Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 2.9e-255 884.8 462 100.0
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 4.7e-165 585.1 459 68.4
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 3.4e-163 578.9 467 68.3
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.7e-162 576.6 465 68.0
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 2.9e-162 575.9 471 68.2
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 7.0e-161 571.2 456 67.5
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 2.0e-160 569.7 467 66.6
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 4.6e-160 568.5 437 71.2
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 8.6e-159 564.3 449 67.9
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 5.6e-158 561.6 427 71.2
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 1.8e-156 556.6 422 70.4
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 1.8e-156 556.6 449 66.8
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 2.3e-156 556.2 420 71.0
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 5.2e-156 555.1 452 67.0
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 1.2e-155 553.9 432 68.3
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.0e-155 553.1 452 66.8
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.0e-155 553.1 463 66.5
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 2.6e-155 552.7 429 68.5
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 3.4e-155 552.4 414 70.0
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 3.4e-155 552.4 471 67.7
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 3.4e-155 552.4 437 68.6
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 5.8e-155 551.6 439 68.1
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 5.8e-155 551.6 446 66.8
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 5.8e-155 551.6 446 66.8
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 7.5e-155 551.2 427 70.5
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 7.5e-155 551.2 459 67.5
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 7.5e-155 551.2 465 66.0
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.3e-154 550.4 435 70.3
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.3e-154 550.4 435 70.3
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.7e-154 550.1 477 66.5
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 2.9e-154 549.3 411 69.8
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 4.9e-154 548.5 429 69.5
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 6.4e-154 548.1 411 70.1
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 6.4e-154 548.1 442 68.6
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 6.4e-154 548.1 445 68.8
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 1.1e-153 547.4 436 68.1
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.4e-153 546.2 434 67.5
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 2.4e-153 546.2 460 64.1
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.4e-153 546.2 429 70.4
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.4e-153 546.2 449 67.5
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 3.2e-153 545.8 447 67.1
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 5.4e-153 545.0 456 64.9
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 7.0e-153 544.7 442 67.9
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 2.0e-152 543.1 465 63.4
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 2.7e-152 542.7 440 67.5
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 4.6e-152 542.0 458 67.9
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 6.0e-152 541.6 425 69.6
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 1.3e-151 540.4 460 64.6
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 1.3e-151 540.4 430 69.3
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 3.0e-151 539.3 465 63.4
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 5.0e-151 538.5 444 66.0
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 6.6e-151 538.1 425 69.4
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 6.6e-151 538.1 420 68.8
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 6.6e-151 538.1 425 68.7
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 8.6e-151 537.7 496 60.5
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 4.3e-150 535.4 439 65.1
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 5.6e-150 535.0 412 68.4
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 5.6e-150 535.0 437 69.3
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 5.6e-150 535.0 422 68.7
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 2.1e-149 533.1 409 68.7
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 2.8e-149 532.7 426 68.5
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 3.6e-149 532.3 438 66.9
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.4e-148 530.4 463 63.5
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 1.8e-148 530.0 427 66.7
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 5.2e-148 528.5 421 68.4
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 6.8e-148 528.1 436 67.2
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.2e-147 527.3 449 63.9
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 2.9e-146 522.7 442 66.1
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 6.4e-146 521.5 419 68.0
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 6.4e-146 521.5 409 68.7
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.4e-145 520.4 409 67.7
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.4e-145 520.4 408 67.6
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.4e-145 520.4 408 67.6
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 2.4e-145 519.6 405 67.9
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 2.4e-145 519.6 413 67.8
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 4.1e-145 518.8 406 68.7
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 5.4e-145 518.5 408 68.4
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 1.6e-144 516.9 416 66.3
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 2.1e-144 516.5 428 64.7
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 1.3e-143 513.8 428 64.7
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.7e-143 513.5 405 66.7
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 1.7e-143 513.5 426 66.0
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 3.0e-143 512.7 428 64.7
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 3.9e-143 512.3 430 65.3
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 3.9e-143 512.3 430 65.3
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 6.2e-141 505.0 417 66.7
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 1.2e-139 500.7 411 64.5
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 5.8e-139 498.4 462 63.0
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 7.6e-139 498.0 549 55.0
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 1.7e-138 496.9 428 62.6
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 3.8e-138 495.7 455 62.0
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 3.2e-137 492.7 423 64.5
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 1.9e-134 483.4 520 53.3
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 2.5e-134 483.0 449 59.0
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 3.6e-133 479.2 488 57.4
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 8.9e-132 474.6 459 59.0
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 2.0e-131 473.4 398 63.3
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 2.9e-130 469.5 370 69.2
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.8e-130 469.2 426 61.5
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 8.4e-130 468.0 416 60.3
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 4.6e-128 462.2 420 59.3
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 1.7e-127 460.3 469 58.0
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 8.7e-127 458.0 422 60.0
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 9.6e-126 454.5 412 58.5
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 1.6e-125 453.8 433 57.7
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.6e-125 453.8 413 57.9
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 6.2e-125 451.8 374 66.0
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.2e-123 447.6 413 57.4
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 4.5e-123 445.7 390 63.1
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.7e-120 436.4 431 57.3
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 2.3e-119 433.3 334 71.0
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 3.9e-119 432.6 460 54.8
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 7.4e-118 428.3 384 63.0
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.3e-117 427.6 435 58.9
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 4.0e-116 422.5 411 57.9
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.8e-114 416.0 425 53.6
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 1.1e-113 414.5 382 59.4
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.2e-113 412.9 414 56.0
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.3e-111 406.8 375 57.3
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 5.5e-105 385.6 382 55.8
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 7.1e-105 385.2 382 55.2
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 6.7e-103 378.6 360 57.2
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 1.1e-100 371.3 386 56.0
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 1.3e-98 364.4 388 54.9
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 9.3e-97 358.2 383 54.6
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 2.3e-95 353.6 577 40.6
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 3.6e-88 329.7 354 53.4
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.5e-86 324.3 407 48.4
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 3.3e-86 323.2 325 55.1
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.4e-84 317.0 347 52.4
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 1.2e-83 314.7 304 59.2
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 3.3e-78 296.6 376 47.1
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 1.0e-71 275.0 271 56.8
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 1.2e-70 271.6 310 51.6
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 4.1e-68 263.1 297 49.2
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 4.2e-65 253.1 291 52.2
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 9.1e-60 235.3 121 94.2
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 6.5e-58 229.2 263 53.6
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 6.8e-55 219.2 254 51.2
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 3.4e-46 190.3 334 35.0
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 9.8e-46 188.7 105 88.6
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 9.2e-44 182.2 103 83.5
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 6.2e-40 169.5 195 49.2
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 1.4e-39 168.3 131 70.2
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 9.8e-38 162.2 135 69.6
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 1.1e-33 148.7 100 79.0
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 5.6e-25 119.8 115 56.5
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 9.5e-25 119.0 80 76.2
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 2.1e-24 117.9 120 56.7
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 5.2e-23 113.2 66 87.9
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 3.4e-22 110.5 68 75.0
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 8.4e-21 105.9 113 54.9
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 3.2e-20 104.0 84 64.3
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.2e-20 104.0 58 86.2
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 5.6e-17 93.2 51 84.3
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 7.3e-17 92.8 101 51.5
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.2e-16 92.0 57 75.4
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 3.6e-16 90.5 50 84.0
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.4e-15 87.8 51 82.4
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 3.1e-15 87.4 84 54.8
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.2e-14 85.5 51 80.4
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 3.4e-14 84.0 164 40.2
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.4e-14 83.6 55 74.5
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 5.8e-14 83.2 47 83.0
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 1.1e-12 79.0 154 37.7
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.9e-12 78.2 51 74.5
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 4.6e-11 73.6 59 62.7
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 6.0e-11 73.2 49 73.5
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 5.6e-09 66.6 81 53.1
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.6e-08 63.9 36 88.9
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 5.8e-06 56.6 87 40.2
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 7.6e-06 56.2 32 75.0


User provided reference genes

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