Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 6.8e-93 344.0 173 100.0
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.0e-48 195.7 172 60.5
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 6.3e-46 188.0 172 56.4
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 8.2e-46 187.6 171 58.5
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 3.4e-44 182.2 172 54.7
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.1e-41 172.9 170 53.5
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.1e-41 172.9 172 56.4
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.8e-40 169.9 172 52.9
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 2.8e-38 162.5 172 49.4
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.7e-38 162.2 172 47.7
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 4.8e-38 161.8 172 49.4
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-37 160.2 172 50.0
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.8e-37 159.8 176 48.9
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.1e-37 158.7 171 46.8
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.1e-37 158.7 172 49.4
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 6.9e-37 157.9 174 49.4
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 5.9e-36 154.8 174 47.1
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 5.9e-36 154.8 174 46.6
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.7e-35 153.3 171 49.7
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.7e-35 153.3 172 46.5
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 3.8e-35 152.1 176 47.7
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 6.5e-35 151.4 171 48.0
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 1.1e-34 150.6 171 49.1
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 1.4e-34 150.2 176 47.2
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.5e-34 149.4 171 48.0
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 3.2e-34 149.1 170 46.5
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.2e-34 149.1 171 48.0
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 5.5e-34 148.3 171 43.3
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 7.2e-34 147.9 173 46.8
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 9.4e-34 147.5 173 48.0
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 2.7e-33 146.0 173 43.9
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.6e-33 145.6 173 42.8
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 4.7e-33 145.2 172 44.2
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 7.9e-33 144.4 167 46.7
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 1.4e-32 143.7 173 45.7
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.8e-32 143.3 174 46.0
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 2.3e-32 142.9 171 43.3
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.3e-32 142.9 173 43.4
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 3.0e-32 142.5 171 46.2
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 5.1e-32 141.7 170 45.9
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 5.1e-32 141.7 172 44.2
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 5.1e-32 141.7 173 41.6
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 6.7e-32 141.4 171 44.4
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 8.8e-32 141.0 171 43.9
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 8.8e-32 141.0 172 45.9
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 1.1e-31 140.6 171 41.5
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 1.5e-31 140.2 174 43.7
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 2.0e-31 139.8 170 45.3
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.0e-31 139.8 173 41.0
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 2.0e-31 139.8 172 46.5
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 4.4e-31 138.7 171 42.1
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.7e-31 138.3 173 42.8
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 5.7e-31 138.3 173 47.4
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 5.7e-31 138.3 172 45.9
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 5.7e-31 138.3 166 47.6
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 7.4e-31 137.9 175 42.9
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 7.4e-31 137.9 174 42.0
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 9.7e-31 137.5 173 41.6
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 9.7e-31 137.5 172 43.0
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 1.7e-30 136.7 173 46.8
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 2.2e-30 136.3 172 41.9
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 3.7e-30 135.6 172 44.8
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 4.8e-30 135.2 173 40.5
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 6.3e-30 134.8 171 42.1
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 6.3e-30 134.8 171 39.8
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 6.3e-30 134.8 172 41.3
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 8.2e-30 134.4 173 45.1
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.1e-29 134.0 173 45.1
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 1.1e-29 134.0 173 42.8
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 4.1e-29 132.1 174 42.5
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 5.3e-29 131.7 171 41.5
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 5.3e-29 131.7 173 44.5
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 7.0e-29 131.3 171 39.8
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 7.0e-29 131.3 174 41.4
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 7.0e-29 131.3 176 42.0
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 9.1e-29 131.0 172 41.9
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.5e-28 130.2 172 41.3
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 1.5e-28 130.2 171 39.8
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 1.5e-28 130.2 171 43.9
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.5e-28 130.2 172 41.9
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 2.0e-28 129.8 171 44.4
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 2.0e-28 129.8 172 42.4
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 2.0e-28 129.8 172 43.0
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 4.5e-28 128.6 171 39.8
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 5.9e-28 128.3 171 38.0
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 1.0e-27 127.5 173 43.4
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 1.0e-27 127.5 171 40.4
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.3e-27 127.1 178 42.1
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 1.7e-27 126.7 172 43.0
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.7e-27 126.7 172 43.6
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.7e-27 126.7 173 40.5
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.2e-27 126.3 172 40.1
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 3.8e-27 125.6 172 41.3
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 5.0e-27 125.2 174 44.3
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 5.0e-27 125.2 172 41.9
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 6.5e-27 124.8 175 41.7
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 8.5e-27 124.4 173 37.0
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 8.5e-27 124.4 174 38.5
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 8.5e-27 124.4 162 45.7
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.1e-26 124.0 170 40.6
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.1e-26 124.0 170 40.6
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 1.1e-26 124.0 161 39.1
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.1e-26 124.0 163 39.3
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.5e-26 122.9 173 39.3
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.2e-26 122.5 171 38.0
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.2e-26 122.1 171 40.4
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 4.2e-26 122.1 173 40.5
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 5.5e-26 121.7 173 37.6
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 7.2e-26 121.3 172 36.0
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 7.2e-26 121.3 173 37.6
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 9.4e-26 120.9 172 39.5
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.2e-25 120.6 171 39.8
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.2e-25 120.6 174 39.7
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.6e-25 120.2 172 39.0
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.6e-25 120.2 173 39.3
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 1.6e-25 120.2 163 38.7
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 2.1e-25 119.8 172 36.0
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 2.1e-25 119.8 172 36.0
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.1e-25 119.8 172 38.4
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 2.7e-25 119.4 172 38.4
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 4.7e-25 118.6 172 38.4
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 4.7e-25 118.6 169 42.0
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 6.1e-25 118.2 172 39.0
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 6.1e-25 118.2 180 37.2
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 3.0e-24 115.9 139 45.3
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 4.0e-24 115.5 173 39.3
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 8.8e-24 114.4 136 45.6
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 2.0e-23 113.2 174 36.8
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 3.3e-23 112.5 140 42.9
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 4.4e-23 112.1 182 36.8
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 5.7e-23 111.7 131 43.5
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 7.5e-23 111.3 174 36.2
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 7.5e-23 111.3 166 36.7
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.7e-22 110.2 173 37.6
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 1.4e-21 107.1 168 36.3
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 4.1e-21 105.5 153 38.6
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 5.3e-21 105.1 165 40.0
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.2e-20 104.0 171 36.3
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 2.0e-20 103.2 159 37.1
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 5.5e-18 95.1 158 34.8
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 7.2e-18 94.7 158 34.2
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 7.2e-18 94.7 158 34.8
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 7.2e-18 94.7 158 34.2
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 7.2e-18 94.7 172 33.1
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.6e-17 93.6 175 33.7
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 2.1e-17 93.2 171 30.4
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 3.6e-17 92.4 152 34.9
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.3e-16 89.7 175 30.3
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 2.4e-13 79.7 85 48.2
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 7.7e-12 74.7 167 24.6
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 9.4e-10 67.8 95 38.9
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-08 63.9 89 41.6
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 5.2e-08 62.0 88 39.8
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 6.8e-08 61.6 112 33.0
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 7.5e-07 58.2 90 36.7


User provided reference genes

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