Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 0.0e+00 1365.1 676 100.0
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 5.7e-212 741.5 654 60.9
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 8.3e-211 737.6 656 59.9
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 2.4e-210 736.1 657 58.9
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 2.4e-202 709.5 660 57.7
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 7.3e-199 698.0 654 57.6
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 2.1e-198 696.4 654 58.1
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 2.8e-198 696.0 661 56.7
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 6.2e-198 694.9 656 58.4
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 8.0e-198 694.5 654 56.7
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 1.8e-197 693.3 659 57.1
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 1.2e-196 690.6 652 58.7
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 1.5e-196 690.3 656 56.9
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 4.4e-196 688.7 648 57.6
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 5.8e-196 688.3 660 57.0
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 1.1e-194 684.1 655 57.9
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 4.1e-194 682.2 650 56.6
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 1.2e-193 680.6 666 57.1
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 1.6e-193 680.2 662 57.3
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 4.6e-193 678.7 587 62.0
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 3.9e-192 675.6 662 56.0
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 5.6e-191 671.8 656 57.0
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 7.3e-191 671.4 659 56.3
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 2.1e-190 669.8 658 56.7
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 2.8e-190 669.5 666 56.3
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 4.7e-190 668.7 660 55.9
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 6.2e-190 668.3 670 56.3
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 6.2e-190 668.3 666 56.2
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 6.2e-190 668.3 658 56.1
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 5.2e-189 665.2 651 55.9
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 8.9e-189 664.5 680 55.1
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 3.4e-188 662.5 667 55.0
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 4.4e-188 662.1 651 55.9
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 1.4e-186 657.1 658 55.5
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 3.2e-186 656.0 651 55.3
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.6e-185 653.7 650 56.0
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 2.1e-185 653.3 655 56.2
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 4.6e-185 652.1 654 54.3
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 6.0e-185 651.7 665 54.6
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 1.0e-184 651.0 674 54.0
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.3e-183 645.6 667 54.1
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 9.6e-183 644.4 675 54.2
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 1.2e-182 644.0 666 54.7
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.6e-182 643.7 661 54.0
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 2.1e-182 643.3 643 55.1
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 2.4e-181 639.8 663 53.1
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 6.8e-181 638.3 660 54.1
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 2.0e-180 636.7 645 54.7
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 4.4e-180 635.6 658 54.7
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 5.8e-180 635.2 657 54.6
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 7.6e-180 634.8 677 53.2
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 6.4e-179 631.7 663 53.7
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 6.4e-179 631.7 702 51.9
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 1.1e-178 630.9 590 57.3
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 3.2e-178 629.4 673 52.7
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 9.3e-178 627.9 668 54.0
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 1.2e-177 627.5 665 53.8
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 2.1e-177 626.7 663 52.9
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 6.0e-177 625.2 668 53.4
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 7.8e-177 624.8 668 53.6
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 7.8e-177 624.8 665 53.2
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 1.7e-176 623.6 666 53.5
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 5.1e-176 622.1 673 52.6
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 6.6e-176 621.7 665 53.1
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 8.7e-176 621.3 676 53.0
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 1.1e-175 620.9 674 53.9
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 1.5e-175 620.5 650 54.0
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 2.5e-175 619.8 665 53.4
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 5.6e-175 618.6 664 52.4
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 5.6e-175 618.6 655 53.0
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 1.3e-174 617.5 662 53.5
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 2.1e-174 616.7 658 54.3
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 2.8e-174 616.3 673 52.7
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 4.8e-174 615.5 655 53.0
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 6.2e-174 615.1 666 52.1
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 6.2e-174 615.1 677 53.3
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 1.1e-173 614.4 675 52.7
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 1.4e-173 614.0 663 53.5
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 1.4e-173 614.0 689 52.2
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 1.4e-173 614.0 648 52.9
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 3.1e-173 612.8 641 54.1
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 4.0e-173 612.5 678 50.7
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 9.0e-173 611.3 669 52.2
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 1.5e-172 610.5 660 53.0
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.5e-172 610.5 660 52.1
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 3.4e-172 609.4 660 52.4
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 5.8e-172 608.6 666 53.0
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 7.6e-172 608.2 661 52.6
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 7.6e-172 608.2 649 53.9
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 2.2e-171 606.7 666 51.5
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.4e-170 603.2 693 50.9
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 2.4e-170 603.2 668 52.1
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 3.2e-170 602.8 675 51.7
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 7.1e-170 601.7 680 51.3
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 2.7e-169 599.7 656 52.1
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 7.9e-169 598.2 661 52.8
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 1.7e-168 597.0 662 52.6
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 1.7e-168 597.0 658 52.0
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 3.0e-168 596.3 653 51.5
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 9.0e-165 584.7 670 50.7
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 2.0e-164 583.6 673 53.3
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 3.4e-164 582.8 687 50.7
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 1.3e-163 580.9 683 49.6
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 6.4e-163 578.6 642 51.9
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 8.4e-163 578.2 668 50.3
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 1.4e-162 577.4 657 50.5
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 9.3e-162 574.7 651 50.7
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 4.6e-161 572.4 719 48.8
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 4.6e-161 572.4 657 50.5
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 1.0e-160 571.2 668 50.0
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 1.5e-159 567.4 684 48.8
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 2.1e-158 563.5 660 49.7
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 1.1e-157 561.2 658 49.7
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 4.0e-157 559.3 649 50.1
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 1.9e-154 550.4 691 49.9
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.2e-154 549.7 665 49.6
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 7.1e-154 548.5 651 49.2
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 1.1e-151 541.2 590 51.0
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 2.2e-147 526.9 652 47.4
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 1.9e-146 523.9 504 56.3
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.1e-144 515.8 593 50.1
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 8.7e-144 515.0 668 47.5
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 2.5e-143 513.5 512 55.3
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 6.9e-141 505.4 668 47.2
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 2.9e-139 500.0 506 53.0
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 5.0e-139 499.2 668 46.4
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 8.5e-139 498.4 612 51.6
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.0e-136 491.5 674 46.3
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 3.0e-136 490.0 500 54.6
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 5.7e-135 485.7 583 49.7
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 6.9e-133 478.8 539 52.9
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 5.3e-125 452.6 696 40.7
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 1.2e-124 451.4 507 53.5
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 4.2e-122 443.0 694 40.9
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 1.6e-121 441.0 661 44.5
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 2.6e-119 433.7 530 49.4
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 4.5e-116 422.9 575 44.9
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.9e-114 417.5 439 52.4
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 3.4e-111 406.8 464 52.8
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 8.3e-110 402.1 493 49.7
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 4.1e-109 399.8 591 44.5
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 1.3e-107 394.8 701 39.2
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 3.2e-106 390.2 648 40.7
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 1.6e-105 387.9 434 52.3
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 8.3e-102 375.6 699 37.5
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.3e-91 341.7 345 57.1
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 2.8e-89 334.0 305 59.7
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 8.0e-89 332.4 794 33.6
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.3e-86 325.1 288 61.5
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 1.0e-83 315.5 393 44.8
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 1.5e-82 311.6 248 69.4
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 2.1e-73 281.2 278 51.1
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 4.1e-69 266.9 634 34.4
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.0e-67 260.8 341 44.6
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 1.5e-66 258.5 303 46.5
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 7.6e-63 246.1 622 33.1
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 7.1e-61 239.6 120 95.8
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 1.3e-57 228.8 247 55.9
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 4.2e-53 213.8 407 38.6
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 3.2e-45 187.6 202 49.0
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 2.7e-44 184.5 747 25.4
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 2.7e-44 184.5 217 52.5
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 2.6e-39 167.9 246 41.5
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 6.0e-36 156.8 144 52.1
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 1.6e-25 122.1 114 57.0
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 5.0e-22 110.5 134 48.5
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 7.9e-20 103.2 61 83.6
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 3.0e-19 101.3 127 49.6
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 3.9e-19 100.9 88 58.0
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 6.7e-19 100.1 79 59.5
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 2.6e-18 98.2 95 53.7
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 9.1e-16 89.7 68 63.2
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 6.5e-14 83.6 63 57.1
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 2.1e-12 78.6 56 67.9
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 1.5e-10 72.4 101 40.6
SHI10371 Sapria himalayana HOM05D003691 ORTHO05D004288 8.2e-09 66.6 63 60.3
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 1.6e-07 62.4 58 51.7
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 4.5e-07 60.8 49 59.2
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 7.7e-07 60.1 46 58.7
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 7.7e-07 60.1 77 44.2
Actinidia03601 Actinidia chinensis HOM05D003691 ORTHO05D004288 1.0e-06 59.7 61 57.4
Cre13.g589300 Chlamydomonas reinhardtii HOM05D003691 ORTHO05D004288 1.0e-06 59.7 184 25.0
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 1.7e-06 58.9 60 48.3


User provided reference genes

Program Settings