Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0332G088 Amborella trichopoda HOM05D007963 ORTHO05D009967 5.8e-49 197.6 127 100.0
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 9.1e-10 67.4 40 75.0
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 2.0e-09 66.2 56 55.4
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 2.0e-09 66.2 55 54.5
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.6e-09 65.9 57 54.4
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 2.6e-09 65.9 56 53.6
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 2.6e-09 65.9 53 56.6
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 3.4e-09 65.5 42 69.0
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 3.4e-09 65.5 47 59.6
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 3.4e-09 65.5 47 59.6
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 4.5e-09 65.1 43 69.8
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 4.5e-09 65.1 62 48.4
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 4.5e-09 65.1 56 51.8
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 4.5e-09 65.1 58 50.0
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 5.9e-09 64.7 54 53.7
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 7.7e-09 64.3 56 51.8
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 7.7e-09 64.3 56 51.8
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 7.7e-09 64.3 54 53.7
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 1.7e-08 63.2 49 61.2
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 1.7e-08 63.2 49 61.2
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 2.2e-08 62.8 45 60.0
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 2.2e-08 62.8 55 52.7
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 2.9e-08 62.4 53 54.7
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 3.8e-08 62.0 50 56.0
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 3.8e-08 62.0 50 56.0
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 5.0e-08 61.6 49 55.1
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 6.5e-08 61.2 53 50.9
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 6.5e-08 61.2 56 46.4
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 8.5e-08 60.8 38 65.8
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 8.5e-08 60.8 53 52.8
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 8.5e-08 60.8 52 50.0
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 1.1e-07 60.5 38 68.4
Os03g0217000 Oryza sativa ssp. japonica HOM05D007963 ORTHO05D009967 1.1e-07 60.5 40 62.5
Zm00001eb400040 Zea mays HOM05D007963 ORTHO05D009967 1.4e-07 60.1 40 60.0
Migut.B01286 Erythranthe guttata HOM05D007963 ORTHO05D009967 1.9e-07 59.7 49 53.1
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 1.9e-07 59.7 50 54.0
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 1.9e-07 59.7 53 52.8
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 2.5e-07 59.3 39 64.1
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 3.2e-07 58.9 49 57.1
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 3.2e-07 58.9 51 54.9
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 3.2e-07 58.9 53 47.2
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 4.2e-07 58.5 49 55.1
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 7.2e-07 57.8 52 51.9
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 7.2e-07 57.8 38 63.2
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 9.4e-07 57.4 53 50.9
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 9.4e-07 57.4 38 63.2
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 9.4e-07 57.4 38 63.2
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.2e-06 57.0 52 51.9
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 1.2e-06 57.0 52 51.9
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 1.2e-06 57.0 52 51.9
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.2e-06 57.0 52 51.9
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 1.2e-06 57.0 52 51.9
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 1.2e-06 57.0 53 50.9
Mapoly0032s0107 Marchantia polymorpha HOM05D025110 ORTHO05D009967 1.2e-06 57.0 51 52.9
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 1.2e-06 57.0 37 67.6
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 1.6e-06 56.6 52 48.1
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 1.6e-06 56.6 56 44.6
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 2.1e-06 56.2 55 49.1
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 2.7e-06 55.8 40 62.5
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 2.7e-06 55.8 52 48.1
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 2.7e-06 55.8 52 48.1
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 2.7e-06 55.8 52 48.1
Pp3c24_5190 Physcomitrium patens HOM05D025110 ORTHO05D009967 2.7e-06 55.8 45 57.8
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 3.6e-06 55.5 37 64.9
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 4.7e-06 55.1 37 64.9
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 6.1e-06 54.7 52 50.0
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 6.1e-06 54.7 37 67.6
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 6.1e-06 54.7 49 49.0
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 6.1e-06 54.7 38 65.8
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 7.9e-06 54.3 48 50.0


User provided reference genes

Program Settings