Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 1.8e-156 555.8 276 100.0
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 9.5e-89 330.9 266 59.4
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 4.7e-88 328.6 269 60.2
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 8.9e-87 324.3 276 59.4
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 2.0e-86 323.2 270 58.9
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 7.6e-86 321.2 278 57.9
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 2.2e-85 319.7 269 58.4
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 6.4e-85 318.2 269 58.4
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 6.4e-85 318.2 266 57.9
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.1e-84 317.4 280 57.9
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 1.4e-84 317.0 266 57.5
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 2.4e-84 316.2 269 59.9
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 9.2e-84 314.3 272 56.6
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 2.1e-83 313.2 268 57.8
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 2.1e-83 313.2 272 56.2
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 6.0e-83 311.6 232 65.1
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 7.8e-83 311.2 283 57.2
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 1.7e-82 310.1 272 57.0
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 8.7e-82 307.8 268 55.2
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 8.7e-82 307.8 268 56.7
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 8.7e-82 307.8 268 56.3
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 8.7e-82 307.8 268 56.7
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 8.7e-82 307.8 268 56.7
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 2.5e-81 306.2 273 55.7
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 4.3e-81 305.4 272 54.8
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 7.3e-81 304.7 268 57.1
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 2.8e-80 302.8 227 63.0
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 2.8e-80 302.8 271 56.1
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 8.1e-80 301.2 268 56.0
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 8.1e-80 301.2 269 56.9
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 1.4e-79 300.4 269 55.4
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 2.4e-79 299.7 273 55.7
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 4.0e-79 298.9 268 56.3
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 4.0e-79 298.9 269 56.9
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 5.2e-79 298.5 269 56.9
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 1.2e-78 297.4 269 57.2
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 1.5e-78 297.0 266 53.8
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 1.5e-78 297.0 269 55.4
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 2.6e-78 296.2 228 62.7
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 5.8e-78 295.0 269 53.9
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 5.8e-78 295.0 268 53.7
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.3e-77 293.9 277 53.1
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.3e-77 293.9 277 53.1
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 2.2e-77 293.1 269 55.8
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 6.4e-77 291.6 277 54.2
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 6.4e-77 291.6 269 52.8
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 8.4e-77 291.2 273 54.9
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.1e-76 290.8 269 53.9
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 1.1e-76 290.8 270 54.8
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 1.9e-76 290.0 268 54.9
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 1.9e-76 290.0 271 54.6
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 2.4e-76 289.7 224 62.5
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 9.3e-76 287.7 271 54.6
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 1.2e-75 287.3 229 60.3
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.6e-75 287.0 277 53.1
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 1.6e-75 287.0 233 57.9
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 1.6e-75 287.0 276 53.6
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 2.7e-75 286.2 220 60.9
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 2.7e-75 286.2 229 58.1
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 3.5e-75 285.8 279 52.7
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 4.6e-75 285.4 268 54.5
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 6.0e-75 285.0 276 52.5
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 1.3e-74 283.9 272 51.5
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.7e-74 283.5 274 51.5
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 5.1e-74 282.0 275 53.1
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 6.6e-74 281.6 219 60.7
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 1.1e-73 280.8 224 61.2
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.1e-73 280.8 223 61.0
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 7.3e-73 278.1 244 55.3
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 9.6e-73 277.7 224 59.8
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 9.6e-73 277.7 219 59.8
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.1e-72 276.6 275 51.3
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 3.6e-72 275.8 231 57.6
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 4.8e-72 275.4 224 59.4
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 6.2e-72 275.0 223 60.1
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 1.4e-71 273.9 224 57.6
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 1.8e-71 273.5 244 54.9
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 1.8e-71 273.5 244 54.9
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 4.0e-71 272.3 279 50.9
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 5.3e-71 271.9 221 59.7
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 6.9e-71 271.6 231 56.7
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 1.5e-70 270.4 246 54.5
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 1.5e-70 270.4 246 54.5
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 1.5e-70 270.4 246 54.5
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 2.6e-70 269.6 217 59.4
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 4.5e-70 268.9 220 57.7
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 5.8e-70 268.5 225 58.7
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 9.9e-70 267.7 185 66.5
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.9e-69 265.4 226 56.6
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 1.9e-68 263.5 218 58.3
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 1.9e-68 263.5 218 58.3
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.6e-67 260.4 252 52.0
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 2.1e-67 260.0 210 56.7
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 4.6e-67 258.8 218 56.9
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 6.0e-67 258.5 210 55.2
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 1.0e-66 257.7 218 56.4
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 1.8e-66 256.9 218 56.0
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 4.8e-64 248.8 214 55.1
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 6.9e-63 245.0 272 47.1
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 1.2e-62 244.2 208 57.2
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 3.4e-62 242.7 216 55.1
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 8.4e-61 238.0 319 41.1
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 2.1e-59 233.4 219 52.1
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 1.3e-58 230.7 219 51.6
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 1.6e-56 223.8 467 32.5
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 4.0e-55 219.2 207 51.2
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 1.0e-50 204.5 219 45.7
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 5.1e-50 202.2 173 57.2
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 5.0e-45 185.7 211 42.7
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.1e-41 174.5 161 55.9
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 3.1e-39 166.4 120 65.8
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 4.7e-35 152.5 117 59.0
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.5e-30 137.5 112 57.1
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 2.0e-30 137.1 151 47.7
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 2.6e-30 136.7 108 58.3
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 1.0e-29 134.8 116 56.0
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 2.5e-28 130.2 117 55.6
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 4.7e-27 125.9 99 57.6
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 3.0e-26 123.2 128 49.2
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 1.4e-23 114.4 84 64.3
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 3.5e-22 109.8 237 28.7
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 8.8e-10 68.6 66 50.0
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 8.8e-10 68.6 66 50.0
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 5.7e-09 65.9 100 40.0
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.4e-07 61.2 81 39.5
Peaxi162Scf00473g00003 Petunia axillaris HOM05D002624 ORTHO05D002796 5.9e-06 55.8 47 51.1
Lj3g0012925 Lotus japonicus HOM05D002624 ORTHO05D002796 7.7e-06 55.5 70 37.1
Nitab4.5_0000771g0080 Nicotiana tabacum HOM05D002624 ORTHO05D002796 7.7e-06 55.5 75 37.3


User provided reference genes

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