Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.8e-26 121.7 56 100.0
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.3e-26 121.3 55 100.0
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 6.8e-26 119.8 55 98.2
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 6.8e-26 119.8 55 98.2
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.5e-25 118.6 55 96.4
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 1.5e-25 118.6 55 96.4
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.5e-25 118.6 55 96.4
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.5e-25 118.6 55 96.4
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.5e-25 118.6 55 96.4
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 2.0e-25 118.2 55 96.4
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.0e-25 118.2 55 96.4
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 2.0e-25 118.2 55 96.4
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.0e-25 118.2 55 96.4
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.0e-25 118.2 55 96.4
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.0e-25 118.2 55 96.4
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.0e-25 118.2 55 96.4
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 2.0e-25 118.2 55 96.4
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 2.0e-25 118.2 55 96.4
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 4.4e-25 117.1 55 94.5
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 4.4e-25 117.1 55 94.5
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 4.4e-25 117.1 55 94.5
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 4.4e-25 117.1 55 94.5
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 4.4e-25 117.1 55 94.5
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 4.4e-25 117.1 55 94.5
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 4.4e-25 117.1 55 94.5
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 4.4e-25 117.1 55 94.5
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 4.4e-25 117.1 55 94.5
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.4e-25 117.1 55 94.5
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 4.4e-25 117.1 55 94.5
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 4.4e-25 117.1 55 94.5
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 5.7e-25 116.7 55 94.5
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 5.7e-25 116.7 55 94.5
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 5.7e-25 116.7 55 94.5
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 7.5e-25 116.3 55 94.5
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 9.8e-25 115.9 55 92.7
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 9.8e-25 115.9 55 92.7
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 94.5
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 94.5
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 94.5
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.3e-24 115.5 55 92.7
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.7e-24 115.2 55 90.9
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.7e-24 115.2 55 90.9
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.7e-24 115.2 55 90.9
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.7e-24 115.2 55 90.9
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 2.8e-24 114.4 55 94.5
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 2.8e-24 114.4 55 90.9
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 2.8e-24 114.4 55 90.9
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 2.8e-24 114.4 55 92.7
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 3.7e-24 114.0 55 90.9
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 3.7e-24 114.0 55 90.9
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.7e-24 114.0 55 90.9
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 3.7e-24 114.0 55 90.9
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 3.7e-24 114.0 55 90.9
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 3.7e-24 114.0 55 90.9
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 3.7e-24 114.0 55 90.9
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 3.7e-24 114.0 55 90.9
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 3.7e-24 114.0 55 90.9
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 3.7e-24 114.0 55 90.9
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.7e-24 114.0 55 90.9
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 3.7e-24 114.0 55 90.9
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 3.7e-24 114.0 55 90.9
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 4.9e-24 113.6 55 92.7
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 4.9e-24 113.6 55 92.7
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 4.9e-24 113.6 55 90.9
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 4.9e-24 113.6 55 92.7
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 4.9e-24 113.6 55 89.1
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 4.9e-24 113.6 55 89.1
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 4.9e-24 113.6 55 90.9
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 6.3e-24 113.2 55 89.1
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 6.3e-24 113.2 55 92.7
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 6.3e-24 113.2 55 92.7
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 8.3e-24 112.8 55 89.1
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 8.3e-24 112.8 55 92.7
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 8.3e-24 112.8 55 89.1
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 8.3e-24 112.8 55 90.9
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.1e-23 112.5 55 90.9
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.1e-23 112.5 55 90.9
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.1e-23 112.5 55 90.9
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.1e-23 112.5 55 90.9
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.4e-23 112.1 55 89.1
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 1.4e-23 112.1 55 90.9
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 1.4e-23 112.1 55 90.9
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.8e-23 111.7 55 90.9
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 1.8e-23 111.7 55 90.9
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 2.4e-23 111.3 55 89.1
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 2.4e-23 111.3 55 89.1
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.4e-23 111.3 55 87.3
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 2.4e-23 111.3 55 89.1
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 3.1e-23 110.9 55 89.1
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 3.1e-23 110.9 55 89.1
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 3.1e-23 110.9 55 89.1
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.1e-23 110.5 55 89.1
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 5.4e-23 110.2 55 89.1
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 5.4e-23 110.2 55 87.3
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 5.4e-23 110.2 55 85.5
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 5.4e-23 110.2 55 89.1
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 9.2e-23 109.4 55 87.3
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 9.2e-23 109.4 55 85.5
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.0e-21 105.9 55 78.2
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.1e-15 85.9 48 75.0
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.7e-14 81.3 40 90.0
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 4.3e-12 73.9 35 91.4
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.7e-08 62.0 35 74.3


User provided reference genes

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