Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 3.5e-129 464.9 227 100.0
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 9.9e-84 313.9 222 69.4
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 5.6e-79 298.1 187 76.5
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 9.6e-79 297.4 213 68.5
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 4.0e-77 292.0 212 67.0
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 9.0e-77 290.8 212 66.5
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.5e-76 290.0 213 67.6
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 1.0e-75 287.3 219 67.6
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 2.2e-75 286.2 211 68.2
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 6.5e-75 284.6 210 68.6
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 3.2e-74 282.3 189 70.9
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 4.2e-74 282.0 181 75.1
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 5.5e-74 281.6 194 68.0
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 7.1e-74 281.2 204 67.2
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.2e-73 280.4 224 64.7
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 1.2e-73 280.4 215 66.5
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.6e-73 280.0 193 67.4
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.6e-73 280.0 224 64.7
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 1.6e-73 280.0 209 68.9
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 2.1e-73 279.6 200 67.0
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 2.7e-73 279.3 216 63.9
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 2.7e-73 279.3 218 66.5
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 4.6e-73 278.5 191 68.6
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 4.6e-73 278.5 200 67.0
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 7.9e-73 277.7 226 63.3
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 7.9e-73 277.7 191 68.6
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 7.9e-73 277.7 199 66.3
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 1.3e-72 276.9 206 68.0
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 1.8e-72 276.6 216 62.5
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 1.8e-72 276.6 174 75.3
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 2.3e-72 276.2 207 64.7
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 5.1e-72 275.0 207 65.2
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 8.7e-72 274.2 201 64.7
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 8.7e-72 274.2 175 72.0
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 1.1e-71 273.9 208 65.9
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.9e-71 273.1 201 66.2
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 1.9e-71 273.1 195 66.7
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 1.9e-71 273.1 188 67.6
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.5e-71 272.7 201 65.2
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 3.3e-71 272.3 185 71.4
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 3.3e-71 272.3 196 67.9
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 3.3e-71 272.3 207 66.2
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 3.3e-71 272.3 184 69.0
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 4.3e-71 271.9 190 68.4
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 4.3e-71 271.9 185 71.9
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 4.3e-71 271.9 188 68.1
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 5.7e-71 271.6 200 66.5
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 7.4e-71 271.2 192 65.6
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 7.4e-71 271.2 206 65.0
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 9.6e-71 270.8 187 68.4
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 9.6e-71 270.8 188 68.1
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 1.3e-70 270.4 217 61.8
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 1.6e-70 270.0 225 63.6
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 3.7e-70 268.9 187 67.4
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 3.7e-70 268.9 187 67.4
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 3.7e-70 268.9 187 67.9
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 4.8e-70 268.5 216 61.1
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 4.8e-70 268.5 216 61.1
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 4.8e-70 268.5 200 64.5
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 6.2e-70 268.1 175 72.0
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 8.2e-70 267.7 175 70.9
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 8.2e-70 267.7 175 70.9
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 1.1e-69 267.3 191 65.4
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 1.1e-69 267.3 197 65.5
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 1.4e-69 266.9 207 65.7
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 1.4e-69 266.9 187 66.8
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 1.4e-69 266.9 182 70.3
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 5.3e-69 265.0 188 67.0
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 6.9e-69 264.6 218 62.8
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 9.0e-69 264.2 200 62.5
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 5.8e-68 261.5 216 60.6
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 1.9e-66 256.5 181 65.7
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 5.5e-66 255.0 222 57.7
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.2e-65 253.8 216 64.8
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 6.7e-64 248.1 202 60.4
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.5e-63 246.9 204 59.3
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 1.5e-63 246.9 196 62.8
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 1.3e-62 243.8 182 65.9
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.6e-62 243.4 194 64.4
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 5.3e-61 238.4 144 77.1
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 6.9e-61 238.0 137 78.8
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 4.2e-58 228.8 137 77.4
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 7.2e-58 228.0 176 58.5
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 1.6e-57 226.9 173 60.7
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 1.6e-57 226.9 173 62.4
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 6.1e-57 224.9 171 60.2
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 3.0e-56 222.6 171 59.6
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 8.8e-56 221.1 169 62.7
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 1.7e-54 216.9 188 58.5
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 1.8e-53 213.4 171 64.9
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 2.0e-52 209.9 174 62.6
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 7.7e-52 208.0 164 61.6
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.9e-51 206.1 167 63.5
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 1.9e-50 203.4 162 62.3
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 3.6e-49 199.1 148 66.2
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 4.7e-41 172.2 132 65.9
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 3.0e-40 169.5 131 64.1
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 8.8e-40 167.9 145 60.0
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 8.2e-38 161.4 123 63.4
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 1.4e-37 160.6 180 47.8
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 3.8e-35 152.5 190 43.7
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 3.8e-35 152.5 183 44.8
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 1.5e-34 150.6 149 52.3
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 1.2e-31 141.0 85 70.6
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 3.4e-31 139.4 85 69.4
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 5.9e-28 128.6 241 33.6
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 7.7e-28 128.3 170 40.6
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 9.8e-23 111.3 55 85.5
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 3.5e-20 102.8 176 35.8
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 1.7e-19 100.5 103 53.4
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 2.5e-18 96.7 97 53.6
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 6.1e-17 92.0 82 56.1
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 2.6e-15 86.7 84 57.1
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 1.0e-11 74.7 81 45.7
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 1.9e-10 70.5 34 88.2
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 2.5e-10 70.1 83 44.6
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 1.8e-08 63.9 194 25.8
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 3.1e-08 63.2 204 25.0
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 5.2e-08 62.4 33 81.8
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 2.6e-07 60.1 75 46.7
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 3.4e-07 59.7 173 25.4
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 3.4e-07 59.7 196 24.5
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 7.5e-07 58.5 200 26.0
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 4.9e-06 55.8 200 24.0
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 4.9e-06 55.8 204 24.5
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 6.4e-06 55.5 143 24.5
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 8.3e-06 55.1 205 22.9


User provided reference genes

Program Settings