Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 3907.1 1990 100.0
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2053.1 2051 56.8
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2051.2 2033 56.5
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2003.4 2073 55.3
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 1992.2 2042 54.8
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 1989.5 2038 54.7
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 1975.3 2032 54.9
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 1956.0 2068 54.0
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 1950.3 2044 54.0
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 1937.5 2039 54.3
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 1931.0 2047 54.0
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 1926.8 2085 52.8
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 1923.7 2042 54.1
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 1902.9 2038 53.9
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 1894.4 2054 53.0
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1892.1 2035 53.6
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 1890.5 2036 53.4
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 1884.4 2032 53.1
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1881.7 2048 53.1
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 1881.7 2035 53.1
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1870.1 2025 52.2
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 1869.7 2032 52.3
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1868.6 2038 52.4
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1866.7 2030 52.1
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 1863.2 2027 53.3
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 1859.7 2044 51.4
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 1859.3 2052 52.5
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 1855.5 2029 52.3
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 1854.3 2035 52.3
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 1851.3 2151 51.0
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 1850.1 2049 52.4
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 1848.6 2043 52.0
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 1846.2 2032 52.4
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1841.2 2056 52.6
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1833.5 2038 52.0
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 1831.6 2049 51.7
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 1831.6 2046 51.8
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 1829.7 2039 52.3
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 1827.8 2040 51.2
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 1826.2 2036 51.7
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 1825.1 2028 52.2
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1815.8 2054 51.8
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 1808.9 2042 51.4
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 1807.7 2041 51.1
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 1807.3 2041 51.0
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 1805.0 2024 51.3
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1800.4 2027 50.4
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 1800.0 2011 50.9
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 1798.5 2030 50.6
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 1796.2 2059 51.1
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 1793.5 2077 50.7
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 1790.0 2005 51.3
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 1782.7 2032 51.4
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1781.1 2074 50.8
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1774.6 2042 51.2
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 1773.1 2153 48.3
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 1771.9 2026 50.5
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 1771.5 2017 51.3
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 1762.7 2100 49.8
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1747.6 2013 51.0
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 1737.6 1887 52.8
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 1733.0 2133 48.3
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 1731.8 2118 49.6
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 1729.1 2014 48.8
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 1728.8 1999 50.8
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 1726.8 2005 50.8
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 1724.1 2033 50.1
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 1707.6 2010 50.5
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 1706.4 2005 50.1
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 1705.6 2010 50.4
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1698.7 2035 50.4
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 1697.2 2018 50.0
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1694.1 2007 50.7
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1684.1 2001 50.4
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1669.1 2008 49.9
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1669.1 2040 48.8
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1664.8 2038 49.4
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1662.9 2058 49.0
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1661.7 2030 49.3
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 1659.4 2025 49.4
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1656.0 2185 46.9
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1640.2 2015 49.1
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1637.1 2049 48.7
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1618.6 2011 48.1
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1613.6 1719 53.9
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1592.4 1925 48.9
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1570.8 2025 47.7
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1536.9 1821 49.1
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1531.5 1955 48.0
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1517.7 2006 47.4
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1517.3 1882 49.0
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1473.4 1702 50.3
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1459.5 1786 48.2
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1353.2 1628 49.0
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1342.4 1485 51.4
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1307.0 1456 52.4
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1291.6 1716 47.3
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1288.1 1362 53.5
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1195.3 1419 49.7
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1162.5 1220 55.6
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1120.5 1230 51.0
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 0.0e+00 1080.1 2147 36.1
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 1.3e-309 1067.4 2062 37.3
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 1.4e-298 1030.8 1171 50.7
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 2.2e-283 980.3 2163 34.4
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 6.7e-277 958.7 977 55.6
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 2.8e-259 900.2 776 61.7
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 6.8e-253 879.0 1028 49.6
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 5.4e-242 842.8 781 59.0
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 2.4e-234 817.4 783 57.5
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 4.7e-230 803.1 1991 33.4
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 9.6e-223 778.9 833 51.4
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 5.6e-199 699.9 1923 31.4
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.3e-198 698.7 1222 38.1
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 5.5e-186 656.8 1616 33.2
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 4.1e-181 640.6 997 42.0
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 6.5e-163 580.1 1015 38.8
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 5.9e-156 557.0 591 50.6
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.5e-146 525.8 428 61.2
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 3.6e-137 494.6 641 47.3
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.1e-125 456.4 320 68.4
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 5.6e-122 444.1 576 46.2
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 5.4e-117 427.6 417 57.8
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 1.1e-104 386.7 522 45.2
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.4e-104 385.6 810 36.4
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 7.6e-95 354.0 373 52.8
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 2.8e-81 308.9 509 43.2
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.1e-77 297.0 220 65.9
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 9.3e-77 293.9 294 54.8
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.6e-76 293.1 287 55.1
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 2.2e-70 272.7 211 64.5
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-69 270.4 1101 26.8
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 2.4e-64 252.7 408 42.2
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 6.9e-64 251.1 245 55.9
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 3.2e-61 242.3 167 70.7
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 8.8e-59 234.2 190 62.6
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 2.0e-58 233.0 164 68.3
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 7.4e-58 231.1 162 69.8
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 4.8e-57 228.4 160 69.4
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.7e-49 203.4 126 73.8
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 5.2e-43 181.8 587 28.4
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.2e-42 180.6 342 37.7
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 5.7e-42 178.3 214 49.1
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 1.7e-41 176.8 159 57.9
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 1.5e-37 163.7 314 35.7
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 4.2e-37 162.2 250 42.4
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 4.0e-35 155.6 446 31.2
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 4.4e-34 152.1 306 34.6
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 7.2e-29 134.8 222 38.3
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 7.2e-29 134.8 96 68.8
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 2.8e-28 132.9 67 85.1
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 8.8e-27 127.9 123 58.5
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 3.5e-23 115.9 323 32.5
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 7.5e-18 98.2 92 58.7
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 7.5e-18 98.2 92 58.7
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 2.2e-17 96.7 493 26.2
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 3.2e-16 92.8 160 41.2
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 4.1e-16 92.4 173 39.3
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 5.4e-16 92.0 57 70.2
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.0e-14 87.8 132 44.7
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 6.2e-12 78.6 44 75.0
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 6.2e-12 78.6 44 75.0
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 8.0e-12 78.2 128 39.1
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 4.0e-11 75.9 104 40.4
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 8.9e-11 74.7 67 61.2
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 3.4e-10 72.8 129 37.2
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 6.4e-09 68.6 91 45.1
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 1.9e-08 67.0 133 36.1


User provided reference genes

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