Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 7.7e-284 979.9 540 100.0
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.0e-142 511.1 488 56.1
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 6.8e-139 498.4 491 55.0
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 3.7e-137 492.7 491 53.2
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 2.7e-135 486.5 491 53.0
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.3e-134 484.2 478 53.8
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 5.0e-134 482.3 492 52.2
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 8.6e-134 481.5 492 52.6
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.1e-133 481.1 492 52.8
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.1e-133 481.1 492 53.3
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.5e-133 480.7 492 53.3
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.3e-133 479.6 492 53.0
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 2.1e-132 476.9 489 53.4
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.8e-132 476.5 492 52.2
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.8e-132 476.5 492 52.2
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 2.3e-131 473.4 481 52.6
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 2.3e-131 473.4 477 54.3
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 6.8e-131 471.9 492 52.2
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.5e-130 470.7 491 51.1
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.6e-130 469.9 489 53.0
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 4.4e-130 469.2 489 52.8
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.4e-130 469.2 489 52.8
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 5.7e-130 468.8 493 50.7
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 7.5e-130 468.4 492 51.8
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 3.7e-129 466.1 487 51.7
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 6.3e-129 465.3 477 52.8
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-128 464.5 477 52.8
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.8e-128 463.8 489 52.4
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 7.0e-128 461.8 497 51.5
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.2e-127 461.1 493 50.9
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 2.0e-127 460.3 492 52.0
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 2.7e-127 459.9 504 52.2
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.8e-127 458.4 490 52.2
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.0e-126 458.0 490 51.4
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.3e-126 456.8 504 49.6
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 5.6e-125 452.2 496 52.4
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 5.6e-125 452.2 496 52.4
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 7.3e-125 451.8 498 52.4
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 2.1e-124 450.3 495 51.5
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 3.6e-124 449.5 490 51.2
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.0e-123 448.0 531 48.4
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.5e-122 444.1 489 51.3
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.3e-121 441.0 520 48.1
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.9e-121 439.9 493 49.9
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 3.7e-121 439.5 492 49.4
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 4.9e-121 439.1 495 49.9
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 6.4e-121 438.7 491 48.9
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 1.4e-120 437.6 475 49.3
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 4.1e-120 436.0 494 50.0
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 5.4e-120 435.6 493 48.7
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 9.2e-120 434.9 471 49.7
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 6.0e-119 432.2 468 49.1
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.0e-118 431.4 488 48.6
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.7e-118 430.6 502 48.0
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.5e-117 427.6 490 48.8
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 7.3e-117 425.2 493 48.3
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.6e-116 424.1 494 49.0
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 8.9e-115 418.3 474 47.7
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 8.9e-115 418.3 496 48.2
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.3e-113 414.5 396 54.0
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 1.3e-113 414.5 558 44.3
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 2.4e-112 410.2 491 47.3
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 4.1e-112 409.5 477 50.5
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 2.1e-111 407.1 483 45.8
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 3.5e-111 406.4 489 45.4
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.3e-109 398.7 460 46.3
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 9.5e-109 398.3 439 46.5
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 2.0e-106 390.6 515 45.6
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.9e-104 384.0 489 45.4
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.9e-104 384.0 440 47.3
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 3.2e-104 383.3 406 50.2
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 2.7e-103 380.2 497 45.9
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 5.1e-102 375.9 511 43.2
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 6.8e-99 365.5 430 47.9
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 1.2e-98 364.8 486 43.2
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.0e-98 364.0 373 52.8
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.3e-86 323.9 322 53.4
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 2.8e-84 317.0 309 53.4
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 4.0e-83 313.2 317 53.6
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.4e-80 304.7 427 41.9
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 6.0e-79 299.3 427 41.5
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 7.6e-74 282.3 374 43.0
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.1e-72 278.5 476 37.4
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 1.9e-69 267.7 451 36.8
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.0e-65 255.4 415 37.6
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 4.9e-65 253.1 420 37.4
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 3.5e-63 246.9 434 37.6
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.3e-62 245.0 412 37.6
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.1e-62 243.0 421 38.0
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 4.3e-61 240.0 410 35.9
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 9.7e-61 238.8 460 36.1
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.3e-60 238.4 436 36.9
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.1e-59 235.3 459 35.5
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.4e-59 235.0 428 37.4
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.4e-59 234.2 428 37.1
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.2e-58 231.9 377 39.0
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 1.5e-58 231.5 422 36.0
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.6e-58 230.7 435 36.6
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 3.4e-58 230.3 471 35.9
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 7.7e-58 229.2 354 41.8
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-57 228.4 426 34.7
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.3e-57 228.4 457 36.3
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.3e-57 228.4 429 36.4
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.7e-57 228.0 430 34.0
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.7e-57 228.0 418 36.4
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 3.2e-56 223.8 421 36.3
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 3.2e-56 223.8 425 36.2
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 3.2e-56 223.8 368 38.9
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 5.5e-56 223.0 435 35.9
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.2e-55 221.9 421 36.1
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 6.1e-55 219.5 413 36.8
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.8e-54 218.0 348 41.4
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 2.2e-52 211.1 425 35.3
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 6.3e-52 209.5 437 35.0
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 8.2e-52 209.1 425 35.1
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.4e-51 208.4 425 34.1
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.4e-51 207.6 239 46.9
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 7.7e-50 202.6 478 32.8
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 2.2e-49 201.1 372 34.9
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 2.9e-49 200.7 426 33.3
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 1.9e-48 198.0 422 31.3
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.5e-48 197.6 389 33.4
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.6e-47 193.7 413 32.4
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.7e-47 193.4 374 34.5
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.0e-46 192.2 424 33.3
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 1.4e-46 191.8 384 36.7
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 2.8e-44 184.1 455 31.0
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.2e-42 178.7 210 49.0
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 3.1e-35 154.1 384 28.9
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 9.1e-35 152.5 380 32.1
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.5e-33 146.4 407 29.5
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.9e-32 144.8 281 32.4
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 4.8e-28 130.2 152 47.4
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 6.3e-28 129.8 239 36.4
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 1.4e-27 128.6 385 27.8
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 2.4e-27 127.9 133 48.1
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.0e-26 124.8 270 33.0
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.5e-26 123.6 265 32.8
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 7.7e-26 122.9 150 43.3
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 9.4e-24 115.9 221 34.8
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 8.8e-22 109.4 133 42.9
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 1.7e-20 105.1 190 37.9
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 1.7e-20 105.1 95 57.9
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 8.3e-20 102.8 127 42.5
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 1.1e-19 102.4 155 39.4
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 1.4e-19 102.1 155 38.7
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 1.4e-19 102.1 106 49.1
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 6.6e-17 93.2 136 41.2
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.7e-15 87.0 277 30.7
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 6.8e-14 83.2 177 33.9
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-13 82.4 146 39.7
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 5.7e-13 80.1 310 24.5
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 1.3e-12 79.0 324 26.2
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.3e-12 79.0 309 25.2
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 2.2e-12 78.2 94 45.7
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 2.2e-12 78.2 143 38.5
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.1e-11 75.9 60 60.0
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 9.2e-11 72.8 115 36.5
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.7e-09 68.6 60 55.0
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.7e-09 68.6 65 50.8
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.3e-09 68.2 81 40.7
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 2.9e-09 67.8 115 38.3
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.6e-09 66.2 226 29.6
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.5e-08 65.5 68 51.5
ATR0782G094 Amborella trichopoda HOM05D003798 ORTHO05D064625 2.5e-08 64.7 33 93.9
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.3e-08 64.3 199 32.2
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 7.3e-08 63.2 129 30.2
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 1.4e-06 58.9 55 49.1
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 4.0e-06 57.4 125 30.4
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 6.8e-06 56.6 127 30.7
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 8.9e-06 56.2 59 45.8


User provided reference genes

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