Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.7e-108 396.0 195 100.0
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 2.3e-76 289.3 193 71.0
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.8e-70 269.6 184 68.5
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 8.6e-68 260.8 184 67.9
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 7.3e-67 257.7 183 65.6
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 2.1e-66 256.1 184 65.8
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 6.1e-66 254.6 184 65.2
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 8.9e-65 250.8 184 64.7
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 1.2e-64 250.4 184 65.2
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.5e-64 250.0 184 64.7
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 2.6e-64 249.2 184 65.2
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 5.7e-64 248.1 184 63.0
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 9.8e-64 247.3 185 64.3
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 9.8e-64 247.3 189 63.0
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 4.1e-62 241.9 184 61.4
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 4.1e-62 241.9 184 62.0
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 7.0e-62 241.1 185 62.7
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 4.6e-61 238.4 185 63.2
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 1.0e-60 237.3 185 63.2
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 2.3e-60 236.1 184 59.2
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 3.9e-60 235.3 185 62.7
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.1e-59 233.8 184 60.3
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 1.5e-59 233.4 183 61.2
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.9e-59 233.0 184 60.9
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 1.9e-59 233.0 184 60.9
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.9e-59 233.0 184 60.9
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 2.5e-59 232.6 185 58.9
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 4.3e-59 231.9 184 61.4
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.2e-58 230.3 185 62.7
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 1.6e-58 229.9 183 60.7
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 1.6e-58 229.9 184 59.8
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 2.1e-58 229.6 183 61.2
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 4.7e-58 228.4 183 59.6
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 6.2e-58 228.0 183 61.2
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 6.2e-58 228.0 183 61.2
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 6.2e-58 228.0 183 61.2
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 8.0e-58 227.6 185 58.4
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 8.0e-58 227.6 183 59.6
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.4e-57 226.9 185 58.4
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 1.8e-57 226.5 184 60.3
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 2.3e-57 226.1 183 59.6
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 2.3e-57 226.1 183 59.6
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 3.1e-57 225.7 183 59.6
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 3.1e-57 225.7 184 56.5
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 4.0e-57 225.3 184 56.5
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 6.8e-57 224.6 190 56.8
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 8.9e-57 224.2 183 59.6
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 1.2e-56 223.8 183 59.6
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.5e-56 223.4 181 61.3
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 1.5e-56 223.4 183 57.9
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.5e-56 223.4 183 59.6
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.0e-56 223.0 183 58.5
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.0e-56 223.0 183 58.5
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.6e-56 222.6 183 59.6
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 3.4e-56 222.2 183 60.7
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.4e-56 222.2 183 60.7
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 4.4e-56 221.9 183 60.1
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 4.4e-56 221.9 183 57.9
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 5.8e-56 221.5 183 61.2
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 5.8e-56 221.5 183 59.6
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 5.8e-56 221.5 184 57.6
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 5.8e-56 221.5 184 59.2
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 7.5e-56 221.1 183 60.1
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 7.5e-56 221.1 183 60.1
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 7.5e-56 221.1 183 57.9
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 7.5e-56 221.1 150 68.0
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 1.3e-55 220.3 183 59.6
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.3e-55 220.3 183 58.5
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.3e-55 220.3 170 62.9
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.7e-55 219.9 184 58.7
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 2.9e-55 219.2 182 60.4
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 2.9e-55 219.2 183 57.4
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 4.9e-55 218.4 181 58.0
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 8.3e-55 217.6 180 60.6
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 8.3e-55 217.6 183 57.9
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.9e-54 216.5 183 57.4
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 2.4e-54 216.1 185 56.8
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 3.2e-54 215.7 183 57.9
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 5.4e-54 214.9 180 60.0
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 5.4e-54 214.9 185 56.8
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 7.0e-54 214.5 186 55.9
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 9.2e-54 214.2 185 55.7
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 1.2e-53 213.8 188 55.9
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.6e-53 213.4 129 82.2
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.6e-53 213.4 183 55.2
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 2.0e-53 213.0 183 58.5
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 3.5e-53 212.2 183 56.8
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 7.8e-53 211.1 183 56.8
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 7.8e-53 211.1 183 55.2
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 1.3e-52 210.3 187 53.5
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 1.7e-52 209.9 183 57.4
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 3.0e-52 209.1 187 53.5
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 3.0e-52 209.1 187 54.5
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 6.6e-52 208.0 187 53.5
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 8.6e-52 207.6 185 54.6
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 8.6e-52 207.6 185 54.1
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.1e-51 207.2 179 57.5
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 1.5e-51 206.8 186 55.4
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.9e-51 206.5 185 51.4
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 2.5e-51 206.1 187 53.5
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 3.3e-51 205.7 183 52.5
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 3.3e-51 205.7 187 52.9
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 3.3e-51 205.7 187 52.9
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 7.3e-51 204.5 183 54.6
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 3.6e-50 202.2 186 52.2
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 6.2e-50 201.4 186 52.2
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 1.4e-49 200.3 182 52.2
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 3.1e-49 199.1 186 52.2
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 6.8e-49 198.0 185 56.2
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 1.2e-48 197.2 165 60.0
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.6e-48 196.1 182 54.4
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 4.4e-48 195.3 205 48.3
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.2e-45 187.2 183 50.3
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.6e-45 186.8 183 51.9
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 3.0e-44 182.6 167 55.1
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 3.9e-44 182.2 148 55.4
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 3.9e-44 182.2 187 50.8
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.7e-42 175.3 150 54.7
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 3.1e-41 172.6 166 50.0
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.2e-40 170.6 204 44.6
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 2.6e-40 169.5 185 43.8
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 6.4e-39 164.9 194 46.4
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 8.4e-39 164.5 148 53.4
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.4e-38 162.9 185 45.9
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 1.3e-36 157.1 184 48.4
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.1e-35 154.1 187 44.4
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 2.1e-34 149.8 145 54.5
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.1e-33 146.0 150 48.7
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.2e-31 139.8 113 61.1
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 2.1e-29 133.3 104 59.6
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.9e-28 129.0 104 58.7
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 1.1e-22 110.9 154 41.6
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 2.4e-22 109.8 186 31.7
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 4.6e-21 105.5 98 57.1
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 3.3e-19 99.4 195 30.3
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 2.6e-16 89.7 80 56.2
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 6.4e-15 85.1 72 56.9
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 2.7e-13 79.7 181 28.2
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 1.8e-12 77.0 139 33.1
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 8.7e-12 74.7 73 49.3
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 1.9e-11 73.6 62 54.8
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 1.3e-10 70.9 80 51.2


User provided reference genes

Program Settings