Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.4e-246 855.9 455 100.0
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 1.7e-138 496.9 458 63.1
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 3.6e-133 479.2 450 63.1
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 3.3e-131 472.6 449 61.7
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 2.9e-127 459.5 453 61.4
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 2.4e-121 439.9 445 60.0
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 9.1e-121 438.0 446 60.8
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 2.7e-120 436.4 457 58.0
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 5.9e-120 435.3 433 61.4
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 7.7e-120 434.9 381 67.7
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 2.3e-119 433.3 455 60.2
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.8e-119 432.6 377 68.2
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 5.0e-119 432.2 452 59.3
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.1e-118 431.0 402 66.2
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 2.5e-118 429.9 433 61.2
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 2.5e-118 429.9 435 60.2
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 2.1e-117 426.8 444 62.2
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 2.1e-117 426.8 412 63.6
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 3.6e-117 426.0 384 68.0
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 1.0e-116 424.5 441 59.2
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 6.8e-116 421.8 461 58.1
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 6.8e-116 421.8 443 60.9
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 1.2e-115 421.0 458 58.3
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 1.2e-115 421.0 448 60.3
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 7.5e-115 418.3 446 58.7
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 1.3e-114 417.5 441 58.5
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 2.8e-114 416.4 459 56.0
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 4.9e-114 415.6 430 59.8
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 3.1e-113 412.9 435 58.2
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 3.1e-113 412.9 446 57.2
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 4.1e-113 412.5 379 67.3
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 4.1e-113 412.5 400 63.0
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 5.4e-113 412.1 326 73.6
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 5.4e-113 412.1 445 58.2
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 7.0e-113 411.8 446 57.2
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 1.2e-112 411.0 382 64.9
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 1.2e-112 411.0 379 67.3
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 4.5e-112 409.1 393 63.1
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 7.8e-112 408.3 382 64.7
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 1.0e-111 407.9 440 56.8
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 2.3e-111 406.8 413 59.3
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 2.9e-111 406.4 431 58.7
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 3.8e-111 406.0 396 62.4
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 3.8e-111 406.0 379 66.5
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 3.8e-111 406.0 444 56.3
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.9e-110 403.7 441 56.7
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 4.3e-110 402.5 396 62.6
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 7.3e-110 401.7 451 52.8
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 1.2e-109 401.0 383 64.2
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 2.1e-109 400.2 457 55.1
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 1.0e-108 397.9 365 64.9
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 3.0e-108 396.4 328 70.1
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 4.0e-108 396.0 377 64.5
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 1.2e-107 394.4 384 61.7
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 3.4e-107 392.9 331 69.2
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 4.4e-107 392.5 364 63.7
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 2.9e-106 389.8 373 62.7
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 2.9e-106 389.8 380 65.3
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 4.9e-106 389.0 362 63.8
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 1.9e-105 387.1 361 63.2
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 2.4e-105 386.7 349 68.2
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 3.2e-105 386.3 383 62.4
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 5.4e-105 385.6 341 67.4
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 9.2e-105 384.8 377 64.5
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 1.2e-104 384.4 361 62.6
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 2.0e-104 383.6 360 63.1
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 3.5e-104 382.9 420 58.1
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 1.0e-103 381.3 360 66.7
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 1.3e-103 380.9 328 68.3
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 1.7e-103 380.6 441 54.6
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 3.9e-103 379.4 430 54.2
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 5.0e-103 379.0 361 67.0
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 6.6e-103 378.6 360 67.2
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 6.6e-103 378.6 365 66.0
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 6.6e-103 378.6 427 54.6
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 8.6e-103 378.3 331 71.6
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 1.6e-101 374.0 353 66.3
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 1.6e-101 374.0 381 59.8
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 2.1e-101 373.6 377 63.9
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 2.8e-101 373.2 361 66.2
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 2.8e-101 373.2 361 66.2
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 2.8e-101 373.2 364 66.2
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 5.2e-100 369.0 365 66.0
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 8.9e-100 368.2 353 67.4
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 8.9e-100 368.2 324 69.1
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 1.5e-99 367.5 330 69.4
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 2.6e-99 366.7 386 61.7
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 7.5e-99 365.2 387 59.2
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 9.8e-99 364.8 353 66.3
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 2.2e-98 363.6 390 58.7
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 3.7e-98 362.8 331 69.2
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 3.7e-98 362.8 331 69.2
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 1.5e-94 350.9 298 62.1
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 3.1e-92 343.2 429 52.2
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 4.0e-92 342.8 258 68.6
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 6.4e-90 335.5 324 63.9
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 9.5e-86 321.6 451 51.9
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 4.0e-84 316.2 255 63.1
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.2e-80 304.7 362 55.5
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 2.1e-80 303.9 280 65.7
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 9.6e-78 295.0 420 49.0
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 3.6e-77 293.1 300 66.0
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 6.2e-77 292.4 371 55.0
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.9e-70 270.8 198 68.7
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 1.3e-61 241.5 368 43.5
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 1.2e-59 235.0 228 58.3
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 6.7e-55 219.2 303 51.8
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 1.9e-54 217.6 346 47.4
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 2.1e-53 214.2 314 49.4
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 4.8e-53 213.0 244 46.3
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 3.4e-51 206.8 249 48.2
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 3.8e-50 203.4 231 59.7
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 7.1e-49 199.1 198 68.2
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 2.5e-46 190.7 133 73.7
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.5e-43 181.4 302 45.4
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 3.9e-39 166.8 239 54.0
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 5.1e-39 166.4 254 39.4
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 4.5e-35 153.3 126 64.3
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 2.3e-31 141.0 206 39.8
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 9.1e-28 129.0 77 83.1
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 8.2e-21 105.9 164 52.4
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 3.0e-15 87.4 60 70.0
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 1.7e-10 71.6 168 34.5
Hund13037 Selenicereus undatus HOM05D006243 ORTHO05D007688 2.3e-07 61.2 107 33.6


User provided reference genes

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