Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 4.0e-29 130.6 59 100.0
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 4.1e-21 104.0 58 82.8
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 2.5e-18 94.7 58 67.2
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 5.5e-18 93.6 58 65.5
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 5.5e-18 93.6 58 63.8
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 2.1e-17 91.7 58 67.2
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 2.7e-17 91.3 59 64.4
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 2.7e-17 91.3 58 65.5
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 2.7e-17 91.3 58 63.8
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 3.6e-17 90.9 58 67.2
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 4.6e-17 90.5 58 63.8
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 4.6e-17 90.5 58 63.8
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.6e-17 90.5 58 63.8
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 4.6e-17 90.5 58 63.8
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 4.6e-17 90.5 58 63.8
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 6.1e-17 90.1 58 62.1
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 6.1e-17 90.1 58 63.8
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 7.9e-17 89.7 58 63.8
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 7.9e-17 89.7 58 63.8
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 7.9e-17 89.7 58 63.8
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 7.9e-17 89.7 58 63.8
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 1.0e-16 89.4 58 65.5
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 1.4e-16 89.0 58 63.8
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 1.4e-16 89.0 58 60.3
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.4e-16 89.0 58 65.5
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 1.8e-16 88.6 58 63.8
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 1.8e-16 88.6 58 62.1
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 2.3e-16 88.2 58 63.8
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 2.3e-16 88.2 58 62.1
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 2.3e-16 88.2 58 62.1
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 2.3e-16 88.2 58 62.1
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 3.0e-16 87.8 58 63.8
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 3.0e-16 87.8 58 65.5
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 3.0e-16 87.8 58 65.5
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 3.0e-16 87.8 58 65.5
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 3.0e-16 87.8 58 65.5
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 3.0e-16 87.8 58 65.5
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 3.0e-16 87.8 58 65.5
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 3.0e-16 87.8 58 65.5
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 3.0e-16 87.8 58 65.5
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 3.0e-16 87.8 58 65.5
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 3.9e-16 87.4 58 60.3
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 3.9e-16 87.4 58 60.3
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 3.9e-16 87.4 58 62.1
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 3.9e-16 87.4 58 62.1
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 3.9e-16 87.4 58 62.1
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.1e-16 87.0 58 62.1
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.1e-16 87.0 58 62.1
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.1e-16 87.0 58 62.1
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 5.1e-16 87.0 58 62.1
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 5.1e-16 87.0 58 58.6
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 5.1e-16 87.0 58 60.3
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 5.1e-16 87.0 58 63.8
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 6.7e-16 86.7 58 62.1
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 6.7e-16 86.7 58 62.1
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 6.7e-16 86.7 58 62.1
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 6.7e-16 86.7 58 62.1
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 6.7e-16 86.7 58 60.3
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 6.7e-16 86.7 58 60.3
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 8.8e-16 86.3 58 60.3
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 8.8e-16 86.3 58 58.6
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 8.8e-16 86.3 58 62.1
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 8.8e-16 86.3 58 58.6
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 8.8e-16 86.3 58 63.8
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 8.8e-16 86.3 58 58.6
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 8.8e-16 86.3 58 58.6
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 8.8e-16 86.3 58 63.8
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 8.8e-16 86.3 58 62.1
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 8.8e-16 86.3 58 60.3
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 8.8e-16 86.3 58 56.9
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 1.1e-15 85.9 58 60.3
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.1e-15 85.9 58 56.9
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 1.1e-15 85.9 58 62.1
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 1.5e-15 85.5 58 63.8
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 1.5e-15 85.5 58 60.3
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.5e-15 85.5 58 62.1
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 1.5e-15 85.5 58 62.1
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.5e-15 85.5 58 56.9
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 1.5e-15 85.5 58 58.6
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 1.5e-15 85.5 58 60.3
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.5e-15 85.5 58 56.9
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.9e-15 85.1 58 58.6
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 1.9e-15 85.1 58 58.6
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 1.9e-15 85.1 58 58.6
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.9e-15 85.1 58 60.3
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.9e-15 85.1 58 58.6
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.5e-15 84.7 58 60.3
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 2.5e-15 84.7 58 58.6
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 2.5e-15 84.7 58 56.9
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 2.5e-15 84.7 58 60.3
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 3.3e-15 84.3 58 58.6
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 3.3e-15 84.3 58 60.3
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 3.3e-15 84.3 58 60.3
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 4.3e-15 84.0 58 60.3
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 4.3e-15 84.0 58 60.3
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 5.7e-15 83.6 58 56.9
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 5.7e-15 83.6 58 55.2
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 5.7e-15 83.6 58 56.9
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 5.7e-15 83.6 58 56.9
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 7.4e-15 83.2 58 58.6
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 9.7e-15 82.8 58 56.9
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 1.7e-14 82.0 58 55.2
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 1.7e-14 82.0 58 56.9
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.7e-14 82.0 58 58.6
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 1.7e-14 82.0 58 55.2
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 1.7e-14 82.0 58 56.9
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 2.2e-14 81.6 58 58.6
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 2.8e-14 81.3 58 56.9
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 2.8e-14 81.3 58 56.9
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 4.8e-14 80.5 58 56.9
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 6.3e-14 80.1 58 58.6
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 6.3e-14 80.1 58 55.2
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.3e-14 80.1 58 55.2
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.3e-14 80.1 58 55.2
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 6.3e-14 80.1 58 55.2
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 1.1e-13 79.3 58 51.7
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 1.4e-13 79.0 58 51.7
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.8e-13 78.6 58 56.9
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 2.4e-13 78.2 58 58.6
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 4.1e-13 77.4 50 62.0
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.0e-12 75.1 58 50.0
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 7.7e-12 73.2 58 53.4
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 1.3e-11 72.4 58 50.0
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 1.3e-11 72.4 58 55.2
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 1.2e-09 65.9 54 53.7
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 2.1e-09 65.1 47 51.1
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 1.5e-07 58.9 115 31.3
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 2.0e-07 58.5 56 37.5
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 6.3e-06 53.5 31 67.7


User provided reference genes

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