Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0345G001 Amborella trichopoda HOM05D004819 ORTHO05D005654 1.8e-23 111.7 55 100.0
ATR0693G033 Amborella trichopoda HOM05D004819 ORTHO05D005654 1.8e-23 111.7 55 100.0
CDE02G0522 Ceratophyllum demersum HOM05D004819 ORTHO05D005654 1.8e-18 95.1 55 81.8
AUR62039265 Chenopodium quinoa HOM05D004819 ORTHO05D005654 1.1e-17 92.4 55 74.5
Rhsim04G0240100 Rhododendron simsii HOM05D004819 ORTHO05D005654 2.5e-17 91.3 55 78.2
MD16G1152500 Malus domestica HOM05D004819 ORTHO05D005654 3.3e-17 90.9 55 76.4
PGR004G0637 Punica granatum HOM05D004819 ORTHO05D005654 3.3e-17 90.9 55 74.5
FvH4_4g19930 Fragaria vesca HOM05D004819 ORTHO05D005654 5.7e-17 90.1 55 72.7
FAN07G2526 Fragaria x ananassa HOM05D004819 ORTHO05D005654 5.7e-17 90.1 55 72.7
FAN12G0990 Fragaria x ananassa HOM05D004819 ORTHO05D005654 5.7e-17 90.1 55 72.7
Ciclev10004336m.g Citrus clementina HOM05D004819 ORTHO05D005654 7.4e-17 89.7 55 74.5
CANSAT78G1713 Cannabis sativa HOM05D004819 ORTHO05D005654 9.6e-17 89.4 55 76.4
RcHm_v2.0_Chr4g0425571 Rosa chinensis HOM05D004819 ORTHO05D005654 1.3e-16 89.0 55 70.9
TAR365G0460 Trochodendron aralioides HOM05D004819 ORTHO05D005654 1.3e-16 89.0 55 76.4
GSVIVG01034978001 Vitis vinifera HOM05D004819 ORTHO05D005654 1.3e-16 89.0 55 76.4
Ca_21436_v3 Cicer arietinum L. HOM05D004819 ORTHO05D005654 1.6e-16 88.6 55 74.5
Nn4g25546 Nelumbo nucifera HOM05D004819 ORTHO05D005654 1.6e-16 88.6 55 76.4
Aqoxy2G02702 Aquilegia oxysepala HOM05D004819 ORTHO05D005654 2.1e-16 88.2 55 76.4
Prupe.1G115700 Prunus persica HOM05D004819 ORTHO05D005654 2.1e-16 88.2 55 74.5
Cpa.g.sc9.47 Carica papaya HOM05D004819 ORTHO05D005654 2.8e-16 87.8 55 72.7
Zm00001eb014900 Zea mays HOM05D004819 ORTHO05D005654 3.7e-16 87.4 55 76.4
Zm00001eb305610 Zea mays HOM05D004819 ORTHO05D005654 3.7e-16 87.4 55 76.4
Peaxi162Scf00228g00333 Petunia axillaris HOM05D004819 ORTHO05D005654 4.8e-16 87.0 55 70.9
Ah.05g176730 Amaranthus hybridus HOM05D004819 ORTHO05D005654 6.2e-16 86.7 55 70.9
PSO761G0636 Papaver somniferum HOM05D004819 ORTHO05D005654 6.2e-16 86.7 55 70.9
EL10Ac3g05522 Beta vulgaris HOM05D004819 ORTHO05D005654 8.2e-16 86.3 55 72.7
CiPaw.01G137100 Carya illinoinensis HOM05D004819 ORTHO05D005654 8.2e-16 86.3 55 72.7
Eucgr.H04055 Eucalyptus grandis HOM05D004819 ORTHO05D005654 8.2e-16 86.3 55 69.1
Os03g0310500 Oryza sativa ssp. japonica HOM05D004819 ORTHO05D005654 8.2e-16 86.3 55 74.5
Cc03_g00710 Coffea canephora HOM05D004819 ORTHO05D005654 1.1e-15 85.9 55 70.9
MELO3C006720.2 Cucumis melo HOM05D004819 ORTHO05D005654 1.1e-15 85.9 55 72.7
CsaV3_3G015230 Cucumis sativus L. HOM05D004819 ORTHO05D005654 1.1e-15 85.9 55 72.7
PSO210G2958 Papaver somniferum HOM05D004819 ORTHO05D005654 1.1e-15 85.9 55 70.9
Atru.chr4.3039 Acer truncatum HOM05D004819 ORTHO05D005654 1.4e-15 85.5 55 70.9
Lj4g0007943 Lotus japonicus HOM05D004819 ORTHO05D005654 1.4e-15 85.5 55 72.7
Hund03132 Selenicereus undatus HOM05D004819 ORTHO05D005654 1.4e-15 85.5 55 70.9
Sc09g0007260 Simmondsia chinensis HOM05D004819 ORTHO05D005654 1.4e-15 85.5 55 69.1
Manes.03G205800 Manihot esculenta HOM05D004819 ORTHO05D005654 1.8e-15 85.1 55 70.9
COL.COLO4_34600 Corchorus olitorius HOM05D004819 ORTHO05D005654 2.4e-15 84.7 52 71.2
Lj3C833T2 Lonicera japonica HOM05D004819 ORTHO05D005654 2.4e-15 84.7 55 70.9
Manes.15G000800 Manihot esculenta HOM05D004819 ORTHO05D005654 2.4e-15 84.7 55 69.1
Psat4g022840 Pisum sativum HOM05D004819 ORTHO05D005654 2.4e-15 84.7 55 70.9
Zm00001eb339670 Zea mays HOM05D004819 ORTHO05D005654 2.4e-15 84.7 55 74.5
AagrBONN_evm.TU.Sc2ySwM_362.583 Anthoceros agrestis HOM05D004819 ORTHO05D005654 3.1e-15 84.3 55 70.9
ClCG05G006610 Citrullus lanatus HOM05D004819 ORTHO05D005654 3.1e-15 84.3 55 70.9
Solyc01g058730.4 Solanum lycopersicum HOM05D004819 ORTHO05D005654 3.1e-15 84.3 55 69.1
PGSC0003DMG400001205 Solanum tuberosum HOM05D004819 ORTHO05D005654 3.1e-15 84.3 55 69.1
CSS0034063 Camellia sinensis var. sinensis HOM05D004819 ORTHO05D005654 4.0e-15 84.0 55 72.7
Phvul.003G115600 Phaseolus vulgaris HOM05D004819 ORTHO05D005654 4.0e-15 84.0 55 69.1
Sed0001798 Sechium edule HOM05D004819 ORTHO05D005654 4.0e-15 84.0 55 69.1
Actinidia40384 Actinidia chinensis HOM05D004819 ORTHO05D005654 5.3e-15 83.6 55 72.7
arahy.Tifrunner.gnm1.ann1.HD9JLY Arachis hypogaea HOM05D004819 ORTHO05D005654 5.3e-15 83.6 55 70.9
arahy.Tifrunner.gnm1.ann1.ZA4S8T Arachis hypogaea HOM05D004819 ORTHO05D005654 5.3e-15 83.6 55 70.9
Duzib212G0926 Durio zibethinus HOM05D004819 ORTHO05D005654 5.3e-15 83.6 52 69.2
TPR.G25430 Trifolium pratense HOM05D004819 ORTHO05D005654 5.3e-15 83.6 55 69.1
Cfa015302 Carpinus fangiana HOM05D004819 ORTHO05D005654 6.9e-15 83.2 55 69.1
Nitab4.5_0000177g0090 Nicotiana tabacum HOM05D004819 ORTHO05D005654 6.9e-15 83.2 55 67.3
Sopen01g024570 Solanum pennellii HOM05D004819 ORTHO05D005654 6.9e-15 83.2 55 69.1
Haze_01312 Corylus avellana HOM05D004819 ORTHO05D005654 9.0e-15 82.8 52 71.2
Glyma.07G238900 Glycine max HOM05D004819 ORTHO05D005654 9.0e-15 82.8 55 69.1
Glyma.17G034800 Glycine max HOM05D004819 ORTHO05D005654 9.0e-15 82.8 55 69.1
Nitab4.5_0000931g0050 Nicotiana tabacum HOM05D004819 ORTHO05D005654 1.2e-14 82.4 55 67.3
Sed0007022 Sechium edule HOM05D004819 ORTHO05D005654 1.2e-14 82.4 55 69.1
Potri.010G146800 Populus trichocarpa HOM05D004819 ORTHO05D005654 1.5e-14 82.0 55 67.3
vmacro08030 Vaccinium macrocarpon HOM05D004819 ORTHO05D005654 2.0e-14 81.6 55 69.1
Sabra10G0113000 Salix brachista HOM05D004819 ORTHO05D005654 2.6e-14 81.3 55 65.5
DCAR_030463 Daucus carota HOM05D004819 ORTHO05D005654 3.4e-14 80.9 55 67.3
TWI09G1587 Tripterygium wilfordii HOM05D004819 ORTHO05D005654 3.4e-14 80.9 55 67.3
VMungo1215G1911 Vigna mungo HOM05D004819 ORTHO05D005654 4.5e-14 80.5 52 69.2
Lalb_Chr07g0182051 Lupinus albus HOM05D004819 ORTHO05D005654 5.8e-14 80.1 55 65.5
Mapoly0066s0100 Marchantia polymorpha HOM05D004819 ORTHO05D005654 7.6e-14 79.7 55 67.3
Thecc.04G302500 Theobroma cacao HOM05D004819 ORTHO05D005654 7.6e-14 79.7 52 67.3
Pp3c5_14560 Physcomitrium patens HOM05D004819 ORTHO05D005654 1.0e-13 79.3 55 63.6
QL06p012610 Quercus lobata HOM05D004819 ORTHO05D005654 1.0e-13 79.3 52 67.3
Oeu046577.1 Olea europaea HOM05D004819 ORTHO05D005654 2.2e-13 78.2 52 63.5
SGA_v2.0_scaffold104G30069 Striga asiatica HOM05D004819 ORTHO05D005654 2.2e-13 78.2 55 65.5
MSTRG.10156 Avicennia marina HOM05D004819 ORTHO05D005654 2.9e-13 77.8 55 63.6
unitig_88.g27704 Utricularia gibba HOM05D002812 ORTHO05D005654 2.9e-13 77.8 55 61.8
Migut.G00071 Erythranthe guttata HOM05D004819 ORTHO05D005654 5.0e-13 77.0 55 61.8
Gohir.D10G179600 Gossypium hirsutum HOM05D004819 ORTHO05D005654 5.0e-13 77.0 52 63.5
Gorai.011G200900 Gossypium raimondii HOM05D004819 ORTHO05D005654 5.0e-13 77.0 52 63.5
SalBow8G2376 Salvia bowleyana HOM05D004819 ORTHO05D005654 6.5e-13 76.6 55 63.6
HanXRQChr02g0048601 Helianthus annuus HOM05D004819 ORTHO05D005654 8.4e-13 76.3 55 63.6
GSVIVG01034916001 Vitis vinifera HOM05D006035 ORTHO05D007155 2.5e-12 74.7 46 73.9
A01p21370 Brassica napus HOM05D004819 ORTHO05D005654 5.5e-12 73.6 54 66.7
BraA01t02042Z Brassica rapa HOM05D004819 ORTHO05D005654 5.5e-12 73.6 54 66.7
ECA233G5711 Erigeron canadensis HOM05D004819 ORTHO05D005654 5.5e-12 73.6 56 66.1
Zm00001eb269880 Zea mays HOM05D004819 ORTHO05D005654 7.1e-12 73.2 46 71.7
Zm00001eb331620 Zea mays HOM05D004819 ORTHO05D005654 7.1e-12 73.2 46 71.7
CARHR222550 Cardamine hirsuta HOM05D004819 ORTHO05D005654 9.3e-12 72.8 54 64.8
THA.LOC104802608 Tarenaya hassleriana HOM05D004819 ORTHO05D005654 1.2e-11 72.4 52 63.5
BcaC06g32994 Brassica carinata HOM05D004819 ORTHO05D005654 1.6e-11 72.0 54 64.8
BcaC06g33458 Brassica carinata HOM05D004819 ORTHO05D005654 1.6e-11 72.0 54 64.8
BcaC09g50317 Brassica carinata HOM05D004819 ORTHO05D005654 1.6e-11 72.0 54 64.8
A03p49650 Brassica napus HOM05D004819 ORTHO05D005654 1.6e-11 72.0 54 64.8
C07p47720 Brassica napus HOM05D004819 ORTHO05D005654 1.6e-11 72.0 54 64.8
BolC1t02613H Brassica oleracea HOM05D004819 ORTHO05D005654 1.6e-11 72.0 54 64.8
BolC7t45297H Brassica oleracea HOM05D004819 ORTHO05D005654 1.6e-11 72.0 54 64.8
BraA03t14064Z Brassica rapa HOM05D004819 ORTHO05D005654 1.6e-11 72.0 54 64.8
AL7G38910 Arabidopsis lyrata HOM05D004819 ORTHO05D005654 2.1e-11 71.6 54 63.0
AT4G16180 Arabidopsis thaliana HOM05D004819 ORTHO05D005654 2.1e-11 71.6 54 63.0
C01p26720 Brassica napus HOM05D004819 ORTHO05D005654 2.1e-11 71.6 54 63.0
Carub.0007s2536 Capsella rubella HOM05D004819 ORTHO05D005654 2.1e-11 71.6 54 63.0
Thhalv10024420m.g Eutrema salsugineum HOM05D004819 ORTHO05D005654 2.1e-11 71.6 54 63.0
Aa31LG10G5910 Aethionema arabicum HOM05D004819 ORTHO05D005654 2.7e-11 71.2 54 63.0
BcaNung00215 Brassica carinata HOM05D004819 ORTHO05D005654 3.5e-11 70.9 54 63.0
Sp7g14690 Schrenkiella parvula HOM05D004819 ORTHO05D005654 3.5e-11 70.9 54 63.0
Lsat_1_v5_gn_6_1101 Lactuca sativa HOM05D004819 ORTHO05D005654 6.1e-11 70.1 53 62.3
SMO298G0056 Selaginella moellendorffii HOM05D004819 ORTHO05D005654 2.3e-10 68.2 50 64.0
Psat0s6958g0040 Pisum sativum HOM05D004819 ORTHO05D005654 5.1e-10 67.0 46 65.2
Lsat_1_v5_gn_1_41600 Lactuca sativa HOM05D004819 ORTHO05D005654 5.7e-09 63.5 52 53.8
CBR_g61507 Chara braunii HOM05D004819 ORTHO05D005654 9.7e-09 62.8 55 50.9
Oeu052162.4 Olea europaea HOM05D004819 ORTHO05D005654 1.1e-07 59.3 41 58.5
HanXRQChr11g0353871 Helianthus annuus HOM05D004819 ORTHO05D005654 4.5e-06 53.9 52 51.9


User provided reference genes

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