Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0332G006 Amborella trichopoda HOM05D002914 ORTHO05D003196 2.6e-48 195.3 114 100.0
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 5.1e-20 101.3 74 63.5
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 6.6e-20 100.9 101 52.5
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.5e-19 99.0 70 65.7
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 3.3e-19 98.6 76 63.2
BcaB02g08314 Brassica carinata HOM05D002914 ORTHO05D003196 4.3e-19 98.2 74 63.5
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 4.3e-19 98.2 84 59.5
BcaC07g40375 Brassica carinata HOM05D002914 ORTHO05D003196 7.3e-19 97.4 74 62.2
Nn2g15303 Nelumbo nucifera HOM05D002914 ORTHO05D003196 7.3e-19 97.4 87 54.0
Ah.04g151670 Amaranthus hybridus HOM05D002914 ORTHO05D003196 9.6e-19 97.1 57 77.2
A09p50360 Brassica napus HOM05D002914 ORTHO05D003196 9.6e-19 97.1 74 62.2
C08p33030 Brassica napus HOM05D002914 ORTHO05D003196 9.6e-19 97.1 74 62.2
BolC8t50903H Brassica oleracea HOM05D002914 ORTHO05D003196 9.6e-19 97.1 74 62.2
BraA09t40488Z Brassica rapa HOM05D002914 ORTHO05D003196 9.6e-19 97.1 74 62.2
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 9.6e-19 97.1 72 62.5
AL5G39080 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 2.1e-18 95.9 62 69.4
Thhalv10006376m.g Eutrema salsugineum HOM05D002914 ORTHO05D003196 2.1e-18 95.9 62 69.4
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 2.1e-18 95.9 61 70.5
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 2.1e-18 95.9 79 59.5
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.1e-18 95.9 58 74.1
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 2.8e-18 95.5 74 60.8
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 2.8e-18 95.5 82 56.1
AT3G57500 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 3.6e-18 95.1 62 67.7
A04p03090 Brassica napus HOM05D002914 ORTHO05D003196 4.8e-18 94.7 74 62.2
BraA04t16032Z Brassica rapa HOM05D002914 ORTHO05D003196 4.8e-18 94.7 74 62.2
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.1e-18 94.0 110 48.2
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 8.1e-18 94.0 110 48.2
BcaC08g44849 Brassica carinata HOM05D002914 ORTHO05D003196 1.1e-17 93.6 57 73.7
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 1.1e-17 93.6 98 56.1
Carub.0005s2434 Capsella rubella HOM05D002914 ORTHO05D003196 1.1e-17 93.6 62 67.7
Ciclev10006230m.g Citrus clementina HOM05D002914 ORTHO05D003196 1.1e-17 93.6 67 64.2
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 1.1e-17 93.6 78 57.7
Manes.09G023600 Manihot esculenta HOM05D002914 ORTHO05D003196 1.1e-17 93.6 77 58.4
EL10Ac3g07073 Beta vulgaris HOM05D002914 ORTHO05D003196 1.4e-17 93.2 57 71.9
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.4e-17 93.2 66 62.1
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 1.4e-17 93.2 58 70.7
Oeu000823.1 Olea europaea HOM05D002914 ORTHO05D003196 1.8e-17 92.8 73 58.9
Aqoxy2G00187 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 2.4e-17 92.4 66 63.6
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.4e-17 92.4 110 47.3
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.1e-17 92.0 59 69.5
Nn7g36239 Nelumbo nucifera HOM05D002914 ORTHO05D003196 3.1e-17 92.0 58 70.7
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 3.1e-17 92.0 60 66.7
Sp5g05100 Schrenkiella parvula HOM05D002914 ORTHO05D003196 4.0e-17 91.7 55 72.7
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 4.0e-17 91.7 63 61.9
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 4.0e-17 91.7 63 61.9
BcaB02g07599 Brassica carinata HOM05D002914 ORTHO05D003196 5.3e-17 91.3 55 72.7
MD14G1070500 Malus domestica HOM05D002914 ORTHO05D003196 5.3e-17 91.3 72 62.5
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 5.3e-17 91.3 74 56.8
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 6.9e-17 90.9 74 55.4
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 9.0e-17 90.5 58 65.5
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 9.0e-17 90.5 72 69.4
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.2e-16 90.1 66 57.6
Cfa016832 Carpinus fangiana HOM05D002914 ORTHO05D003196 1.5e-16 89.7 58 69.0
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 1.5e-16 89.7 74 55.4
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 1.5e-16 89.7 74 55.4
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 2.0e-16 89.4 74 54.1
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 2.6e-16 89.0 74 54.1
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 2.6e-16 89.0 63 60.3
CARHR167710 Cardamine hirsuta HOM05D002914 ORTHO05D003196 7.6e-16 87.4 57 70.2
A07p23450 Brassica napus HOM05D002914 ORTHO05D003196 9.9e-16 87.0 57 70.2
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.3e-15 86.7 74 48.6
Cpa.g.sc92.38 Carica papaya HOM05D002914 ORTHO05D003196 1.3e-15 86.7 87 58.6
Manes.08G049900 Manihot esculenta HOM05D002914 ORTHO05D003196 1.3e-15 86.7 74 55.4
BcaC02g09941 Brassica carinata HOM05D002914 ORTHO05D003196 2.9e-15 85.5 73 58.9
C04p34950 Brassica napus HOM05D002914 ORTHO05D003196 2.9e-15 85.5 73 58.9
BolC4t25049H Brassica oleracea HOM05D002914 ORTHO05D003196 2.9e-15 85.5 73 58.9
QL07p000101 Quercus lobata HOM05D002914 ORTHO05D003196 8.4e-15 84.0 76 59.2
Os03g0696150 Oryza sativa ssp. japonica HOM05D002914 ORTHO05D003196 1.4e-14 83.2 59 61.0
Sc13g0001830 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.4e-14 83.2 97 50.5
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.9e-14 82.8 76 48.7
Lsat_1_v5_gn_9_28661 Lactuca sativa HOM05D002914 ORTHO05D003196 1.9e-14 82.8 103 56.3
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.2e-14 82.0 68 54.4
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 5.4e-14 81.3 72 51.4
Gorai.002G147700 Gossypium raimondii HOM05D002914 ORTHO05D003196 7.1e-14 80.9 68 54.4
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 9.3e-14 80.5 79 46.8
FAN09G0984 Fragaria x ananassa HOM05D002914 ORTHO05D003196 9.3e-14 80.5 72 51.4
Gohir.D01G121050 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.2e-13 80.1 68 54.4
THA.LOC104802149 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 2.7e-13 79.0 78 52.6
Duzib128G0409 Durio zibethinus HOM05D002914 ORTHO05D003196 3.5e-13 78.6 55 61.8
Lj1g0015891 Lotus japonicus HOM05D002914 ORTHO05D003196 4.6e-13 78.2 62 56.5
MBI04_g44434_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 6.0e-13 77.8 48 66.7
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 7.9e-13 77.4 82 42.7
HanXRQChr10g0300121 Helianthus annuus HOM05D002914 ORTHO05D003196 1.0e-12 77.0 75 57.3
MBI02_g05666_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 1.3e-12 76.6 64 54.7
Migut.K00083 Erythranthe guttata HOM05D002914 ORTHO05D003196 3.0e-12 75.5 62 61.3
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 3.9e-12 75.1 74 43.2
DCAR_020485 Daucus carota HOM05D002914 ORTHO05D003196 1.1e-11 73.6 65 50.8
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 1.5e-11 73.2 74 43.2
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 1.9e-11 72.8 75 42.7
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.5e-11 72.4 65 47.7
ECA247G2219 Erigeron canadensis HOM05D000031 ORTHO05D000003 4.3e-11 71.6 62 56.5
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.3e-11 71.6 74 41.9
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 4.3e-11 71.6 74 43.2
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 9.6e-11 70.5 47 57.4
AUR62024432 Chenopodium quinoa HOM05D002914 ORTHO05D003196 1.3e-10 70.1 43 79.1
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.1e-10 69.3 74 40.5
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 3.6e-10 68.6 69 39.1
HPP92_023573 Vanilla planifolia HOM05D002914 ORTHO05D003196 3.6e-10 68.6 62 50.0
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 4.8e-10 68.2 74 40.5
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 4.8e-10 68.2 74 40.5
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 6.2e-10 67.8 63 46.0
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 8.1e-10 67.4 75 37.3
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 8.1e-10 67.4 73 41.1
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 8.1e-10 67.4 74 36.5
Sabra06G0036900 Salix brachista HOM05D002914 ORTHO05D003196 1.1e-09 67.0 59 59.3
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 1.8e-09 66.2 73 38.4
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.8e-09 66.2 62 45.2
ClCG04G003270 Citrullus lanatus HOM05D002914 ORTHO05D003196 2.4e-09 65.9 74 48.6
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 4.0e-09 65.1 87 37.9
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 5.3e-09 64.7 77 33.8
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 5.3e-09 64.7 59 44.1
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 6.9e-09 64.3 76 35.5
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 9.0e-09 63.9 75 45.3
CsaV3_4G011800 Cucumis sativus L. HOM05D002914 ORTHO05D003196 9.0e-09 63.9 77 44.2
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 9.0e-09 63.9 75 45.3
Migut.J01766 Erythranthe guttata HOM05D002914 ORTHO05D003196 9.0e-09 63.9 76 40.8
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 9.0e-09 63.9 73 37.0
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 9.0e-09 63.9 73 37.0
arahy.Tifrunner.gnm1.ann1.TRJ4SS Arachis hypogaea HOM05D002914 ORTHO05D003196 1.2e-08 63.5 40 62.5
Actinidia17240 Actinidia chinensis HOM05D002914 ORTHO05D003196 1.5e-08 63.2 98 36.7
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 1.5e-08 63.2 98 30.6
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.5e-08 63.2 63 39.7
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 2.0e-08 62.8 75 44.0
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 2.6e-08 62.4 63 41.3
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.6e-08 62.4 76 34.2
Zm00001eb216960 Zea mays HOM05D002914 ORTHO05D003196 2.6e-08 62.4 56 51.8
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 3.4e-08 62.0 79 34.2
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 3.4e-08 62.0 70 37.1
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 3.4e-08 62.0 83 33.7
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 3.4e-08 62.0 106 33.0
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 3.4e-08 62.0 75 37.3
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 3.4e-08 62.0 75 36.0
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 4.5e-08 61.6 78 39.7
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 4.5e-08 61.6 63 39.7
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 4.5e-08 61.6 73 32.9
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 5.8e-08 61.2 77 36.4
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.8e-08 61.2 63 46.0
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 5.8e-08 61.2 63 39.7
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 5.8e-08 61.2 88 31.8
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 7.6e-08 60.8 62 46.8
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 7.6e-08 60.8 73 35.6
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 7.6e-08 60.8 66 36.4
MELO3C023115.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.3e-07 60.1 77 42.9
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.3e-07 60.1 59 47.5
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 1.3e-07 60.1 54 42.6
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 1.3e-07 60.1 79 38.0
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.7e-07 59.7 77 36.4
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 1.7e-07 59.7 77 36.4
Atru.ctg24.30 Acer truncatum HOM05D002914 ORTHO05D003196 2.2e-07 59.3 39 61.5
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 2.2e-07 59.3 110 28.2
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 2.2e-07 59.3 75 34.7
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 2.9e-07 58.9 66 34.8
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 2.9e-07 58.9 63 38.1
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 2.9e-07 58.9 74 36.5
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 3.8e-07 58.5 77 35.1
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 4.9e-07 58.2 77 35.1
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 4.9e-07 58.2 57 42.1
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 4.9e-07 58.2 57 42.1
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 4.9e-07 58.2 82 32.9
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 6.4e-07 57.8 59 40.7
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 1.1e-06 57.0 75 38.7
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.4e-06 56.6 86 34.9
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 1.4e-06 56.6 63 34.9
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 1.4e-06 56.6 86 32.6
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 1.9e-06 56.2 57 42.1
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 1.9e-06 56.2 51 43.1
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 1.9e-06 56.2 57 45.6
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 2.4e-06 55.8 57 40.4
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 2.4e-06 55.8 70 40.0
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 3.2e-06 55.5 73 37.0
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 3.2e-06 55.5 74 32.4
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 4.2e-06 55.1 58 43.1
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 4.2e-06 55.1 75 32.0
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.5e-06 54.7 63 41.3
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 7.1e-06 54.3 103 30.1
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 7.1e-06 54.3 80 32.5


User provided reference genes

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