Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 2.5e-110 402.1 203 100.0
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 4.7e-85 318.2 203 81.3
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 4.4e-83 311.6 207 79.2
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 4.4e-83 311.6 203 77.8
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 5.8e-83 311.2 210 79.5
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.2e-82 309.3 210 79.0
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 2.2e-82 309.3 208 77.9
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 6.4e-82 307.8 210 75.7
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 8.3e-82 307.4 210 78.1
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 8.3e-82 307.4 204 78.9
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.1e-81 307.0 215 77.2
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.1e-81 307.0 205 77.6
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 1.4e-81 306.6 214 76.2
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 1.4e-81 306.6 213 75.6
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.4e-81 306.6 214 78.0
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.4e-81 305.8 215 76.7
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.4e-81 305.8 211 75.4
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 2.4e-81 305.8 207 76.8
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 3.2e-81 305.4 206 77.2
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 4.1e-81 305.1 206 74.8
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 5.4e-81 304.7 208 76.0
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 5.4e-81 304.7 208 76.0
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 5.4e-81 304.7 207 75.8
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 7.0e-81 304.3 214 77.1
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 7.0e-81 304.3 211 76.3
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 7.0e-81 304.3 214 75.7
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 7.0e-81 304.3 210 76.2
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 7.0e-81 304.3 208 76.0
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 7.0e-81 304.3 214 75.7
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 9.2e-81 303.9 213 74.6
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 9.2e-81 303.9 205 78.0
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.2e-80 303.5 210 75.2
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.2e-80 303.5 212 75.0
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 1.2e-80 303.5 213 74.6
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.6e-80 303.1 212 77.8
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.6e-80 303.1 212 75.5
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 1.6e-80 303.1 211 76.3
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.6e-80 303.1 214 74.3
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 2.0e-80 302.8 211 76.8
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 2.0e-80 302.8 210 75.7
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 2.7e-80 302.4 206 75.7
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.7e-80 302.4 207 76.3
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.7e-80 302.4 207 76.3
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.7e-80 302.4 211 74.4
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 3.5e-80 302.0 213 76.1
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 4.6e-80 301.6 204 77.0
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 4.6e-80 301.6 208 76.4
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 6.0e-80 301.2 208 76.4
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 6.0e-80 301.2 210 75.7
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 6.0e-80 301.2 207 75.8
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 6.0e-80 301.2 211 75.4
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 7.8e-80 300.8 213 77.0
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 7.8e-80 300.8 212 75.5
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 1.0e-79 300.4 208 74.0
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 1.0e-79 300.4 209 75.1
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 1.0e-79 300.4 208 76.0
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 1.3e-79 300.1 212 73.6
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 1.7e-79 299.7 221 73.3
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 1.7e-79 299.7 206 75.7
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.7e-79 299.7 148 95.9
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.7e-79 299.7 207 76.3
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 2.3e-79 299.3 216 73.6
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.3e-79 299.3 207 75.8
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 3.0e-79 298.9 207 76.3
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 3.0e-79 298.9 210 73.8
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 3.9e-79 298.5 207 77.3
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 3.9e-79 298.5 205 79.0
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 3.9e-79 298.5 203 76.4
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 3.9e-79 298.5 212 73.6
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 6.6e-79 297.7 212 73.1
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 6.6e-79 297.7 215 73.5
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 6.6e-79 297.7 216 72.2
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 8.6e-79 297.4 208 74.0
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 8.6e-79 297.4 214 74.3
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.1e-78 297.0 209 74.2
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 2.5e-78 295.8 208 75.0
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 2.5e-78 295.8 208 74.0
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 3.3e-78 295.4 215 73.0
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 3.3e-78 295.4 206 72.8
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 3.3e-78 295.4 213 73.7
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 3.3e-78 295.4 208 75.0
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 3.3e-78 295.4 203 74.4
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 5.6e-78 294.7 206 74.8
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 5.6e-78 294.7 208 74.5
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 9.5e-78 293.9 206 73.3
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 1.6e-77 293.1 226 73.5
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.6e-77 293.1 205 74.6
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 3.6e-77 292.0 209 76.1
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 4.7e-77 291.6 209 74.2
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 6.2e-77 291.2 158 88.6
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 6.2e-77 291.2 215 74.0
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 8.1e-77 290.8 186 79.0
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 8.1e-77 290.8 169 84.0
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 8.1e-77 290.8 216 71.8
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 1.1e-76 290.4 210 71.9
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.4e-76 290.0 174 80.5
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.8e-76 289.7 157 88.5
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 3.1e-76 288.9 206 73.3
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 3.1e-76 288.9 204 74.5
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 4.0e-76 288.5 177 81.4
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 4.0e-76 288.5 211 72.0
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 6.8e-76 287.7 208 72.1
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 6.8e-76 287.7 206 70.9
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 8.9e-76 287.3 185 78.4
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.5e-75 286.6 205 73.2
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 2.6e-75 285.8 207 73.4
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 3.4e-75 285.4 211 73.0
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 4.4e-75 285.0 188 77.1
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 4.4e-75 285.0 188 77.1
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 4.4e-75 285.0 202 73.3
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 5.8e-75 284.6 178 79.2
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 5.8e-75 284.6 187 77.0
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 5.8e-75 284.6 187 77.0
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 5.8e-75 284.6 210 73.8
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 7.5e-75 284.3 148 91.2
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 9.8e-75 283.9 210 72.4
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 4.9e-74 281.6 207 71.5
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.4e-73 280.0 203 72.9
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.4e-73 280.0 203 72.9
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.4e-73 279.3 203 71.9
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 5.4e-73 278.1 203 71.4
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 7.1e-73 277.7 195 73.8
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 3.0e-71 272.3 202 68.8
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 3.0e-71 272.3 205 71.2
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 5.1e-71 271.6 205 73.2
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 5.1e-71 271.6 205 73.2
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.9e-70 269.6 146 85.6
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.3e-70 268.9 211 66.4
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 4.3e-70 268.5 202 69.3
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 3.6e-69 265.4 192 74.0
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 8.1e-69 264.2 202 71.3
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 3.1e-68 262.3 189 74.6
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 6.8e-68 261.2 150 82.7
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 6.8e-68 261.2 150 82.7
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 8.9e-68 260.8 174 73.6
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.2e-67 260.4 206 66.5
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 4.9e-66 255.0 209 67.5
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 8.4e-66 254.2 178 71.9
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 8.4e-66 254.2 194 70.6
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 3.2e-65 252.3 210 67.6
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 7.8e-64 247.7 187 72.2
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 2.6e-59 232.6 171 71.9
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 3.8e-58 228.8 141 77.3
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 2.7e-56 222.6 214 61.2
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 2.7e-56 222.6 204 60.3
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 1.7e-55 219.9 148 70.3
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.9e-50 202.6 208 57.2
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.8e-44 183.3 213 54.0
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 8.4e-42 174.5 92 87.0
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.3e-37 160.6 205 48.8
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 3.2e-33 146.0 75 92.0
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 1.9e-17 93.6 100 57.0
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 6.1e-16 88.6 100 56.0
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 7.9e-16 88.2 100 57.0
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 3.1e-12 76.3 78 53.8


User provided reference genes

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