Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0319G001 Amborella trichopoda HOM05D000120 ORTHO05D026316 2.5e-33 144.8 72 100.0
MBI05_g43882_MAGBIO Magnolia biondii HOM05D000120 ORTHO05D000068 6.5e-21 103.6 72 65.3
PSO541G3174 Papaver somniferum HOM05D000120 ORTHO05D000068 1.8e-15 85.5 72 59.7
PSO675G6042 Papaver somniferum HOM05D000120 ORTHO05D000068 3.1e-15 84.7 72 58.3
CANSAT64G1978 Cannabis sativa HOM05D000120 ORTHO05D000068 7.7e-14 80.1 65 53.8
Lj4C26G5 Lonicera japonica HOM05D000120 ORTHO05D000068 1.3e-13 79.3 72 55.6
Atru.chr13.315 Acer truncatum HOM05D000120 ORTHO05D000068 1.7e-13 79.0 65 52.3
Zm00001eb319710 Zea mays HOM05D000120 ORTHO05D000068 1.7e-13 79.0 69 59.4
Thhalv10018397m.g Eutrema salsugineum HOM05D000120 ORTHO05D000068 2.9e-13 78.2 73 54.8
Ciclev10000849m.g Citrus clementina HOM05D000120 ORTHO05D000068 3.8e-13 77.8 72 54.2
Duzib116G0933 Durio zibethinus HOM05D000120 ORTHO05D000068 6.5e-13 77.0 73 54.8
Manes.05G148800 Manihot esculenta HOM05D000120 ORTHO05D000068 1.1e-12 76.3 72 52.8
SalBow8G2978 Salvia bowleyana HOM05D000120 ORTHO05D000068 1.1e-12 76.3 65 52.3
Carub.0002s2251 Capsella rubella HOM05D000120 ORTHO05D000068 1.4e-12 75.9 74 52.7
BcaC03g15608 Brassica carinata HOM05D000120 ORTHO05D000068 2.5e-12 75.1 74 50.0
BolC2t09324H Brassica oleracea HOM05D000120 ORTHO05D000068 2.5e-12 75.1 74 50.0
GSVIVG01009881001 Vitis vinifera HOM05D000120 ORTHO05D000068 2.5e-12 75.1 72 51.4
arahy.Tifrunner.gnm1.ann1.JM79CB Arachis hypogaea HOM05D000120 ORTHO05D000068 4.2e-12 74.3 73 56.2
CiPaw.08G065400 Carya illinoinensis HOM05D000120 ORTHO05D000068 4.2e-12 74.3 72 51.4
COL.COLO4_26161 Corchorus olitorius HOM05D000120 ORTHO05D000068 4.2e-12 74.3 73 52.1
THA.LOC104813792 Tarenaya hassleriana HOM05D000120 ORTHO05D000068 4.2e-12 74.3 66 53.0
A02p20130 Brassica napus HOM05D000120 ORTHO05D000068 5.5e-12 73.9 74 50.0
CARHR069070 Cardamine hirsuta HOM05D000120 ORTHO05D000068 5.5e-12 73.9 74 50.0
Duzib093G2021 Durio zibethinus HOM05D000120 ORTHO05D000068 5.5e-12 73.9 73 50.7
AL2G35660 Arabidopsis lyrata HOM05D000120 ORTHO05D000068 7.2e-12 73.6 74 52.7
BraA02t07048Z Brassica rapa HOM05D000120 ORTHO05D000068 7.2e-12 73.6 74 50.0
Potri.005G237700 Populus trichocarpa HOM05D000120 ORTHO05D000068 7.2e-12 73.6 65 53.8
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 9.4e-12 73.2 74 50.0
Cpa.g.sc26.31 Carica papaya HOM05D000120 ORTHO05D000068 9.4e-12 73.2 72 48.6
ClCG05G018370 Citrullus lanatus HOM05D000120 ORTHO05D000068 9.4e-12 73.2 72 50.0
Sp5g30780 Schrenkiella parvula HOM05D000120 ORTHO05D000068 9.4e-12 73.2 66 51.5
Sed0002940 Sechium edule HOM05D000120 ORTHO05D000068 9.4e-12 73.2 73 52.1
AT1G75680 Arabidopsis thaliana HOM05D000120 ORTHO05D000068 1.2e-11 72.8 67 53.7
CDE04G0717 Ceratophyllum demersum HOM05D000120 ORTHO05D000068 1.2e-11 72.8 73 50.7
CsaV3_3G045760 Cucumis sativus L. HOM05D000120 ORTHO05D000068 1.2e-11 72.8 72 50.0
Lj1g0012459 Lotus japonicus HOM05D000120 ORTHO05D000068 1.2e-11 72.8 73 52.1
Aa31LG4G5900 Aethionema arabicum HOM05D000120 ORTHO05D000068 1.6e-11 72.4 74 48.6
MSTRG.24250 Avicennia marina HOM05D000120 ORTHO05D000068 2.1e-11 72.0 65 44.6
Migut.N03152 Erythranthe guttata HOM05D000120 ORTHO05D000068 2.1e-11 72.0 72 47.2
arahy.Tifrunner.gnm1.ann1.CAL6M2 Arachis hypogaea HOM05D000120 ORTHO05D000068 2.7e-11 71.6 73 54.8
Sabra02G0019500 Salix brachista HOM05D000120 ORTHO05D000068 2.7e-11 71.6 65 47.7
Sabra05G0183800 Salix brachista HOM05D000120 ORTHO05D000068 2.7e-11 71.6 65 50.8
HPP92_025364 Vanilla planifolia HOM05D000120 ORTHO05D000068 2.7e-11 71.6 72 51.4
Thecc.08G042600 Theobroma cacao HOM05D000120 ORTHO05D000068 3.6e-11 71.2 73 52.1
TAR381G1545 Trochodendron aralioides HOM05D000120 ORTHO05D000068 3.6e-11 71.2 72 51.4
MSTRG.22337 Avicennia marina HOM05D000120 ORTHO05D000068 4.6e-11 70.9 67 40.3
Dinv31831 Davidia involucrata HOM05D000120 ORTHO05D000068 4.6e-11 70.9 72 47.2
Gohir.A05G187200 Gossypium hirsutum HOM05D000120 ORTHO05D000068 4.6e-11 70.9 73 50.7
MD08G1014300 Malus domestica HOM05D000120 ORTHO05D000068 4.6e-11 70.9 73 52.1
SEGI_25757 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 4.6e-11 70.9 69 46.4
Cfa006966 Carpinus fangiana HOM05D000120 ORTHO05D026316 6.1e-11 70.5 65 53.8
Ca_15487_v3 Cicer arietinum L. HOM05D000120 ORTHO05D000068 6.1e-11 70.5 73 52.1
Glyma.06G025100 Glycine max HOM05D000120 ORTHO05D000068 6.1e-11 70.5 73 50.7
Os09g0533900 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D000068 6.1e-11 70.5 69 55.1
Potri.002G023900 Populus trichocarpa HOM05D000120 ORTHO05D000068 6.1e-11 70.5 65 46.2
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 7.9e-11 70.1 65 52.3
Gohir.D05G190100 Gossypium hirsutum HOM05D000120 ORTHO05D000068 7.9e-11 70.1 73 50.7
Gorai.009G195400 Gossypium raimondii HOM05D000120 ORTHO05D000068 7.9e-11 70.1 73 50.7
Glyma.04G025000 Glycine max HOM05D000120 ORTHO05D000068 1.0e-10 69.7 73 49.3
Gorai.002G123700 Gossypium raimondii HOM05D000120 ORTHO05D000068 1.0e-10 69.7 74 50.0
Nn6g32357 Nelumbo nucifera HOM05D000120 ORTHO05D000068 1.0e-10 69.7 72 45.8
Phvul.009G016100 Phaseolus vulgaris HOM05D000120 ORTHO05D000068 1.0e-10 69.7 73 49.3
Actinidia15411 Actinidia chinensis HOM05D000120 ORTHO05D000068 1.4e-10 69.3 72 45.8
THA.LOC104811386 Tarenaya hassleriana HOM05D000120 ORTHO05D000068 1.4e-10 69.3 73 46.6
Actinidia37928 Actinidia chinensis HOM05D000120 ORTHO05D000068 2.3e-10 68.6 72 47.2
PGR083G0989 Punica granatum HOM05D000120 ORTHO05D000068 3.0e-10 68.2 72 45.8
Haze_22619 Corylus avellana HOM05D000120 ORTHO05D000068 3.9e-10 67.8 72 50.0
MELO3C003760.2 Cucumis melo HOM05D000120 ORTHO05D000068 3.9e-10 67.8 70 48.6
Psat5g013520 Pisum sativum HOM05D000120 ORTHO05D000068 3.9e-10 67.8 63 47.6
C02p33800 Brassica napus HOM05D000120 ORTHO05D000068 6.7e-10 67.0 74 47.3
CANSAT01G3265 Cannabis sativa HOM05D000120 ORTHO05D000068 6.7e-10 67.0 65 47.7
Dinv39507 Davidia involucrata HOM05D000120 ORTHO05D000068 6.7e-10 67.0 73 46.6
Cc10_g01820 Coffea canephora HOM05D000120 ORTHO05D000068 8.8e-10 66.6 72 43.1
Rhsim06G0022600 Rhododendron simsii HOM05D000120 ORTHO05D000068 8.8e-10 66.6 72 44.4
SGA_v2.0_scaffold12G05973 Striga asiatica HOM05D000120 ORTHO05D000068 8.8e-10 66.6 68 45.6
TPR.G30292 Trifolium pratense HOM05D000120 ORTHO05D000068 1.1e-09 66.2 71 47.9
BcaC08g47054 Brassica carinata HOM05D000120 ORTHO05D000068 1.5e-09 65.9 66 48.5
BolC6t40001H Brassica oleracea HOM05D000120 ORTHO05D000068 1.5e-09 65.9 66 48.5
Medtr3g113720 Medicago truncatula HOM05D000120 ORTHO05D000068 1.5e-09 65.9 69 49.3
HanXRQChr05g0146531 Helianthus annuus HOM05D000120 ORTHO05D000068 2.0e-09 65.5 67 46.3
Ah.11g038930 Amaranthus hybridus HOM05D000120 ORTHO05D000068 2.5e-09 65.1 72 48.6
GSVIVG01018793001 Vitis vinifera HOM05D000120 ORTHO05D000068 2.5e-09 65.1 67 44.8
FAN20G0076 Fragaria x ananassa HOM05D000120 ORTHO05D000068 4.3e-09 64.3 67 44.8
MD15G1013700 Malus domestica HOM05D000120 ORTHO05D000068 4.3e-09 64.3 65 50.8
Hund24105 Selenicereus undatus HOM05D000120 ORTHO05D000068 4.3e-09 64.3 68 48.5
FvH4_2g38670 Fragaria vesca HOM05D000120 ORTHO05D000068 7.4e-09 63.5 74 44.6
Thhalv10007364m.g Eutrema salsugineum HOM05D000120 ORTHO05D000068 1.7e-08 62.4 59 45.8
CSS0022147 Camellia sinensis var. sinensis HOM05D000120 ORTHO05D000068 2.2e-08 62.0 72 45.8
DCAR_009930 Daucus carota HOM05D000120 ORTHO05D000068 2.2e-08 62.0 65 47.7
Lalb_Chr11g0061951 Lupinus albus HOM05D000120 ORTHO05D000068 2.2e-08 62.0 48 60.4
AUR62033840 Chenopodium quinoa HOM05D000120 ORTHO05D000068 2.8e-08 61.6 63 49.2
AUR62035742 Chenopodium quinoa HOM05D000120 ORTHO05D000068 2.8e-08 61.6 63 49.2
FAN27G1477 Fragaria x ananassa HOM05D000120 ORTHO05D000068 2.8e-08 61.6 67 44.8
Sc02g0008550 Simmondsia chinensis HOM05D000120 ORTHO05D000068 2.8e-08 61.6 67 46.3
BraA07t31655Z Brassica rapa HOM05D000120 ORTHO05D000068 3.7e-08 61.2 69 44.9
vmacro21718 Vaccinium macrocarpon HOM05D000120 ORTHO05D000068 3.7e-08 61.2 64 43.8
Cpa.g.sc6.239 Carica papaya HOM05D000120 ORTHO05D000068 6.3e-08 60.5 66 43.9
Lsat_1_v5_gn_9_46241 Lactuca sativa HOM05D000120 ORTHO05D000068 6.3e-08 60.5 67 47.8
Actinidia16977 Actinidia chinensis HOM05D000120 ORTHO05D026316 1.1e-07 59.7 51 52.9
DCAR_013860 Daucus carota HOM05D000120 ORTHO05D000068 1.4e-07 59.3 67 46.3
EL10Ac1g02285 Beta vulgaris HOM05D000120 ORTHO05D000068 1.8e-07 58.9 63 49.2
ECA232G0856 Erigeron canadensis HOM05D000120 ORTHO05D000068 4.1e-07 57.8 65 44.6
TWI36G1102 Tripterygium wilfordii HOM05D000120 ORTHO05D000068 4.1e-07 57.8 74 47.3
HanXRQChr05g0146501 Helianthus annuus HOM05D000120 ORTHO05D000068 5.3e-07 57.4 61 42.6
HanXRQChr13g0414681 Helianthus annuus HOM05D000120 ORTHO05D000068 5.3e-07 57.4 65 44.6
Os06g0715300 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D000068 5.3e-07 57.4 59 50.8
C06p49620 Brassica napus HOM05D000120 ORTHO05D000068 6.9e-07 57.0 78 42.3
Cc09_g04560 Coffea canephora HOM05D000120 ORTHO05D000068 6.9e-07 57.0 65 43.1
FAN15G3492 Fragaria x ananassa HOM05D000120 ORTHO05D000068 6.9e-07 57.0 67 41.8
TWI56G0582 Tripterygium wilfordii HOM05D000120 ORTHO05D000068 6.9e-07 57.0 67 46.3
Lsat_1_v5_gn_2_78861 Lactuca sativa HOM05D000120 ORTHO05D000068 9.1e-07 56.6 65 43.1
Oeu046261.1 Olea europaea HOM05D000120 ORTHO05D000068 1.2e-06 56.2 74 39.2
vmacro04345 Vaccinium macrocarpon HOM05D000120 ORTHO05D000068 1.2e-06 56.2 72 40.3
TWI09G0187 Tripterygium wilfordii HOM05D000120 ORTHO05D000068 2.6e-06 55.1 67 37.3
Duzib147G1464 Durio zibethinus HOM05D000120 ORTHO05D000068 4.5e-06 54.3 71 45.1
SGA_v2.0_scaffold11G05908 Striga asiatica HOM05D000120 ORTHO05D000068 5.9e-06 53.9 35 65.7
Thecc.01G020100 Theobroma cacao HOM05D000120 ORTHO05D000068 7.7e-06 53.5 64 42.2


User provided reference genes

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