Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 3.2e-254 881.3 464 100.0
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 5.4e-68 262.7 521 37.6
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 5.4e-60 236.1 533 35.8
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.6e-59 234.6 428 37.1
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 2.0e-59 234.2 526 34.4
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 4.6e-59 233.0 533 35.5
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 3.0e-58 230.3 523 35.4
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 8.6e-58 228.8 520 35.4
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 9.5e-57 225.3 521 34.9
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 1.2e-56 224.9 542 35.1
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.8e-56 223.8 492 36.4
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 1.0e-55 221.9 487 33.9
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 4.0e-55 219.9 520 35.2
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 5.2e-55 219.5 479 36.7
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 1.2e-54 218.4 507 34.9
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 5.8e-54 216.1 522 35.6
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 9.8e-54 215.3 544 34.4
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 1.7e-53 214.5 531 32.2
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 3.7e-53 213.4 526 33.5
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.2e-52 210.3 443 37.2
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 7.0e-52 209.1 505 33.9
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 9.2e-52 208.8 492 35.4
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.6e-51 208.0 541 32.5
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 6.0e-51 206.1 515 33.0
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 6.0e-51 206.1 531 33.5
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 7.8e-51 205.7 523 33.5
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 7.8e-51 205.7 547 32.2
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 1.3e-50 204.9 529 32.1
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 1.3e-50 204.9 516 33.7
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 1.3e-50 204.9 547 32.0
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 1.3e-50 204.9 482 32.6
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.5e-49 201.4 539 34.3
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 9.5e-49 198.7 417 36.0
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 2.1e-48 197.6 538 32.9
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 8.1e-48 195.7 508 31.5
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 1.1e-47 195.3 494 34.0
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 4.0e-47 193.4 523 32.9
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.0e-47 193.4 513 32.2
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 5.2e-47 193.0 481 32.6
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 1.2e-46 191.8 529 31.2
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 1.5e-46 191.4 499 31.9
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.5e-46 191.4 525 32.8
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.6e-46 190.7 558 30.3
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 7.5e-46 189.1 498 31.7
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 1.7e-45 188.0 495 30.7
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 2.9e-45 187.2 530 31.1
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 6.4e-45 186.0 513 32.2
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 6.4e-45 186.0 526 30.8
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 6.4e-45 186.0 529 32.1
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 5.4e-44 183.0 565 29.6
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 7.1e-44 182.6 541 32.0
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.6e-43 181.4 507 31.8
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 6.0e-43 179.5 535 30.8
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 6.0e-43 179.5 430 35.6
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 7.8e-43 179.1 530 30.8
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 5.1e-42 176.4 516 32.2
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 5.6e-41 172.9 494 30.4
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.1e-40 171.0 539 30.2
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.1e-40 171.0 482 30.9
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 3.6e-40 170.2 460 33.3
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 3.6e-40 170.2 460 33.3
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 8.1e-40 169.1 545 31.0
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 8.1e-40 169.1 529 30.2
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.4e-39 168.3 417 32.4
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.8e-39 167.9 465 31.6
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 2.3e-39 167.5 507 28.4
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 8.9e-39 165.6 485 30.1
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 1.5e-38 164.9 477 30.4
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 9.9e-38 162.2 515 28.5
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 1.3e-37 161.8 377 33.4
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 3.8e-37 160.2 539 28.8
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 3.8e-37 160.2 510 29.2
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 4.9e-37 159.8 460 30.9
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 4.9e-37 159.8 473 31.1
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.4e-36 158.3 500 28.6
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 1.4e-36 158.3 365 33.2
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 4.1e-36 156.8 519 28.1
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 5.4e-36 156.4 493 28.8
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 2.1e-35 154.5 493 29.2
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 6.6e-34 149.4 377 31.6
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 7.3e-33 146.0 473 28.1
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 7.3e-33 146.0 431 30.4
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 9.6e-33 145.6 531 27.5
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 1.2e-32 145.2 509 30.5
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 8.1e-32 142.5 469 30.7
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 1.8e-31 141.4 392 30.9
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.4e-31 141.0 490 27.3
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.9e-31 139.4 273 37.0
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 1.2e-30 138.7 501 26.3
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 3.4e-30 137.1 498 29.7
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 4.4e-30 136.7 536 28.2
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 5.8e-30 136.3 500 29.6
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 5.8e-30 136.3 508 27.6
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 2.9e-29 134.0 474 27.6
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 3.8e-29 133.7 457 29.5
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 1.6e-27 128.3 491 28.1
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 4.6e-27 126.7 413 28.8
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 1.1e-25 122.1 512 27.5
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 1.5e-25 121.7 475 29.1
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 1.9e-25 121.3 391 29.4
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 4.3e-25 120.2 459 28.1
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 2.1e-24 117.9 526 26.2
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 2.8e-24 117.5 507 28.0
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 6.2e-24 116.3 341 29.6
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 1.8e-23 114.8 472 26.7
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 4.0e-23 113.6 554 25.6
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 5.3e-23 113.2 409 29.6
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 9.0e-23 112.5 471 26.3
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 1.2e-22 112.1 471 26.5
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 2.0e-22 111.3 447 25.1
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 3.4e-22 110.5 358 27.7
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 7.6e-22 109.4 470 27.7
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 7.6e-22 109.4 193 40.4
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 3.8e-21 107.1 454 26.0
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 4.9e-21 106.7 287 30.3
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 8.4e-21 105.9 454 28.2
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 1.4e-20 105.1 358 29.6
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 5.4e-20 103.2 448 27.0
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 1.2e-19 102.1 448 27.0
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 7.9e-19 99.4 473 26.2
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 7.9e-19 99.4 258 34.9
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 1.0e-18 99.0 465 25.8
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 8.7e-18 95.9 524 26.3
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 4.3e-17 93.6 253 32.0
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 9.6e-17 92.4 298 29.2
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 2.8e-16 90.9 473 25.4
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 9.0e-15 85.9 168 32.1
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.0e-14 84.7 488 23.4
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 7.6e-14 82.8 495 23.0
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 1.1e-12 79.0 167 32.3
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 1.9e-12 78.2 150 31.3
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 5.5e-12 76.6 382 26.2
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.2e-11 75.5 325 22.5
Pp3c6_6740 Physcomitrium patens HOM05D019331 ORTHO05D026050 5.1e-10 70.1 318 23.9
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 6.7e-10 69.7 182 30.2
SEGI_28173 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 8.2e-08 62.8 193 26.9
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 4.0e-07 60.5 67 40.3
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 9.0e-07 59.3 151 30.5
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 4.5e-06 57.0 128 30.5
SEGI_31308 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 4.5e-06 57.0 92 40.2


User provided reference genes

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