Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0329G065 Amborella trichopoda HOM05D000443 ORTHO05D006935 6.8e-32 140.2 79 100.0
ATR0329G054 Amborella trichopoda HOM05D000443 ORTHO05D006935 3.5e-20 101.3 60 95.0
MD05G1142800 Malus domestica HOM05D000443 ORTHO05D006935 6.0e-20 100.5 60 93.3
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 7.8e-20 100.1 59 94.9
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 7.8e-20 100.1 59 94.9
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 7.8e-20 100.1 59 94.9
Lj9A408T89 Lonicera japonica HOM05D000443 ORTHO05D006935 7.8e-20 100.1 60 93.3
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 7.8e-20 100.1 59 94.9
RcHm_v2.0_Chr6g0281161 Rosa chinensis HOM05D000443 ORTHO05D006935 7.8e-20 100.1 59 94.9
Migut.G00034 Erythranthe guttata HOM05D000443 ORTHO05D006935 1.0e-19 99.8 63 87.3
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 1.0e-19 99.8 59 93.2
QL11p056627 Quercus lobata HOM05D000443 ORTHO05D006935 1.0e-19 99.8 65 87.7
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 1.7e-19 99.0 59 93.2
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
ClCG02G003280 Citrullus lanatus HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
CsaV3_7G002090 Cucumis sativus L. HOM05D000037 ORTHO05D000150 2.3e-19 98.6 59 93.2
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
Manes.03G097000 Manihot esculenta HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 2.3e-19 98.6 59 93.2
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 2.3e-19 98.6 59 93.2
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 3.0e-19 98.2 62 88.7
FvH4_2g16970 Fragaria vesca HOM05D000443 ORTHO05D006935 3.0e-19 98.2 58 94.8
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 3.9e-19 97.8 59 93.2
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 3.9e-19 97.8 59 91.5
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 3.9e-19 97.8 59 91.5
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 3.9e-19 97.8 59 93.2
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 5.1e-19 97.4 59 91.5
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 5.1e-19 97.4 59 91.5
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 5.1e-19 97.4 59 91.5
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 5.1e-19 97.4 59 91.5
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 5.1e-19 97.4 59 91.5
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 6.6e-19 97.1 59 91.5
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 6.6e-19 97.1 59 91.5
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 6.6e-19 97.1 59 91.5
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 6.6e-19 97.1 59 91.5
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 8.7e-19 96.7 57 94.7
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 8.7e-19 96.7 58 93.1
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 8.7e-19 96.7 58 93.1
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 8.7e-19 96.7 58 93.1
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 8.7e-19 96.7 58 93.1
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 8.7e-19 96.7 58 93.1
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 8.7e-19 96.7 59 91.5
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 8.7e-19 96.7 58 93.1
Ca_14680_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 8.7e-19 96.7 60 88.3
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 8.7e-19 96.7 58 93.1
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 8.7e-19 96.7 60 88.3
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 8.7e-19 96.7 60 88.3
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 1.1e-18 96.3 60 88.3
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 1.1e-18 96.3 60 88.3
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 1.1e-18 96.3 60 88.3
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 1.1e-18 96.3 60 88.3
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 1.5e-18 95.9 60 90.0
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 1.5e-18 95.9 58 91.4
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 1.5e-18 95.9 59 89.8
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 1.5e-18 95.9 59 89.8
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 1.5e-18 95.9 59 88.1
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 1.9e-18 95.5 57 93.0
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 1.9e-18 95.5 57 93.0
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 1.9e-18 95.5 58 91.4
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 1.9e-18 95.5 58 91.4
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 1.9e-18 95.5 58 91.4
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 2.5e-18 95.1 59 89.8
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 2.5e-18 95.1 58 91.4
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 2.5e-18 95.1 58 91.4
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 2.5e-18 95.1 57 93.0
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 3.3e-18 94.7 59 86.4
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 4.3e-18 94.4 58 91.4
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 4.3e-18 94.4 58 91.4
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 4.3e-18 94.4 58 91.4
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
Psat4g126920 Pisum sativum HOM05D000443 ORTHO05D006935 4.3e-18 94.4 60 85.0
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 4.3e-18 94.4 57 91.2
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 4.3e-18 94.4 58 89.7
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 5.6e-18 94.0 58 89.7
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 5.6e-18 94.0 58 89.7
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 7.3e-18 93.6 63 82.5
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 7.3e-18 93.6 60 85.0
THA.LOC104804551 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 7.3e-18 93.6 60 85.0
HPP92_018958 Vanilla planifolia HOM05D000443 ORTHO05D006935 7.3e-18 93.6 59 88.1
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 1.3e-17 92.8 60 86.7
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 1.3e-17 92.8 60 86.7
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 1.3e-17 92.8 69 73.9
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 1.3e-17 92.8 60 85.0
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 1.3e-17 92.8 57 89.5
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 1.6e-17 92.4 57 89.5
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 2.1e-17 92.0 58 87.9
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 2.8e-17 91.7 60 85.0
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 2.8e-17 91.7 57 89.5
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 3.6e-17 91.3 56 89.3
Lalb_Chr05g0227911 Lupinus albus HOM05D000443 ORTHO05D006935 3.6e-17 91.3 56 91.1
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 3.6e-17 91.3 56 89.3
Ca_13829_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 1.4e-16 89.4 60 83.3
TPR.G26885 Trifolium pratense HOM05D000443 ORTHO05D006935 1.9e-13 79.0 60 78.3
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 2.1e-12 75.5 54 75.9
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 7.9e-12 73.6 47 87.2
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 5.1e-11 70.9 51 74.5
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 5.1e-11 70.9 51 74.5
Zm00001eb288990 Zea mays HOM05D000443 ORTHO05D006935 2.1e-09 65.5 44 81.8
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 3.7e-09 64.7 47 72.3
Phvul.010G144400 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 3.7e-09 64.7 47 76.6
ClCG02G010820 Citrullus lanatus HOM05D000443 ORTHO05D006935 3.4e-07 58.2 60 58.3
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 3.4e-07 58.2 40 75.0
GSVIVG01011124001 Vitis vinifera HOM05D000443 ORTHO05D006935 3.4e-07 58.2 31 100.0


User provided reference genes

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