Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 3.9e-57 224.6 113 100.0
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 2.1e-34 149.1 77 93.5
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 2.4e-30 135.6 78 79.5
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 4.1e-30 134.8 78 82.1
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 9.2e-30 133.7 78 82.1
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.2e-29 133.3 78 79.5
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.7e-29 132.1 78 80.8
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 2.7e-29 132.1 77 80.5
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 2.7e-29 132.1 78 78.2
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 2.7e-29 132.1 78 78.2
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 3.5e-29 131.7 78 82.1
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 3.5e-29 131.7 77 83.1
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 3.5e-29 131.7 77 83.1
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 5.9e-29 131.0 77 80.5
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 5.9e-29 131.0 78 78.2
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 7.8e-29 130.6 78 76.9
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 7.8e-29 130.6 78 78.2
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 1.0e-28 130.2 77 79.2
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 1.0e-28 130.2 77 80.5
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 1.3e-28 129.8 78 79.5
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 1.3e-28 129.8 78 74.4
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.3e-28 129.8 78 79.5
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.7e-28 129.4 78 79.5
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 1.7e-28 129.4 78 76.9
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 1.7e-28 129.4 77 79.2
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 2.3e-28 129.0 77 80.5
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 2.3e-28 129.0 76 82.9
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 2.3e-28 129.0 76 82.9
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.3e-28 129.0 76 82.9
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 2.3e-28 129.0 78 76.9
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 2.3e-28 129.0 76 82.9
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.9e-28 128.6 77 77.9
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.9e-28 128.6 78 75.6
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 2.9e-28 128.6 77 77.9
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 2.9e-28 128.6 77 81.8
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 3.8e-28 128.3 77 79.2
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 3.8e-28 128.3 77 79.2
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 3.8e-28 128.3 78 79.5
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 5.0e-28 127.9 78 78.2
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 5.0e-28 127.9 77 77.9
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 5.0e-28 127.9 75 80.0
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 6.6e-28 127.5 78 76.9
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 6.6e-28 127.5 77 76.6
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 6.6e-28 127.5 77 77.9
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 6.6e-28 127.5 78 76.9
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 6.6e-28 127.5 76 77.6
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 6.6e-28 127.5 77 79.2
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 8.6e-28 127.1 75 80.0
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 1.1e-27 126.7 77 76.6
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.5e-27 126.3 77 79.2
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.5e-27 126.3 78 75.6
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 1.5e-27 126.3 78 75.6
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 1.5e-27 126.3 78 76.9
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 1.9e-27 125.9 77 77.9
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 1.9e-27 125.9 78 75.6
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 1.9e-27 125.9 78 75.6
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 1.9e-27 125.9 78 75.6
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 2.5e-27 125.6 77 77.9
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 2.5e-27 125.6 77 76.6
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 2.5e-27 125.6 76 78.9
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 2.5e-27 125.6 76 78.9
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 2.5e-27 125.6 78 74.4
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 3.3e-27 125.2 77 77.9
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 3.3e-27 125.2 77 77.9
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 3.3e-27 125.2 77 77.9
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 3.3e-27 125.2 77 77.9
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 3.3e-27 125.2 77 77.9
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 3.3e-27 125.2 77 74.0
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 3.3e-27 125.2 77 74.0
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 3.3e-27 125.2 77 77.9
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 3.3e-27 125.2 76 77.6
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 3.3e-27 125.2 77 77.9
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 3.3e-27 125.2 78 71.8
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 4.3e-27 124.8 77 76.6
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 5.6e-27 124.4 77 77.9
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 5.6e-27 124.4 77 77.9
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 5.6e-27 124.4 77 77.9
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 5.6e-27 124.4 77 76.6
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 7.3e-27 124.0 77 72.7
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 7.3e-27 124.0 78 74.4
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 7.3e-27 124.0 76 77.6
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 9.5e-27 123.6 77 76.6
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 9.5e-27 123.6 77 76.6
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 9.5e-27 123.6 76 78.9
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 9.5e-27 123.6 77 76.6
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 9.5e-27 123.6 78 73.1
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 1.2e-26 123.2 78 71.8
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.2e-26 123.2 77 75.3
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.2e-26 123.2 76 78.9
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 1.2e-26 123.2 77 72.7
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 2.1e-26 122.5 77 72.7
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 2.8e-26 122.1 77 76.6
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 2.8e-26 122.1 76 77.6
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.8e-26 122.1 77 74.0
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 4.7e-26 121.3 76 75.0
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 8.0e-26 120.6 77 74.0
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 1.0e-25 120.2 76 76.3
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 1.0e-25 120.2 77 74.0
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.4e-25 119.8 77 72.7
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.4e-25 119.8 77 76.6
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.8e-25 119.4 74 75.7
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 3.0e-25 118.6 74 74.3
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 5.2e-25 117.9 77 70.1
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 5.2e-25 117.9 77 71.4
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 5.2e-25 117.9 77 71.4
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 5.2e-25 117.9 77 71.4
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 5.2e-25 117.9 77 71.4
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 5.2e-25 117.9 77 71.4
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 6.8e-25 117.5 77 70.1
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 8.9e-25 117.1 76 73.7
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 1.2e-24 116.7 77 70.1
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 2.0e-24 115.9 76 73.7
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 3.4e-24 115.2 76 73.7
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 4.4e-24 114.8 76 72.4
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 7.5e-24 114.0 112 55.4
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.5e-24 114.0 77 75.3
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.3e-23 113.2 76 71.1
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.1e-22 110.2 76 68.4
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 1.6e-21 106.3 121 49.6
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 7.8e-21 104.0 82 62.2
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 1.3e-20 103.2 65 70.8
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.7e-20 102.8 76 65.8
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 2.3e-20 102.4 65 73.8
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 3.6e-18 95.1 68 70.6
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.1e-17 93.6 64 70.3
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.3e-15 86.7 52 73.1
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 2.2e-15 85.9 53 77.4
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.7e-15 85.1 79 51.9
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 3.2e-14 82.0 51 76.5
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.7e-13 79.0 52 67.3
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.5e-11 72.4 66 47.0
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 3.1e-09 65.5 80 46.2
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 8.9e-09 63.9 41 73.2
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.5e-08 63.2 37 78.4
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.9e-07 58.9 53 56.6
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 4.9e-07 58.2 70 41.4
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 2.4e-06 55.8 70 40.0


User provided reference genes

Program Settings