Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0535G001 Amborella trichopoda HOM05D000533 ORTHO05D002807 1.1e-22 109.0 53 100.0
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 9.0e-20 99.4 52 94.2
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 1.5e-19 98.6 52 92.3
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 5.8e-19 96.7 52 90.4
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 5.8e-19 96.7 52 90.4
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 5.8e-19 96.7 52 90.4
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 5.8e-19 96.7 52 90.4
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 5.8e-19 96.7 52 90.4
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 5.8e-19 96.7 52 90.4
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 5.8e-19 96.7 52 90.4
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 5.8e-19 96.7 52 90.4
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 5.8e-19 96.7 52 90.4
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 5.8e-19 96.7 52 90.4
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 5.8e-19 96.7 52 90.4
Lsat_1_v5_gn_1_58461 Lactuca sativa HOM05D000533 ORTHO05D002807 5.8e-19 96.7 52 90.4
Sopen02g002710 Solanum pennellii HOM05D000533 ORTHO05D002807 5.8e-19 96.7 52 84.6
MELO3C027055.2 Cucumis melo HOM05D000533 ORTHO05D002807 7.6e-19 96.3 52 88.5
Nn064s42206 Nelumbo nucifera HOM05D000533 ORTHO05D002807 7.6e-19 96.3 52 90.4
Nitab4.5_0006502g0040 Nicotiana tabacum HOM05D000533 ORTHO05D002807 7.6e-19 96.3 52 86.5
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 7.6e-19 96.3 52 86.5
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 7.6e-19 96.3 52 88.5
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 7.6e-19 96.3 52 88.5
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 7.6e-19 96.3 52 88.5
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 9.9e-19 95.9 52 88.5
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 9.9e-19 95.9 52 88.5
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 9.9e-19 95.9 52 88.5
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.3e-18 95.5 52 90.4
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.3e-18 95.5 52 90.4
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 1.7e-18 95.1 52 88.5
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 1.7e-18 95.1 52 88.5
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 1.7e-18 95.1 52 86.5
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 1.7e-18 95.1 52 86.5
Gohir.A01G139542 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.2e-18 94.7 52 86.5
FAN01G2990 Fragaria x ananassa HOM05D000533 ORTHO05D002807 3.8e-18 94.0 52 84.6
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 4.9e-18 93.6 52 86.5
CAN.G1470.9 Capsicum annuum HOM05D000533 ORTHO05D002807 4.9e-18 93.6 52 86.5
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 4.9e-18 93.6 52 86.5
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.9e-18 93.6 52 86.5
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.9e-18 93.6 52 86.5
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.9e-18 93.6 52 86.5
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.9e-18 93.6 52 86.5
Ah.10g027030 Amaranthus hybridus HOM05D000533 ORTHO05D002807 6.4e-18 93.2 52 86.5
RcHm_v2.0_Chr3g0470801 Rosa chinensis HOM05D000533 ORTHO05D002807 6.4e-18 93.2 52 84.6
Gohir.A06G090050 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.1e-17 92.4 52 84.6
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 1.1e-17 92.4 52 86.5
C05p53830 Brassica napus HOM05D000533 ORTHO05D002807 1.4e-17 92.0 52 86.5
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 1.4e-17 92.0 52 86.5
BolC2t10600H Brassica oleracea HOM05D000533 ORTHO05D002807 1.4e-17 92.0 52 86.5
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 1.4e-17 92.0 52 86.5
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 1.4e-17 92.0 52 86.5
BolSC45t60906H Brassica oleracea HOM05D000533 ORTHO05D002807 1.4e-17 92.0 52 86.5
BolSC46t60955H Brassica oleracea HOM05D000533 ORTHO05D002807 1.4e-17 92.0 52 86.5
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 1.4e-17 92.0 52 86.5
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 1.4e-17 92.0 52 86.5
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 1.4e-17 92.0 52 86.5
BraSC25t45913Z Brassica rapa HOM05D000533 ORTHO05D002807 1.4e-17 92.0 52 86.5
BraSC59t46529Z Brassica rapa HOM05D000533 ORTHO05D002807 1.4e-17 92.0 52 86.5
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.4e-17 92.0 50 86.0
PGSC0003DMG402008783 Solanum tuberosum HOM05D000533 ORTHO05D002807 1.4e-17 92.0 52 84.6
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 1.4e-17 92.0 52 86.5
C02p28820 Brassica napus HOM05D000533 ORTHO05D002807 1.9e-17 91.7 52 84.6
BolC2t08927H Brassica oleracea HOM05D000533 ORTHO05D002807 1.9e-17 91.7 52 84.6
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 1.9e-17 91.7 52 84.6
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.9e-17 91.7 47 91.5
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 1.9e-17 91.7 52 86.5
Lsat_1_v5_gn_8_103040 Lactuca sativa HOM05D000533 ORTHO05D002807 1.9e-17 91.7 52 82.7
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 2.4e-17 91.3 52 82.7
arahy.Tifrunner.gnm1.ann1.510BCU Arachis hypogaea HOM05D000533 ORTHO05D002807 2.4e-17 91.3 52 82.7
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 2.4e-17 91.3 52 82.7
EL10Ac6g14288 Beta vulgaris HOM05D000533 ORTHO05D002807 2.4e-17 91.3 52 84.6
EL10As15g24097 Beta vulgaris HOM05D000533 ORTHO05D002807 2.4e-17 91.3 52 84.6
Gorai.005G106600 Gossypium raimondii HOM05D000533 ORTHO05D002807 2.4e-17 91.3 52 84.6
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 4.2e-17 90.5 52 84.6
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 4.2e-17 90.5 52 84.6
HanXRQChr01g0020051 Helianthus annuus HOM05D000533 ORTHO05D002807 4.2e-17 90.5 49 89.8
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 4.2e-17 90.5 52 82.7
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 4.2e-17 90.5 52 82.7
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 5.4e-17 90.1 52 84.6
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 5.4e-17 90.1 52 84.6
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 5.4e-17 90.1 52 84.6
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 5.4e-17 90.1 49 87.8
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 7.1e-17 89.7 50 84.0
CAN.G965.4 Capsicum annuum HOM05D000533 ORTHO05D002807 9.3e-17 89.4 52 82.7
Psat0s1160g0400 Pisum sativum HOM05D000533 ORTHO05D002807 9.3e-17 89.4 52 78.8
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 9.3e-17 89.4 52 78.8
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 9.3e-17 89.4 52 78.8
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 9.3e-17 89.4 52 78.8
Psat4g172360 Pisum sativum HOM05D000533 ORTHO05D002807 9.3e-17 89.4 52 78.8
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 9.3e-17 89.4 52 78.8
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 1.2e-16 89.0 48 87.5
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 1.2e-16 89.0 48 87.5
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 1.2e-16 89.0 52 78.8
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 1.2e-16 89.0 52 78.8
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 1.2e-16 89.0 50 80.0
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 1.2e-16 89.0 50 80.0
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 1.6e-16 88.6 52 80.8
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 2.1e-16 88.2 52 78.8
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 2.1e-16 88.2 52 80.8
Lj2C1229T2 Lonicera japonica HOM05D000533 ORTHO05D002807 2.7e-16 87.8 52 80.8
Psat1g104960 Pisum sativum HOM05D000533 ORTHO05D002807 2.7e-16 87.8 52 76.9
Sed0023687 Sechium edule HOM05D000533 ORTHO05D002807 3.5e-16 87.4 49 83.7
SEGI_20811 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 3.5e-16 87.4 52 76.9
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 6.0e-16 86.7 50 80.0
CAN.G30.8 Capsicum annuum HOM05D000533 ORTHO05D002807 7.9e-16 86.3 52 80.8
MELO3C031836.2 Cucumis melo HOM05D000533 ORTHO05D002807 7.9e-16 86.3 52 76.9
Gohir.D02G093940 Gossypium hirsutum HOM05D000533 ORTHO05D002807 7.9e-16 86.3 52 80.8
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.3e-15 85.5 52 80.8
Medtr3g113820 Medicago truncatula HOM05D000533 ORTHO05D002807 2.3e-15 84.7 52 78.8
Psat0s1586g0320 Pisum sativum HOM05D000533 ORTHO05D002807 2.3e-15 84.7 52 73.1
Nitab4.5_0002752g0100 Nicotiana tabacum HOM05D000533 ORTHO05D002807 3.9e-15 84.0 45 91.1
CAN.G127.11 Capsicum annuum HOM05D000533 ORTHO05D002807 1.1e-14 82.4 52 71.2
Psat0s411g0120 Pisum sativum HOM05D000533 ORTHO05D002807 1.5e-14 82.0 52 71.2
Gorai.003G091000 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.9e-14 81.6 49 79.6
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.3e-14 80.9 52 73.1
Potri.013G074800 Populus trichocarpa HOM05D000533 ORTHO05D002807 4.3e-14 80.5 52 71.2
CAN.G262.8 Capsicum annuum HOM05D000533 ORTHO05D002807 7.4e-14 79.7 52 73.1
Nitab4.5_0000660g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 7.4e-14 79.7 52 75.0
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 3.7e-13 77.4 43 88.4
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 1.1e-12 75.9 42 83.3
Gohir.D06G147033 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.4e-12 74.7 42 81.0
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 9.0e-12 72.8 39 87.2
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 9.0e-12 72.8 46 71.7
Gorai.007G369400 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.5e-11 72.0 52 71.2
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 2.0e-11 71.6 50 70.0
Gohir.D11G339850 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.6e-11 71.2 52 73.1
arahy.Tifrunner.gnm1.ann1.V68ACY Arachis hypogaea HOM05D000533 ORTHO05D001069 7.6e-11 69.7 39 84.6
Nitab4.5_0000843g0030 Nicotiana tabacum HOM05D000533 ORTHO05D002807 7.6e-11 69.7 48 68.8
HanXRQChr00c0703g0576921 Helianthus annuus HOM05D000533 ORTHO05D002807 2.2e-10 68.2 37 81.1
Mapoly0167s0016 Marchantia polymorpha HOM05D000533 ORTHO05D002807 2.9e-10 67.8 47 63.8
Solyc11g021233.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 4.9e-10 67.0 53 64.2
SGA_v2.0_scaffold150G36657 Striga asiatica HOM05D000533 ORTHO05D002807 4.9e-10 67.0 46 71.7
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 6.4e-10 66.6 100 41.0
Nn7g37744 Nelumbo nucifera HOM05D000533 ORTHO05D002807 1.9e-09 65.1 34 88.2
arahy.Tifrunner.gnm1.ann1.2N2B18 Arachis hypogaea HOM05D008259 ORTHO05D010449 2.4e-09 64.7 52 55.8
Psat6g182640 Pisum sativum HOM05D000533 ORTHO05D002807 9.3e-09 62.8 34 79.4
TPR.G39966 Trifolium pratense HOM05D000533 ORTHO05D002807 1.3e-07 58.9 30 83.3
EL10As15g24139 Beta vulgaris HOM05D000533 ORTHO05D002807 5.1e-07 57.0 39 69.2
BolC2t10614H Brassica oleracea HOM05D000533 ORTHO05D002807 5.1e-07 57.0 52 61.5
Nitab4.5_0006409g0090 Nicotiana tabacum HOM05D000533 ORTHO05D002807 8.7e-07 56.2 52 63.5
Solyc02g011800.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 5.6e-06 53.5 27 88.9


User provided reference genes

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