 70.5 105 41.9
Gorai.009G022800 Gossypium raimondii HOM05D000732 ORTHO05D007766 1.1e-10 70.5 105 41.9
vmacro20673 Vaccinium macrocarpon HOM05D000732 ORTHO05D007766 1.1e-10 70.5 111 44.1
FvH4_1g05440 Fragaria vesca HOM05D000732 ORTHO05D007766 1.5e-10 70.1 109 45.9
Glyma.05G012600 Glycine max HOM05D000732 ORTHO05D007766 1.5e-10 70.1 101 47.5
FAN19G2164 Fragaria x ananassa HOM05D000732 ORTHO05D007766 1.9e-10 69.7 109 45.9
Thecc.09G115300 Theobroma cacao HOM05D000732 ORTHO05D007766 1.9e-10 69.7 111 42.3
Sc08g0007130 Simmondsia chinensis HOM05D000732 ORTHO05D007766 3.3e-10 68.9 105 42.9
Glyma.17G120700 Glycine max HOM05D000732 ORTHO05D007766 4.3e-10 68.6 112 42.0
Gohir.A07G003500 Gossypium hirsutum HOM05D000732 ORTHO05D007766 4.3e-10 68.6 114 42.1
Manes.16G064600 Manihot esculenta HOM05D000732 ORTHO05D007766 4.3e-10 68.6 107 42.1
QL02p086159 Quercus lobata HOM05D000732 ORTHO05D007766 4.3e-10 68.6 123 39.0
Cpa.g.sc23.147 Carica papaya HOM05D000732 ORTHO05D007766 5.6e-10 68.2 115 45.2
Ca_02543_v3 Cicer arietinum L. HOM05D000732 ORTHO05D007766 5.6e-10 68.2 113 41.6
BolC4t25829H Brassica oleracea HOM05D000732 ORTHO05D007766 7.3e-10 67.8 136 38.2
Carub.0007s2920 Capsella rubella HOM05D000732 ORTHO05D007766 7.3e-10 67.8 114 41.2
MELO3C025312.2 Cucumis melo HOM05D000732 ORTHO05D007766 7.3e-10 67.8 116 44.0
AUR62033406 Chenopodium quinoa HOM05D000732 ORTHO05D007766 9.5e-10 67.4 112 39.3
ClCG06G010420 Citrullus lanatus HOM05D000732 ORTHO05D007766 9.5e-10 67.4 116 40.5
CsaV3_1G030890 Cucumis sativus L. HOM05D000732 ORTHO05D007766 9.5e-10 67.4 116 44.0
Gohir.D07G003900 Gossypium hirsutum HOM05D000732 ORTHO05D007766 9.5e-10 67.4 119 41.2
Gorai.001G003600 Gossypium raimondii HOM05D000732 ORTHO05D007766 9.5e-10 67.4 119 41.2
Peaxi162Scf00546g00222 Petunia axillaris HOM05D000732 ORTHO05D007766 9.5e-10 67.4 119 41.2
Solyc12g007020.2 Solanum lycopersicum HOM05D000732 ORTHO05D007766 9.5e-10 67.4 118 39.8
AUR62011033 Chenopodium quinoa HOM05D000732 ORTHO05D007766 1.2e-09 67.0 112 39.3
Gohir.A05G021100 Gossypium hirsutum HOM05D000732 ORTHO05D007766 1.2e-09 67.0 105 41.0
Nitab4.5_0003537g0030 Nicotiana tabacum HOM05D000732 ORTHO05D007766 2.1e-09 66.2 107 41.1
PGSC0003DMG400000381 Solanum tuberosum HOM05D000732 ORTHO05D007766 3.6e-09 65.5 118 39.0
AL9U10290 Arabidopsis lyrata HOM05D000732 ORTHO05D007766 4.7e-09 65.1 117 39.3
Cc06_g09290 Coffea canephora HOM05D000732 ORTHO05D007766 4.7e-09 65.1 117 42.7
AT4G13370 Arabidopsis thaliana HOM05D000732 ORTHO05D007766 6.1e-09 64.7 116 42.2
BraA04t16570Z Brassica rapa HOM05D000732 ORTHO05D007766 6.1e-09 64.7 130 37.7
PGR142G0209 Punica granatum HOM05D000732 ORTHO05D007766 1.0e-08 63.9 117 40.2
Lj4g0018297 Lotus japonicus HOM05D000732 ORTHO05D007766 1.4e-08 63.5 117 37.6
SEGI_19269 Sequoiadendron giganteum HOM05D000732 ORTHO05D007766 1.4e-08 63.5 123 35.8
BcaB03g16094 Brassica carinata HOM05D000732 ORTHO05D007766 1.8e-08 63.2 135 36.3
BcaC07g37376 Brassica carinata HOM05D000732 ORTHO05D007766 2.3e-08 62.8 131 36.6
C08p08240 Brassica napus HOM05D000732 ORTHO05D007766 2.3e-08 62.8 131 36.6
BolC8t47676H Brassica oleracea HOM05D000732 ORTHO05D007766 2.3e-08 62.8 131 36.6
CAN.G1710.7 Capsicum annuum HOM05D000732 ORTHO05D007766 3.1e-08 62.4 101 42.6
Os11g0120200 Oryza sativa ssp. japonica HOM05D000732 ORTHO05D007766 3.1e-08 62.4 115 42.6
Os12g0120000 Oryza sativa ssp. japonica HOM05D000732 ORTHO05D007766 3.1e-08 62.4 115 42.6
Sp7g10950 Schrenkiella parvula HOM05D000732 ORTHO05D007766 4.0e-08 62.0 126 38.1
Aa31LG9G4370 Aethionema arabicum HOM05D000732 ORTHO05D007766 8.9e-08 60.8 109 41.3
A08p06980 Brassica napus HOM05D000732 ORTHO05D007766 8.9e-08 60.8 126 37.3
Sed0023905 Sechium edule HOM05D000732 ORTHO05D007766 2.6e-07 59.3 116 41.4
BraA08t32708Z Brassica rapa HOM05D000732 ORTHO05D007766 9.8e-07 57.4 126 36.5
Ah.09g226940 Amaranthus hybridus HOM05D000732 ORTHO05D007766 1.3e-06 57.0 109 40.4
A04p08730 Brassica napus HOM05D000732 ORTHO05D007766 1.3e-06 57.0 114 40.4
Medtr4g112035 Medicago truncatula HOM05D000732 ORTHO05D007766 1.7e-06 56.6 113 37.2
unitig_578.g15806 Utricularia gibba HOM05D000732 ORTHO05D007766 8.3e-06 54.3 115 35.7


User provided reference genes

Program Settings