Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 4.3e-226 787.7 412 100.0
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 1.8e-139 500.0 354 69.8
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 8.8e-139 497.7 354 69.2
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 3.3e-138 495.7 317 76.0
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.3e-137 493.8 386 66.1
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 2.8e-137 492.7 381 66.4
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 6.3e-137 491.5 317 74.4
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.4e-136 490.3 353 69.7
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.4e-136 489.6 351 70.4
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 3.5e-135 485.7 353 68.0
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 7.7e-135 484.6 324 71.6
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 1.3e-134 483.8 327 70.9
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.3e-134 483.8 323 72.4
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 3.8e-134 482.3 324 70.4
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 8.5e-134 481.1 324 71.0
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 8.5e-134 481.1 324 70.1
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 8.5e-134 481.1 324 71.6
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 1.1e-133 480.7 319 71.8
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.5e-133 480.3 325 70.8
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.5e-133 480.3 325 70.8
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.5e-133 480.3 343 68.8
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.5e-133 480.3 319 71.5
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.5e-133 480.3 319 71.5
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 3.2e-133 479.2 323 72.4
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 7.2e-133 478.0 343 68.5
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 9.4e-133 477.6 317 72.9
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 9.4e-133 477.6 317 71.0
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.2e-132 477.2 324 71.6
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.6e-132 476.9 324 69.8
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.1e-132 476.5 314 72.0
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 2.1e-132 476.5 351 67.8
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 2.7e-132 476.1 394 61.9
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 2.7e-132 476.1 319 71.8
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 3.6e-132 475.7 325 70.8
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 4.7e-132 475.3 354 66.1
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 1.0e-131 474.2 408 59.8
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.4e-131 473.8 346 67.6
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.8e-131 473.4 408 60.0
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 2.3e-131 473.0 316 72.8
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 2.3e-131 473.0 345 67.5
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.3e-131 473.0 408 60.3
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 3.0e-131 472.6 404 59.7
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 4.0e-131 472.2 318 73.6
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 6.8e-131 471.5 319 70.8
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.5e-130 470.3 327 68.8
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.5e-130 470.3 335 68.4
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 2.6e-130 469.5 388 61.1
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 4.4e-130 468.8 347 66.6
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 4.4e-130 468.8 315 71.4
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 5.7e-130 468.4 322 70.2
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 5.7e-130 468.4 401 61.8
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 9.8e-130 467.6 324 69.1
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 9.8e-130 467.6 317 70.0
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.3e-129 467.2 316 71.2
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 6.3e-129 464.9 405 58.5
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 1.4e-128 463.8 378 61.6
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.8e-128 463.4 324 69.1
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.8e-128 463.4 321 69.5
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.1e-128 462.6 348 64.9
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 3.1e-128 462.6 319 68.3
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 4.1e-128 462.2 321 69.5
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 4.1e-128 462.2 345 65.5
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 5.4e-128 461.8 321 69.2
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 5.4e-128 461.8 321 69.2
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.2e-127 460.7 324 67.3
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 2.0e-127 459.9 321 68.8
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 3.5e-127 459.1 341 65.7
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 5.9e-127 458.4 324 67.9
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 7.7e-127 458.0 418 57.4
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 7.7e-127 458.0 345 65.5
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.3e-126 457.2 316 70.3
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 5.0e-126 455.3 319 69.9
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 6.5e-126 454.9 318 66.4
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 8.5e-126 454.5 419 56.8
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 8.5e-126 454.5 319 69.9
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 8.5e-126 454.5 319 69.9
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 1.9e-125 453.4 316 68.7
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 3.2e-125 452.6 318 68.2
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 3.2e-125 452.6 317 67.5
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 9.4e-125 451.1 318 68.2
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 9.4e-125 451.1 318 68.2
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 9.4e-125 451.1 317 66.6
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 2.1e-124 449.9 319 69.0
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 6.1e-124 448.4 316 67.4
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 8.0e-124 448.0 351 62.4
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 1.0e-123 447.6 318 67.3
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 1.0e-123 447.6 318 67.3
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 5.2e-123 445.3 323 65.9
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 2.6e-122 443.0 303 68.6
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 5.7e-122 441.8 316 66.5
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.7e-121 440.3 316 67.7
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 2.7e-119 433.0 292 71.6
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 5.9e-119 431.8 395 57.5
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.1e-117 427.6 322 65.2
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 7.5e-114 414.8 332 65.4
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 3.7e-113 412.5 291 68.4
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 4.9e-113 412.1 345 60.9
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 4.9e-113 412.1 368 60.6
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 8.3e-113 411.4 302 66.6
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 2.0e-111 406.8 318 61.6
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.0e-110 404.4 332 60.8
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.6e-108 397.1 317 62.1
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 2.8e-108 396.4 521 44.9
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.0e-107 394.4 270 70.0
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 1.0e-107 394.4 250 75.6
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 1.8e-107 393.7 269 69.1
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 2.3e-107 393.3 255 74.1
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 5.6e-101 372.1 249 73.1
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 9.5e-101 371.3 276 67.0
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.8e-99 367.1 318 56.6
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 1.2e-98 364.4 261 65.1
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 1.2e-98 364.4 353 55.2
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 1.3e-97 360.9 299 60.2
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.1e-95 353.6 317 55.2
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.0e-94 349.7 339 52.5
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 2.1e-92 343.6 319 54.2
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.6e-90 336.7 322 55.9
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 1.9e-88 330.5 207 77.8
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 5.8e-82 308.9 219 64.8
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 1.1e-80 304.7 218 66.5
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 2.1e-76 290.4 197 70.6
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.4e-74 283.1 266 54.5
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 7.4e-69 265.4 173 71.7
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 9.6e-69 265.0 210 63.8
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 8.1e-68 261.9 174 75.3
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 2.0e-66 257.3 184 70.1
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 3.5e-63 246.5 173 69.9
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.6e-61 239.2 245 52.7
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.0e-50 204.1 224 51.3
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 2.2e-44 184.1 117 70.1
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.8e-43 181.0 157 63.7
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 5.0e-41 172.9 307 34.9
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.7e-39 167.2 151 55.0
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 1.5e-34 151.4 315 32.4
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 1.7e-33 147.9 93 67.7
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 7.9e-31 139.0 75 86.7
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 1.6e-26 124.8 292 29.8
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 6.5e-25 119.4 97 51.5
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 5.3e-19 99.8 78 70.5
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 3.5e-18 97.1 184 33.7
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 7.7e-18 95.9 95 48.4
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.5e-13 81.6 48 75.0


User provided reference genes

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