Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 3.5e-197 691.4 348 100.0
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 1.7e-127 459.9 327 70.3
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 6.8e-124 448.0 331 65.0
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 4.4e-123 445.3 331 66.2
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 1.7e-122 443.4 331 66.8
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 1.7e-122 443.4 350 63.4
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 6.3e-122 441.4 331 63.1
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 8.3e-122 441.0 327 66.4
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 8.3e-122 441.0 339 64.6
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 1.1e-121 440.7 332 65.4
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 2.4e-121 439.5 335 65.1
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 3.1e-121 439.1 331 66.2
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 7.0e-121 438.0 326 65.6
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 2.0e-120 436.4 321 67.3
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 2.0e-120 436.4 327 65.1
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 2.7e-120 436.0 326 65.0
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 2.7e-120 436.0 322 66.5
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 4.5e-120 435.3 336 63.4
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 4.5e-120 435.3 332 63.6
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 4.5e-120 435.3 325 64.9
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 4.5e-120 435.3 340 62.6
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 4.5e-120 435.3 328 66.2
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 7.7e-120 434.5 357 60.8
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 1.0e-119 434.1 325 65.5
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 2.9e-119 432.6 331 64.7
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 3.8e-119 432.2 320 66.2
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 5.0e-119 431.8 331 65.0
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 6.5e-119 431.4 323 66.6
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 6.5e-119 431.4 322 64.6
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 1.1e-118 430.6 323 67.5
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 5.5e-118 428.3 324 66.7
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 7.2e-118 427.9 328 65.2
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 7.2e-118 427.9 343 61.5
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.2e-117 427.2 334 65.3
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 1.6e-117 426.8 320 65.3
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 2.7e-117 426.0 345 62.0
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 2.7e-117 426.0 323 65.9
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 2.7e-117 426.0 322 64.9
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 6.1e-117 424.9 324 67.3
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.0e-116 424.1 324 66.0
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 8.8e-116 421.0 326 65.3
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 8.8e-116 421.0 331 65.0
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 1.2e-115 420.6 340 62.6
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 1.5e-115 420.2 333 62.5
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 2.0e-115 419.9 336 62.5
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 2.0e-115 419.9 340 62.1
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 3.4e-115 419.1 322 63.4
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 3.4e-115 419.1 330 63.0
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 3.4e-115 419.1 329 66.3
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 3.4e-115 419.1 324 63.9
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 7.5e-115 417.9 340 61.8
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 9.8e-115 417.5 322 63.0
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.3e-114 417.2 327 65.4
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.2e-114 416.4 327 65.4
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 2.2e-114 416.4 330 63.9
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 2.8e-114 416.0 330 63.0
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 2.8e-114 416.0 333 63.7
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 3.7e-114 415.6 326 64.7
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 1.1e-113 414.1 330 62.1
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 1.1e-113 414.1 331 63.4
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 1.8e-113 413.3 331 62.8
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 2.4e-113 412.9 330 62.1
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 2.4e-113 412.9 330 62.4
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.4e-113 412.9 303 67.3
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 3.1e-113 412.5 330 62.4
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 1.6e-112 410.2 327 63.0
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 2.0e-112 409.8 330 62.1
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 2.7e-112 409.5 327 64.2
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 2.7e-112 409.5 327 64.2
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 5.9e-112 408.3 327 64.2
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 1.3e-111 407.1 327 63.3
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 2.3e-111 406.4 336 60.7
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 2.9e-111 406.0 331 59.8
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 6.6e-111 404.8 349 59.6
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 1.9e-110 403.3 327 63.0
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 1.9e-110 403.3 321 64.8
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 4.3e-110 402.1 323 62.2
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 9.5e-110 401.0 329 61.7
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 2.8e-109 399.4 310 64.2
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 2.9e-106 389.4 283 67.8
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 2.3e-103 379.8 337 57.9
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 1.4e-100 370.5 325 58.8
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 2.3e-100 369.8 304 61.5
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 3.1e-100 369.4 339 57.2
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 8.9e-100 367.9 326 57.4
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 1.5e-99 367.1 323 57.9
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.1e-97 360.9 327 55.7
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 1.1e-97 360.9 279 65.9
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 2.0e-96 356.7 322 57.5
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 2.0e-96 356.7 289 64.4
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 1.3e-95 354.0 285 62.5
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 2.3e-95 353.2 336 53.6
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 2.2e-90 336.7 271 63.1
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 1.9e-89 333.6 267 65.5
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.9e-89 333.6 336 50.6
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 5.6e-86 322.0 281 60.5
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 8.1e-85 318.2 371 51.2
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 1.8e-84 317.0 340 50.0
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 1.2e-83 314.3 348 48.9
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 3.4e-83 312.8 340 49.4
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.4e-81 307.4 240 63.8
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 3.2e-81 306.2 261 62.1
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 8.6e-79 298.1 321 50.2
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 5.6e-78 295.4 263 58.2
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 1.6e-77 293.9 238 60.1
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 8.9e-76 288.1 349 49.6
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 7.3e-70 268.5 236 58.1
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 2.9e-58 229.9 228 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 4.2e-57 226.1 241 50.2
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 3.9e-55 219.5 283 45.9
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 1.8e-47 194.1 186 52.2
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 3.3e-46 189.9 330 36.1
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.2e-43 181.4 186 51.1
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 8.5e-42 175.3 171 52.6
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 6.3e-37 159.1 314 36.6
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 1.1e-33 148.3 186 44.6
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 1.4e-28 131.3 323 30.7
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 2.2e-26 124.0 88 68.2
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.1e-24 117.5 67 82.1
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 4.7e-24 116.3 325 29.2
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 1.8e-20 104.4 105 55.2
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 1.5e-14 84.7 162 30.9
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 3.1e-12 77.0 113 44.2
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 6.1e-08 62.8 39 66.7
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.0e-07 62.0 39 66.7
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 1.5e-06 58.2 40 62.5
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 3.4e-06 57.0 48 52.1


User provided reference genes

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