Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0479G001 Amborella trichopoda HOM05D002848 ORTHO05D003043 8.8e-33 142.9 66 100.0
Hund24098 Selenicereus undatus HOM05D002848 ORTHO05D003043 7.0e-14 80.1 64 51.6
Nitab4.5_0000192g0040 Nicotiana tabacum HOM05D002848 ORTHO05D003043 1.2e-13 79.3 64 51.6
Nitab4.5_0000577g0100 Nicotiana tabacum HOM05D002848 ORTHO05D003043 1.2e-13 79.3 64 50.0
Peaxi162Scf00064g00626 Petunia axillaris HOM05D002848 ORTHO05D003043 2.0e-13 78.6 64 48.4
MBI05_g26506_MAGBIO Magnolia biondii HOM05D002848 ORTHO05D003043 4.5e-13 77.4 65 52.3
CDE08G1142 Ceratophyllum demersum HOM05D002848 ORTHO05D003043 5.9e-13 77.0 65 55.4
TAR381G0737 Trochodendron aralioides HOM05D002848 ORTHO05D003043 5.9e-13 77.0 65 47.7
Lalb_Chr23g0266241 Lupinus albus HOM05D002848 ORTHO05D003043 2.3e-12 75.1 59 52.5
Nn5g29271 Nelumbo nucifera HOM05D002848 ORTHO05D003043 2.3e-12 75.1 65 46.2
PGR083G2521 Punica granatum HOM05D002848 ORTHO05D003043 2.3e-12 75.1 60 51.7
Gohir.D02G097800 Gossypium hirsutum HOM05D002848 ORTHO05D003043 2.9e-12 74.7 65 47.7
Gorai.005G111400 Gossypium raimondii HOM05D002848 ORTHO05D003043 2.9e-12 74.7 65 47.7
Thecc.08G040800 Theobroma cacao HOM05D002848 ORTHO05D003043 3.9e-12 74.3 63 49.2
Ah.11g039460 Amaranthus hybridus HOM05D002848 ORTHO05D003043 6.6e-12 73.6 64 46.9
DCAR_013853 Daucus carota HOM05D002848 ORTHO05D003043 6.6e-12 73.6 58 46.6
PGSC0003DMG400029424 Solanum tuberosum HOM05D002848 ORTHO05D003043 6.6e-12 73.6 59 52.5
Duzib093G1695 Durio zibethinus HOM05D002848 ORTHO05D003043 1.1e-11 72.8 63 46.0
TAR625G0420 Trochodendron aralioides HOM05D002848 ORTHO05D003043 1.1e-11 72.8 63 46.0
Dinv40073 Davidia involucrata HOM05D002848 ORTHO05D003043 1.5e-11 72.4 65 49.2
Gohir.A02G088501 Gossypium hirsutum HOM05D002848 ORTHO05D003043 1.5e-11 72.4 65 46.2
Actinidia15403 Actinidia chinensis HOM05D002848 ORTHO05D003043 1.9e-11 72.0 58 48.3
Sopen12g031140 Solanum pennellii HOM05D002848 ORTHO05D003043 1.9e-11 72.0 59 50.8
CAN.G847.13 Capsicum annuum HOM05D002848 ORTHO05D003043 2.5e-11 71.6 59 50.8
Actinidia16964 Actinidia chinensis HOM05D002848 ORTHO05D003043 4.3e-11 70.9 58 48.3
CSS0049415 Camellia sinensis var. sinensis HOM05D002848 ORTHO05D003043 4.3e-11 70.9 58 50.0
Cfa013922 Carpinus fangiana HOM05D002848 ORTHO05D003043 4.3e-11 70.9 63 46.0
unitig_578.g16090 Utricularia gibba HOM05D002848 ORTHO05D003043 4.3e-11 70.9 58 51.7
Cc10_g01940 Coffea canephora HOM05D002848 ORTHO05D003043 5.6e-11 70.5 65 44.6
Potri.002G025100 Populus trichocarpa HOM05D002848 ORTHO05D003043 5.6e-11 70.5 61 45.9
vmacro21710 Vaccinium macrocarpon HOM05D002848 ORTHO05D003043 5.6e-11 70.5 58 50.0
Migut.C00819 Erythranthe guttata HOM05D002848 ORTHO05D003043 7.3e-11 70.1 63 46.0
Lalb_Chr08g0246141 Lupinus albus HOM05D002848 ORTHO05D003043 7.3e-11 70.1 62 51.6
SalBow7G4492 Salvia bowleyana HOM05D002848 ORTHO05D003043 7.3e-11 70.1 58 44.8
Oeu046254.1 Olea europaea HOM05D002848 ORTHO05D003043 9.5e-11 69.7 59 50.8
EL10Ac1g02255 Beta vulgaris HOM05D002848 ORTHO05D003043 1.2e-10 69.3 64 45.3
Thhalv10007764m.g Eutrema salsugineum HOM05D002848 ORTHO05D003043 1.6e-10 68.9 60 50.0
Potri.005G115901 Populus trichocarpa HOM05D002848 ORTHO05D003043 1.6e-10 68.9 65 44.6
Potri.005G236300 Populus trichocarpa HOM05D002848 ORTHO05D003043 1.6e-10 68.9 61 42.6
SGA_v2.0_scaffold92G28266 Striga asiatica HOM05D002848 ORTHO05D003043 1.6e-10 68.9 58 53.4
FvH4_2g38810 Fragaria vesca HOM05D002848 ORTHO05D003043 2.1e-10 68.6 57 49.1
FAN20G0280 Fragaria x ananassa HOM05D004047 ORTHO05D004772 2.1e-10 68.6 57 49.1
FAN27G1307 Fragaria x ananassa HOM05D002848 ORTHO05D003043 2.1e-10 68.6 57 49.1
Manes.18G015900 Manihot esculenta HOM05D002848 ORTHO05D003043 2.1e-10 68.6 57 47.4
Potri.007G013600 Populus trichocarpa HOM05D002848 ORTHO05D003043 2.1e-10 68.6 67 49.3
MELO3C010998.2 Cucumis melo HOM05D002848 ORTHO05D003043 2.8e-10 68.2 63 46.0
CsaV3_2G029390 Cucumis sativus L. HOM05D002848 ORTHO05D003043 2.8e-10 68.2 63 46.0
Nn6g32298 Nelumbo nucifera HOM05D002848 ORTHO05D003043 2.8e-10 68.2 62 45.2
Oeu007349.2 Olea europaea HOM05D002848 ORTHO05D003043 2.8e-10 68.2 58 46.6
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 2.8e-10 68.2 61 44.3
Sabra05G0182700 Salix brachista HOM05D002848 ORTHO05D003043 2.8e-10 68.2 61 42.6
MSTRG.1211 Avicennia marina HOM05D002848 ORTHO05D003043 3.6e-10 67.8 59 45.8
Cpa.g.sc26.22 Carica papaya HOM05D000113 ORTHO05D003010 3.6e-10 67.8 57 45.6
Eucgr.F01630 Eucalyptus grandis HOM05D002848 ORTHO05D003043 3.6e-10 67.8 60 45.0
Lalb_Chr11g0062001 Lupinus albus HOM05D002848 ORTHO05D003043 3.6e-10 67.8 61 50.8
Manes.18G016000 Manihot esculenta HOM05D002848 ORTHO05D003043 3.6e-10 67.8 57 47.4
QL02p010998 Quercus lobata HOM05D002848 ORTHO05D003043 3.6e-10 67.8 58 50.0
Rhsim06G0023800 Rhododendron simsii HOM05D002848 ORTHO05D003043 3.6e-10 67.8 58 48.3
Sabra05G0095000 Salix brachista HOM05D002848 ORTHO05D003043 3.6e-10 67.8 65 44.6
AUR62035722 Chenopodium quinoa HOM05D002848 ORTHO05D003043 4.7e-10 67.4 64 42.2
Haze_22606 Corylus avellana HOM05D002848 ORTHO05D003043 4.7e-10 67.4 57 49.1
Sabra07G0010500 Salix brachista HOM05D002848 ORTHO05D003043 4.7e-10 67.4 66 50.0
BcaC07g39005 Brassica carinata HOM05D002848 ORTHO05D003043 6.1e-10 67.0 59 49.2
A08p29640 Brassica napus HOM05D002848 ORTHO05D003043 6.1e-10 67.0 59 49.2
C08p19770 Brassica napus HOM05D002848 ORTHO05D003043 6.1e-10 67.0 59 49.2
BolC8t49614H Brassica oleracea HOM05D002848 ORTHO05D003043 6.1e-10 67.0 59 49.2
CiPaw.08G064200 Carya illinoinensis HOM05D002848 ORTHO05D003043 6.1e-10 67.0 57 47.4
Actinidia22990 Actinidia chinensis HOM05D002848 ORTHO05D003043 8.0e-10 66.6 64 48.4
Gohir.D01G099400 Gossypium hirsutum HOM05D002848 ORTHO05D003043 8.0e-10 66.6 62 41.9
Gorai.002G124700 Gossypium raimondii HOM05D002848 ORTHO05D003043 8.0e-10 66.6 62 41.9
Lj1g0005660 Lotus japonicus HOM05D002848 ORTHO05D003043 8.0e-10 66.6 59 45.8
CANSAT25G2982 Cannabis sativa HOM05D002848 ORTHO05D003043 1.0e-09 66.2 63 42.9
CiPaw.09G133400 Carya illinoinensis HOM05D002848 ORTHO05D003043 1.0e-09 66.2 64 43.8
AUR62035435 Chenopodium quinoa HOM05D002848 ORTHO05D003043 1.4e-09 65.9 64 42.2
COL.COLO4_21931 Corchorus olitorius HOM05D002848 ORTHO05D003043 1.4e-09 65.9 57 45.6
ECA233G1527 Erigeron canadensis HOM05D002848 ORTHO05D003043 1.4e-09 65.9 61 44.3
Carub.0001s1938 Capsella rubella HOM05D002848 ORTHO05D003043 1.8e-09 65.5 67 43.3
Glyma.02G049600 Glycine max HOM05D002848 ORTHO05D003043 1.8e-09 65.5 55 49.1
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 2.3e-09 65.1 63 46.0
Dinv31824 Davidia involucrata HOM05D002848 ORTHO05D003043 2.3e-09 65.1 62 45.2
Ah.00g000070 Amaranthus hybridus HOM05D002848 ORTHO05D003043 3.1e-09 64.7 63 41.3
RcHm_v2.0_Chr6g0302461 Rosa chinensis HOM05D002848 ORTHO05D003043 3.1e-09 64.7 57 45.6
arahy.Tifrunner.gnm1.ann1.0GB9DR Arachis hypogaea HOM05D002848 ORTHO05D003043 4.0e-09 64.3 61 44.3
arahy.Tifrunner.gnm1.ann1.H2AKHM Arachis hypogaea HOM05D002848 ORTHO05D003043 4.0e-09 64.3 61 44.3
Atru.chr13.328 Acer truncatum HOM05D002848 ORTHO05D003043 5.2e-09 63.9 57 42.1
BraA08t34900Z Brassica rapa HOM05D002848 ORTHO05D003043 5.2e-09 63.9 59 47.5
Duzib041G0763 Durio zibethinus HOM05D002848 ORTHO05D003043 5.2e-09 63.9 63 42.9
Lalb_Chr09g0321841 Lupinus albus HOM05D002848 ORTHO05D003043 5.2e-09 63.9 65 41.5
Psat0s3398g0400 Pisum sativum HOM05D002848 ORTHO05D003043 5.2e-09 63.9 60 45.0
GSVIVG01018802001 Vitis vinifera HOM05D002848 ORTHO05D003043 5.2e-09 63.9 65 43.1
Prupe.1G368900 Prunus persica HOM05D002848 ORTHO05D003043 6.8e-09 63.5 59 49.2
Sp1g17660 Schrenkiella parvula HOM05D002848 ORTHO05D003043 6.8e-09 63.5 64 45.3
Thecc.01G021000 Theobroma cacao HOM05D002848 ORTHO05D003043 6.8e-09 63.5 59 49.2
Duzib147G0092 Durio zibethinus HOM05D002848 ORTHO05D003043 8.9e-09 63.2 57 49.1
vmacro21915 Vaccinium macrocarpon HOM05D002848 ORTHO05D003043 8.9e-09 63.2 61 49.2
Haze_03792 Corylus avellana HOM05D002848 ORTHO05D003043 1.2e-08 62.8 62 41.9
Duzib116G0954 Durio zibethinus HOM05D002848 ORTHO05D003043 1.2e-08 62.8 62 40.3
Gohir.D06G001300 Gossypium hirsutum HOM05D002848 ORTHO05D003043 1.2e-08 62.8 57 47.4
Gorai.010G005700 Gossypium raimondii HOM05D002848 ORTHO05D003043 1.2e-08 62.8 57 47.4
Sc02g0008430 Simmondsia chinensis HOM05D002848 ORTHO05D003043 1.2e-08 62.8 62 48.4
Ca_13279_v3 Cicer arietinum L. HOM05D002848 ORTHO05D003043 1.5e-08 62.4 54 46.3
Gohir.A11G176500 Gossypium hirsutum HOM05D002848 ORTHO05D003043 1.5e-08 62.4 58 48.3
Sed0026959 Sechium edule HOM05D002848 ORTHO05D003043 1.5e-08 62.4 57 45.6
Medtr1g019120 Medicago truncatula HOM05D002848 ORTHO05D003043 2.0e-08 62.0 60 43.3
Zm00001eb067340 Zea mays HOM05D002848 ORTHO05D003043 2.0e-08 62.0 59 45.8
BcaB03g12895 Brassica carinata HOM05D002848 ORTHO05D003043 2.6e-08 61.6 63 44.4
A06p16060 Brassica napus HOM05D002848 ORTHO05D003043 2.6e-08 61.6 60 45.0
BraA06t24712Z Brassica rapa HOM05D002848 ORTHO05D003043 2.6e-08 61.6 60 45.0
Rhsim10G0213400 Rhododendron simsii HOM05D002848 ORTHO05D003043 2.6e-08 61.6 61 47.5
Cfa006959 Carpinus fangiana HOM05D002848 ORTHO05D003043 3.4e-08 61.2 62 38.7
Glyma.04G025900 Glycine max HOM05D002848 ORTHO05D003043 3.4e-08 61.2 54 46.3
VMungo1309G0824 Vigna mungo HOM05D002848 ORTHO05D003043 3.4e-08 61.2 61 41.0
Zm00001eb433000 Zea mays HOM05D002848 ORTHO05D003043 3.4e-08 61.2 60 46.7
Ca_19632_v3 Cicer arietinum L. HOM05D002848 ORTHO05D003043 4.4e-08 60.8 55 47.3
Gohir.D11G184300 Gossypium hirsutum HOM05D002848 ORTHO05D003043 4.4e-08 60.8 57 47.4
Gorai.007G196000 Gossypium raimondii HOM05D002848 ORTHO05D003043 4.4e-08 60.8 57 47.4
HanXRQChr12g0367651 Helianthus annuus HOM05D002848 ORTHO05D003043 4.4e-08 60.8 65 40.0
Lj4C28G12 Lonicera japonica HOM05D004047 ORTHO05D003043 4.4e-08 60.8 45 51.1
TWI53G0820 Tripterygium wilfordii HOM05D002848 ORTHO05D003043 4.4e-08 60.8 51 51.0
Aa31LG7G4370 Aethionema arabicum HOM05D004047 ORTHO05D003043 5.8e-08 60.5 64 42.2
Ciclev10000970m.g Citrus clementina HOM05D002848 ORTHO05D003043 5.8e-08 60.5 63 38.1
Aqoxy6G02321 Aquilegia oxysepala HOM05D002848 ORTHO05D003043 7.5e-08 60.1 66 40.9
BcaB07g32004 Brassica carinata HOM05D002848 ORTHO05D003043 7.5e-08 60.1 64 40.6
CARHR020360 Cardamine hirsuta HOM05D002848 ORTHO05D003043 7.5e-08 60.1 63 44.4
CiPaw.08G132900 Carya illinoinensis HOM05D002848 ORTHO05D003043 7.5e-08 60.1 66 39.4
Gohir.A01G112600 Gossypium hirsutum HOM05D002848 ORTHO05D003043 7.5e-08 60.1 61 37.7
PSO541G4561 Papaver somniferum HOM05D002848 ORTHO05D003043 7.5e-08 60.1 66 40.9
PSO675G8906 Papaver somniferum HOM05D002848 ORTHO05D003043 7.5e-08 60.1 66 40.9
BcaC05g25878 Brassica carinata HOM05D002848 ORTHO05D003043 9.8e-08 59.7 68 39.7
C05p18320 Brassica napus HOM05D002848 ORTHO05D003043 9.8e-08 59.7 68 39.7
BolC5t30542H Brassica oleracea HOM05D002848 ORTHO05D003043 9.8e-08 59.7 68 39.7
Phvul.009G015300 Phaseolus vulgaris HOM05D002848 ORTHO05D003043 9.8e-08 59.7 61 41.0
unitig_8.g4917 Utricularia gibba HOM05D000830 ORTHO05D002187 9.8e-08 59.7 48 50.0
Prupe.7G166800 Prunus persica HOM05D002848 ORTHO05D003043 1.3e-07 59.3 66 42.4
QL06p033603 Quercus lobata HOM05D002848 ORTHO05D003043 1.3e-07 59.3 65 43.1
AL1G32590 Arabidopsis lyrata HOM05D002848 ORTHO05D003043 1.7e-07 58.9 66 40.9
AT1G19860 Arabidopsis thaliana HOM05D002848 ORTHO05D003043 1.7e-07 58.9 65 40.0
MD08G1015700 Malus domestica HOM05D002848 ORTHO05D003043 1.7e-07 58.9 58 46.6
MD15G1014600 Malus domestica HOM05D002848 ORTHO05D003043 2.2e-07 58.5 57 42.1
Nitab4.5_0005721g0090 Nicotiana tabacum HOM05D002848 ORTHO05D003043 2.2e-07 58.5 51 45.1
CSS0044135 Camellia sinensis var. sinensis HOM05D002848 ORTHO05D003043 2.9e-07 58.2 57 43.9
CsaV3_6G046870 Cucumis sativus L. HOM05D002848 ORTHO05D003043 2.9e-07 58.2 49 51.0
Gohir.A06G005500 Gossypium hirsutum HOM05D002848 ORTHO05D003043 2.9e-07 58.2 57 43.9
Duzib187G1527 Durio zibethinus HOM05D002848 ORTHO05D003043 3.7e-07 57.8 49 51.0
Sed0009314 Sechium edule HOM05D002848 ORTHO05D003043 3.7e-07 57.8 54 46.3
Solyc12g089260.3 Solanum lycopersicum HOM05D002848 ORTHO05D003043 3.7e-07 57.8 31 67.7
HPP92_002103 Vanilla planifolia HOM05D002848 ORTHO05D003043 3.7e-07 57.8 49 46.9
Nitab4.5_0004254g0010 Nicotiana tabacum HOM05D002848 ORTHO05D030274 6.4e-07 57.0 65 40.0
SEGI_36244 Sequoiadendron giganteum HOM05D002848 ORTHO05D003043 8.3e-07 56.6 56 50.0
Oeu007053.1 Olea europaea HOM05D002848 ORTHO05D003043 1.9e-06 55.5 45 42.2
ClCG01G020100 Citrullus lanatus HOM05D002848 ORTHO05D003043 2.4e-06 55.1 57 43.9
MELO3C007883.2 Cucumis melo HOM05D002848 ORTHO05D003043 2.4e-06 55.1 49 49.0
Os04g0663200 Oryza sativa ssp. japonica HOM05D002848 ORTHO05D003043 2.4e-06 55.1 59 40.7
Hma1.2p1_0337F.1_g129100 Hydrangea macrophylla HOM05D002848 ORTHO05D003043 3.2e-06 54.7 33 63.6
Sed0014337 Sechium edule HOM05D002848 ORTHO05D003043 4.1e-06 54.3 61 41.0
arahy.Tifrunner.gnm1.ann1.9DZU8H Arachis hypogaea HOM05D002848 ORTHO05D003043 5.4e-06 53.9 65 36.9
ClCG01G020170 Citrullus lanatus HOM05D002848 ORTHO05D003043 5.4e-06 53.9 33 57.6
Glyma.02G049700 Glycine max HOM05D002848 ORTHO05D003043 5.4e-06 53.9 50 46.0
arahy.Tifrunner.gnm1.ann1.0H5DHB Arachis hypogaea HOM05D002848 ORTHO05D003043 7.0e-06 53.5 59 40.7
MELO3C007890.2 Cucumis melo HOM05D002848 ORTHO05D003043 7.0e-06 53.5 58 41.4


User provided reference genes

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