Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 0.0e+00 3220.6 1638 100.0
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 0.0e+00 1319.3 1650 46.2
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 0.0e+00 1271.1 1696 44.5
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 0.0e+00 1265.4 1659 44.4
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1227.2 1646 43.9
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1225.7 1667 43.5
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 0.0e+00 1220.3 1676 43.3
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 0.0e+00 1209.1 1667 42.7
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 0.0e+00 1208.7 1727 42.1
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 0.0e+00 1200.3 1685 42.0
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 0.0e+00 1194.9 1655 43.6
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 0.0e+00 1192.9 1681 42.8
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 0.0e+00 1192.2 1648 42.4
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 0.0e+00 1191.4 1663 42.9
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 0.0e+00 1186.4 1654 43.2
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 0.0e+00 1181.0 1718 41.2
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1180.2 1653 43.3
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 0.0e+00 1179.9 1668 41.8
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 0.0e+00 1178.7 1685 42.1
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1164.1 1668 41.7
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 0.0e+00 1161.0 1671 41.8
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 0.0e+00 1158.7 1253 47.8
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 0.0e+00 1122.8 1684 40.4
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1120.9 1513 44.1
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 0.0e+00 1114.0 1647 41.2
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1112.8 1674 40.9
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1112.4 1675 40.9
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 0.0e+00 1111.3 1680 40.7
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 0.0e+00 1111.3 1660 41.9
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 0.0e+00 1107.0 1668 41.4
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1102.4 1642 41.4
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 0.0e+00 1099.3 1711 40.3
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 0.0e+00 1097.8 1639 40.8
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 0.0e+00 1093.6 1665 40.1
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 0.0e+00 1092.0 1637 41.3
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 0.0e+00 1092.0 1646 40.7
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 0.0e+00 1090.9 1644 40.0
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 0.0e+00 1090.5 1672 40.1
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1090.5 1641 41.4
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1088.6 1638 40.8
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 0.0e+00 1088.2 1676 40.1
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1086.2 1634 40.8
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1085.5 1637 41.2
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1082.8 1665 39.8
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1082.0 1638 41.0
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 0.0e+00 1082.0 1633 40.4
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 0.0e+00 1082.0 1649 40.6
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 0.0e+00 1082.0 1624 40.8
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 0.0e+00 1081.2 1652 40.6
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 0.0e+00 1080.9 1642 40.7
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 0.0e+00 1079.3 1680 39.5
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 0.0e+00 1076.6 1706 40.0
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 1.1e-311 1074.3 1652 39.6
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 3.4e-311 1072.4 1677 40.5
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 5.6e-311 1071.6 1647 40.4
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 1.0e-310 1070.8 1620 40.6
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 1.9e-309 1066.6 1637 40.9
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 4.2e-309 1065.4 1667 40.1
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 5.5e-309 1065.1 1663 41.0
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 1.8e-307 1060.1 1269 46.0
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 3.7e-305 1052.4 1656 39.4
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 8.5e-302 1041.2 1704 39.1
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 8.5e-302 1041.2 1667 39.3
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 5.5e-301 1038.5 1604 39.9
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 1.4e-299 1033.9 1850 36.3
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 2.3e-299 1033.1 1746 38.4
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 1.5e-298 1030.4 1618 40.5
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 1.7e-297 1026.9 1674 38.8
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 2.6e-295 1019.6 1449 42.4
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 2.9e-294 1016.1 1627 39.5
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 3.8e-294 1015.8 1411 42.0
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 6.1e-292 1008.4 1639 38.8
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 1.8e-291 1006.9 1647 38.9
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 4.8e-289 998.8 1644 38.7
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 9.1e-288 994.6 1426 41.7
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 2.2e-286 989.9 1663 38.2
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 3.2e-285 986.1 1662 38.3
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 1.6e-284 983.8 1628 38.4
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 1.0e-283 981.1 1641 38.5
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 3.0e-283 979.5 1651 38.4
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 1.4e-280 970.7 1643 37.7
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 1.0e-270 937.9 1527 38.4
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 6.8e-267 925.2 1517 38.3
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 3.4e-266 922.9 1375 40.7
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 4.4e-266 922.5 1650 37.9
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 1.4e-264 917.5 1373 41.0
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 2.4e-264 916.8 1364 40.5
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 3.5e-263 912.9 1646 36.6
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 2.3e-259 900.2 1365 40.2
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 6.0e-255 885.6 1541 37.1
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 4.0e-251 872.8 1098 43.4
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 9.2e-240 835.1 1663 34.6
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 9.9e-234 815.1 1045 44.3
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 1.4e-227 794.7 1658 34.2
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 1.4e-216 758.1 1645 33.3
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 2.5e-205 720.7 974 40.6
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 9.0e-203 712.2 1666 33.3
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 1.8e-190 671.4 1743 31.6
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 6.7e-182 642.9 1598 31.9
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 9.8e-165 585.9 1057 37.1
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 2.9e-161 574.3 782 43.2
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 2.1e-159 568.2 898 38.0
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 1.8e-155 555.1 815 40.0
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 2.4e-147 528.1 1265 29.4
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 1.7e-140 505.4 818 39.0
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 4.6e-138 497.3 829 38.2
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 1.1e-131 476.1 1307 30.5
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 1.6e-127 462.2 581 44.6
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 7.6e-117 426.8 720 40.7
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 6.4e-116 423.7 718 38.2
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 9.0e-102 376.7 495 44.0
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.2e-93 349.7 209 85.6
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 3.8e-92 344.7 548 36.3
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 1.9e-88 332.4 394 46.4
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 2.1e-82 312.4 571 36.6
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.6e-82 311.2 189 84.7
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.4e-81 309.7 184 85.3
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.0e-80 305.8 184 84.8
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 7.4e-80 303.9 189 82.5
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 2.0e-77 295.8 299 52.5
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.2e-76 292.4 681 34.1
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.5e-68 264.2 168 82.7
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.2e-67 261.9 148 88.5
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 8.2e-63 247.3 408 39.0
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.8e-57 229.6 138 86.2
ATR1016G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.0e-57 228.4 135 84.4
ATR0049G066 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.5e-56 226.5 135 83.7
ATR0342G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 5.7e-56 224.6 135 83.7
ATR1002G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.3e-55 221.1 135 83.0
ATR0882G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 8.3e-55 220.7 135 82.2
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 1.2e-53 216.9 934 25.4
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 4.2e-51 208.4 193 52.3
ATR0626G235 Amborella trichopoda HOM05D004423 ORTHO05D005464 8.8e-49 200.7 122 83.6
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 9.8e-48 197.2 537 31.3
ATR0733G014 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.6e-42 178.7 104 86.5
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 5.2e-41 174.9 158 52.5
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 7.3e-35 154.5 456 33.3
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 2.9e-31 142.5 130 50.8
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 4.7e-26 125.2 129 47.3
Nitab4.5_0003603g0110 Nicotiana tabacum HOM05D004423 ORTHO05D005464 4.0e-25 122.1 130 50.0
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 2.0e-24 119.8 96 63.5
Atru.chr5.3470 Acer truncatum HOM05D004423 ORTHO05D005464 2.6e-24 119.4 130 49.2
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 6.4e-23 114.8 272 30.5
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 1.9e-19 103.2 352 30.4
Dinv41902 Davidia involucrata HOM05D004423 ORTHO05D005464 1.2e-18 100.5 327 32.7
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 4.0e-17 95.5 162 33.3
Medtr1g031850 Medicago truncatula HOM05D004423 ORTHO05D005464 4.1e-14 85.5 71 60.6
Hma1.2p1_0032F.1_g019010 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 1.6e-13 83.6 129 38.0
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 7.8e-13 81.3 106 42.5
Medtr2g060580 Medicago truncatula HOM05D004423 ORTHO05D005464 3.0e-12 79.3 63 54.0
SEGI_14959 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 1.6e-10 73.6 397 25.9
MCO15G359 Micromonas commoda HOM05D004423 ORTHO05D044124 4.7e-10 72.0 654 22.0


User provided reference genes

Program Settings