Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.9e-124 449.1 219 100.0
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 9.6e-84 313.9 226 69.0
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 9.9e-81 303.9 227 68.3
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 2.7e-78 295.8 230 66.5
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 4.6e-78 295.0 220 65.9
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 3.0e-77 292.4 226 63.7
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.9e-77 292.0 227 65.6
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 6.6e-77 291.2 227 65.6
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.1e-76 290.4 226 63.3
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 1.5e-76 290.0 227 65.2
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 5.6e-76 288.1 226 63.7
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 7.4e-76 287.7 223 66.4
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 9.6e-76 287.3 226 61.9
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 3.6e-75 285.4 227 64.3
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 4.8e-75 285.0 220 64.1
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 6.2e-75 284.6 227 67.0
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.1e-74 283.9 221 65.6
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 3.1e-74 282.3 229 63.8
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 5.3e-74 281.6 232 63.8
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 6.9e-74 281.2 227 63.9
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.5e-73 278.5 233 64.4
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 7.6e-73 277.7 220 63.6
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 7.6e-73 277.7 226 62.8
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 7.6e-73 277.7 227 66.1
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.3e-72 276.9 233 62.7
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.3e-72 276.9 233 62.7
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.9e-72 275.8 226 61.1
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.9e-72 275.8 233 62.2
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 3.8e-72 275.4 228 64.9
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.4e-72 274.6 233 62.2
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.4e-71 273.5 233 63.5
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.9e-71 273.1 228 60.1
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.9e-71 273.1 228 60.1
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.4e-71 272.7 233 61.8
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 3.2e-71 272.3 224 63.4
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 4.2e-71 271.9 229 60.3
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 4.2e-71 271.9 229 60.7
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.5e-71 271.6 228 61.0
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.2e-70 270.4 219 63.5
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.7e-70 269.2 226 62.4
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.7e-70 269.2 229 62.0
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 7.9e-70 267.7 221 62.4
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.0e-69 267.3 229 60.3
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 1.0e-69 267.3 228 60.5
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.3e-69 266.9 227 61.2
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 1.8e-69 266.5 221 63.3
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.8e-69 266.5 230 60.4
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 2.3e-69 266.2 229 62.9
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.0e-69 265.8 228 60.1
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 3.0e-69 265.8 228 62.3
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 3.0e-69 265.8 220 62.7
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.0e-69 265.8 168 73.8
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 8.7e-69 264.2 233 60.9
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.1e-68 263.8 232 60.8
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.5e-68 262.7 221 62.0
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 7.4e-68 261.2 229 59.0
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 7.4e-68 261.2 232 60.8
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 7.4e-68 261.2 239 60.3
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.3e-67 260.4 230 61.3
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 4.8e-67 258.5 230 61.7
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 8.1e-67 257.7 221 61.1
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 2.4e-66 256.1 233 60.1
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 3.1e-66 255.8 225 62.2
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 4.0e-66 255.4 229 61.6
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 5.3e-66 255.0 226 61.5
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.0e-65 253.1 244 57.8
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 3.4e-65 252.3 226 61.5
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 5.8e-65 251.5 227 57.7
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 7.6e-65 251.1 226 62.4
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.7e-64 250.0 224 60.7
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.9e-64 249.2 225 56.4
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 3.8e-64 248.8 226 57.5
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.8e-64 248.8 225 56.4
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 3.8e-64 248.8 220 59.5
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 4.9e-64 248.4 220 59.5
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 6.5e-64 248.1 225 56.4
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 7.1e-63 244.6 219 59.4
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 9.3e-63 244.2 221 59.3
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.2e-62 243.8 227 59.0
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.7e-62 242.7 151 78.1
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.3e-61 240.4 222 56.3
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.3e-61 239.6 223 57.4
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 2.3e-61 239.6 224 59.4
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 3.0e-61 239.2 176 68.8
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.0e-61 239.2 218 58.3
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 3.9e-61 238.8 222 56.3
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 6.7e-61 238.0 218 58.3
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 8.7e-61 237.7 222 61.3
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 8.7e-61 237.7 222 61.3
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.1e-60 237.3 230 55.7
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.5e-60 236.9 222 60.8
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 2.5e-60 236.1 218 57.3
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.3e-60 235.7 218 58.3
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 9.6e-60 234.2 226 58.8
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.8e-59 232.6 222 57.2
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 6.3e-59 231.5 218 58.7
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.8e-58 229.9 221 57.5
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 1.8e-58 229.9 220 53.6
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 1.8e-58 229.9 220 53.6
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.8e-58 229.9 228 57.0
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 3.1e-58 229.2 220 53.2
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 6.9e-58 228.0 226 55.8
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 9.0e-58 227.6 220 53.2
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 1.2e-57 227.3 211 56.9
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.5e-57 226.9 214 54.2
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 2.0e-57 226.5 219 54.8
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.0e-57 226.5 226 52.2
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 2.6e-57 226.1 214 51.4
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 2.6e-57 226.1 221 56.6
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 2.6e-57 226.1 222 54.1
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.0e-56 224.2 217 53.9
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-56 223.8 219 51.6
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 1.3e-56 223.8 219 54.3
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.3e-56 223.8 215 54.9
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.7e-56 223.4 219 54.8
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.7e-56 223.4 219 51.6
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.7e-56 223.4 215 54.9
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.2e-56 223.0 226 51.3
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 2.9e-56 222.6 188 62.2
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 6.5e-56 221.5 220 52.7
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 6.5e-56 221.5 210 56.7
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 6.5e-56 221.5 215 54.0
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.1e-55 220.7 213 54.9
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 2.5e-55 219.5 234 50.0
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 7.2e-55 218.0 131 76.3
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 9.3e-55 217.6 227 51.1
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 4.6e-54 215.3 230 49.1
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 3.9e-53 212.2 167 62.3
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 5.1e-53 211.8 190 56.3
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 5.1e-53 211.8 213 50.2
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 8.7e-53 211.1 210 53.3
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 1.9e-52 209.9 181 58.6
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 2.5e-52 209.5 172 58.1
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.5e-52 209.5 174 59.2
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 2.5e-52 209.5 220 53.6
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 2.5e-52 209.5 256 48.8
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.3e-52 208.8 231 50.6
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 5.7e-52 208.4 241 46.5
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 7.4e-52 208.0 230 47.4
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 2.2e-51 206.5 197 54.8
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.8e-51 206.1 213 49.8
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 3.7e-51 205.7 213 50.2
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.3e-50 201.8 213 48.8
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 9.1e-50 201.1 219 51.1
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.5e-49 200.3 186 57.5
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.5e-49 200.3 168 58.9
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 2.6e-49 199.5 222 51.8
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 4.5e-49 198.7 208 51.0
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 5.9e-49 198.4 136 69.1
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 7.7e-49 198.0 215 48.8
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 7.7e-49 198.0 210 50.5
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 7.7e-49 198.0 219 47.9
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 2.2e-48 196.4 215 47.9
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 3.8e-48 195.7 195 53.3
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.9e-47 193.4 213 46.9
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.9e-47 193.4 123 73.2
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.9e-47 193.4 191 53.4
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.5e-47 193.0 228 49.6
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 4.6e-46 188.7 165 57.6
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.1e-44 184.1 127 63.0
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.5e-44 183.7 183 52.5
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 4.4e-44 182.2 164 53.0
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 7.4e-44 181.4 222 50.0
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 2.4e-42 176.4 217 47.0
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 3.1e-42 176.0 108 70.4
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 4.2e-39 165.6 274 40.9
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 7.2e-39 164.9 222 46.8
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 4.7e-38 162.2 157 56.7
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 9.7e-36 154.5 138 57.2
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 8.5e-32 141.4 82 81.7
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.0e-29 134.4 210 39.5
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.0e-29 132.9 88 73.9
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 9.7e-28 127.9 226 37.2
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 9.7e-28 127.9 226 37.2
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 4.8e-27 125.6 220 38.2
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 2.8e-19 99.8 63 73.0
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 7.2e-15 85.1 54 70.4
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 6.8e-13 78.6 52 69.2
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.1e-07 61.2 118 34.7


User provided reference genes

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