Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 6.9e-251 870.2 435 100.0
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 2.5e-184 649.0 432 73.6
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 9.8e-181 637.1 428 73.4
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 4.9e-180 634.8 431 73.1
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 1.1e-179 633.6 435 72.0
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 1.1e-179 633.6 438 72.1
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 9.2e-179 630.6 362 82.0
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 9.2e-179 630.6 435 71.3
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 3.5e-178 628.6 386 78.2
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 1.0e-177 627.1 426 73.7
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 3.0e-177 625.5 433 73.4
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 3.0e-177 625.5 364 81.9
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 5.0e-177 624.8 437 71.6
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 6.6e-177 624.4 425 72.9
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 1.1e-176 623.6 425 72.5
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 3.3e-176 622.1 421 72.7
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 4.3e-176 621.7 433 70.7
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 9.5e-176 620.5 430 71.9
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 1.2e-175 620.2 437 72.5
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 2.1e-175 619.4 438 71.0
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 2.8e-175 619.0 442 70.8
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 2.8e-175 619.0 442 70.8
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 4.7e-175 618.2 431 72.2
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 4.7e-175 618.2 395 75.9
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 6.2e-175 617.8 434 72.1
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 8.0e-175 617.5 431 71.5
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 1.1e-174 617.1 438 71.5
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 1.4e-174 616.7 431 70.3
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 5.2e-174 614.8 394 73.9
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 5.2e-174 614.8 437 70.5
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 5.2e-174 614.8 435 71.7
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 6.8e-174 614.4 389 75.3
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 8.9e-174 614.0 398 73.9
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 8.9e-174 614.0 391 76.5
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 8.9e-174 614.0 398 74.1
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 8.9e-174 614.0 432 72.5
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 8.9e-174 614.0 391 75.7
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 8.9e-174 614.0 431 71.9
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 1.2e-173 613.6 430 71.2
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 1.5e-173 613.2 432 70.8
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 1.5e-173 613.2 432 70.6
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 1.5e-173 613.2 429 71.6
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 2.0e-173 612.8 394 74.1
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 2.6e-173 612.5 389 75.3
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 2.6e-173 612.5 439 70.4
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 3.4e-173 612.1 437 70.0
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 4.4e-173 611.7 433 70.4
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 4.4e-173 611.7 436 70.0
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 4.4e-173 611.7 398 74.9
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 5.8e-173 611.3 431 69.8
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 9.8e-173 610.5 389 75.6
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 1.3e-172 610.1 389 74.6
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.3e-172 610.1 358 80.4
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 2.2e-172 609.4 394 74.6
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 2.2e-172 609.4 389 74.6
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 2.2e-172 609.4 397 75.1
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 3.7e-172 608.6 431 70.1
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 3.7e-172 608.6 436 69.7
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 3.7e-172 608.6 429 69.5
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 6.4e-172 607.8 372 78.5
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 8.3e-172 607.4 429 69.5
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 8.3e-172 607.4 389 74.3
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 8.3e-172 607.4 400 73.5
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 1.1e-171 607.1 389 75.8
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 1.1e-171 607.1 390 75.4
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 1.1e-171 607.1 430 70.7
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 1.4e-171 606.7 389 74.0
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 1.4e-171 606.7 400 73.5
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 1.4e-171 606.7 389 74.0
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 1.4e-171 606.7 427 70.7
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 1.4e-171 606.7 435 69.2
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 1.9e-171 606.3 389 75.1
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 1.9e-171 606.3 390 75.6
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 1.9e-171 606.3 430 69.3
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 2.4e-171 605.9 429 69.5
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 3.2e-171 605.5 389 75.1
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 5.4e-171 604.7 389 75.1
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 5.4e-171 604.7 430 69.1
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 7.0e-171 604.4 435 70.8
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 7.0e-171 604.4 430 70.0
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 9.2e-171 604.0 429 70.6
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 9.2e-171 604.0 422 71.1
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 1.2e-170 603.6 430 70.0
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 1.6e-170 603.2 436 70.0
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 2.1e-170 602.8 424 70.8
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 2.1e-170 602.8 424 70.8
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 2.7e-170 602.4 427 68.6
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 2.7e-170 602.4 389 74.8
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 3.5e-170 602.1 392 75.0
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 4.6e-170 601.7 390 74.6
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 7.8e-170 600.9 436 70.0
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 7.8e-170 600.9 392 75.5
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 1.0e-169 600.5 394 73.6
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 1.0e-169 600.5 393 73.0
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 2.3e-169 599.4 389 74.3
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 2.3e-169 599.4 433 69.1
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 3.9e-169 598.6 361 78.7
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 5.1e-169 598.2 427 68.9
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 6.6e-169 597.8 393 73.3
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 8.6e-169 597.4 362 77.3
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 8.6e-169 597.4 389 74.0
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 3.3e-168 595.5 430 69.8
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 4.3e-168 595.1 394 74.1
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 1.6e-167 593.2 389 72.5
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 2.8e-167 592.4 364 77.7
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 6.2e-167 591.3 392 72.2
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 1.8e-166 589.7 408 72.8
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 3.1e-166 589.0 432 66.9
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 1.5e-165 586.6 431 66.6
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 3.4e-165 585.5 390 75.1
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 1.1e-163 580.5 430 67.7
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 1.4e-163 580.1 408 70.3
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 3.2e-163 578.9 416 70.2
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 3.2e-163 578.9 416 70.2
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.7e-161 573.2 388 71.9
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 1.7e-161 573.2 395 71.1
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 1.7e-161 573.2 385 71.2
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 2.3e-161 572.8 430 65.8
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 1.1e-158 563.9 384 72.9
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 3.1e-158 562.4 401 68.1
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 5.2e-158 561.6 329 81.2
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 1.2e-157 560.5 416 67.3
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 1.5e-157 560.1 330 80.3
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 7.6e-157 557.8 332 79.8
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 9.9e-157 557.4 375 71.2
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 2.9e-156 555.8 330 79.1
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 3.2e-155 552.4 375 70.7
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 5.4e-155 551.6 400 68.0
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 4.3e-152 542.0 432 63.4
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 4.8e-151 538.5 430 65.8
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 8.1e-151 537.7 332 77.7
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 1.5e-133 480.3 361 62.9
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 1.9e-131 473.4 432 59.3
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 1.6e-130 470.3 386 60.4
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.4e-123 447.2 312 71.5
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 5.5e-123 445.3 428 57.7
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 3.7e-119 432.6 360 58.3
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 1.0e-116 424.5 434 54.6
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 3.9e-113 412.5 392 57.1
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 8.2e-103 378.3 432 50.9
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 4.1e-94 349.4 362 50.0
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 7.5e-80 302.0 176 79.0
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 1.7e-79 300.8 256 63.7
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 1.8e-78 297.4 176 77.3
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 2.4e-78 297.0 252 62.3
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 2.1e-74 283.9 178 77.5
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 7.0e-70 268.9 264 57.2
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 3.5e-69 266.5 153 81.7
A06p33750 Brassica napus HOM05D003687 ORTHO05D004571 2.4e-62 243.8 232 56.5
ATR0749G088 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.3e-60 237.3 160 80.0
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 3.9e-60 236.5 189 69.3
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 6.6e-60 235.7 367 36.8
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.5e-59 233.8 254 51.2
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 1.4e-57 228.0 323 39.3
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 2.2e-55 220.7 433 32.3
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 7.1e-54 215.7 188 59.6
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 8.9e-49 198.7 175 60.0
ATR0763G123 Amborella trichopoda HOM05D003687 ORTHO05D004571 2.9e-47 193.7 102 93.1
ATR0199G031 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.2e-45 188.3 125 81.6
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 1.2e-45 188.3 157 62.4
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 2.1e-45 187.6 163 62.0
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 4.6e-45 186.4 157 61.8
RcHm_v2.0_Chr2g0097551 Rosa chinensis HOM05D003687 ORTHO05D004571 3.0e-44 183.7 150 62.0
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 3.9e-44 183.3 157 61.8
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 3.6e-42 176.8 152 61.2
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 6.8e-41 172.6 108 73.1
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.2e-39 167.5 305 38.4
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 1.9e-38 164.5 147 59.9
RcHm_v2.0_Chr2g0097541 Rosa chinensis HOM05D003687 ORTHO05D004571 1.6e-29 134.8 147 57.8
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 1.9e-27 127.9 83 71.1
SalBow6G6204 Salvia bowleyana HOM05D003687 ORTHO05D004571 9.6e-27 125.6 78 73.1
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 1.3e-26 125.2 293 31.7
ATR0208G001 Amborella trichopoda HOM05D003687 ORTHO05D067511 2.4e-22 110.9 65 86.2
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 2.8e-18 97.4 63 76.2
SalBow6G6332 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.8e-18 97.4 133 43.6
SalBow7G4144 Salvia bowleyana HOM05D003687 ORTHO05D004571 6.2e-18 96.3 54 79.6
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.4e-17 95.1 56 83.9
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 1.8e-17 94.7 69 73.9
SalBow6G4873 Salvia bowleyana HOM05D003687 ORTHO05D004571 9.3e-14 82.4 84 50.0
Psat6g182000 Pisum sativum HOM05D002062 ORTHO05D002242 3.1e-09 67.4 50 62.0
Sopen04g021110 Solanum pennellii HOM05D001565 ORTHO05D018129 5.9e-08 63.2 40 77.5
Solyc04g150135.1 Solanum lycopersicum HOM05D001565 ORTHO05D001725 1.0e-07 62.4 57 56.1
Psat3g043760 Pisum sativum HOM05D003687 ORTHO05D018418 1.3e-07 62.0 37 73.0
Solyc04g050430.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 1.7e-07 61.6 41 73.2
Solyc04g050403.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 1.4e-06 58.5 40 75.0
SalBow6G6873 Salvia bowleyana HOM05D000052 ORTHO05D000046 4.2e-06 57.0 108 32.4
TAR371G0743 Trochodendron aralioides HOM05D003687 ORTHO05D006936 5.5e-06 56.6 72 44.4


User provided reference genes

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