Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 9.0e-139 496.9 246 100.0
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 9.4e-72 274.2 241 62.7
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.4e-70 270.4 241 62.2
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 4.0e-70 268.9 238 60.5
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 4.0e-70 268.9 245 60.8
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.2e-70 268.5 241 61.8
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.2e-69 267.3 247 59.9
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.5e-69 266.9 245 61.2
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.5e-69 266.9 241 61.4
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 3.4e-69 265.8 244 59.4
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 5.7e-69 265.0 243 59.7
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 9.8e-69 264.2 230 60.4
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 9.8e-69 264.2 248 61.7
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.3e-68 263.8 243 61.3
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 1.3e-68 263.8 249 59.4
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.8e-68 262.7 249 58.2
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 4.9e-68 261.9 258 59.3
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 8.3e-68 261.2 249 58.6
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 8.3e-68 261.2 239 61.9
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 8.3e-68 261.2 247 59.9
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.1e-67 260.8 249 59.0
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.1e-67 260.8 247 59.9
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.4e-67 260.4 230 63.0
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.8e-67 260.0 241 59.8
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.8e-67 260.0 245 58.4
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 2.4e-67 259.6 241 58.5
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.4e-67 259.6 241 58.9
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.1e-67 258.8 240 61.2
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 4.1e-67 258.8 243 58.4
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 4.1e-67 258.8 246 58.5
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.4e-67 258.5 240 61.2
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 7.0e-67 258.1 244 57.4
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 9.2e-67 257.7 245 58.4
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.2e-66 257.3 244 60.7
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.2e-66 257.3 241 58.5
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.2e-66 257.3 243 59.3
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.6e-66 256.9 234 61.1
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.6e-66 256.9 244 59.8
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.6e-66 256.9 243 58.4
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 2.0e-66 256.5 240 56.7
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 2.0e-66 256.5 241 58.5
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.0e-66 256.5 241 58.5
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 2.0e-66 256.5 244 59.0
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.5e-66 255.8 238 59.7
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 4.5e-66 255.4 238 59.7
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 4.5e-66 255.4 250 59.6
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.5e-66 255.4 243 60.9
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 5.9e-66 255.0 246 58.1
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.9e-66 255.0 231 60.6
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 7.7e-66 254.6 247 59.1
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.0e-65 254.2 246 58.9
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.0e-65 254.2 240 59.2
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.0e-65 254.2 241 60.2
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.3e-65 253.8 237 61.6
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.7e-65 253.4 246 59.8
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 2.9e-65 252.7 242 57.9
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 2.9e-65 252.7 248 59.3
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 3.8e-65 252.3 246 58.9
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 5.0e-65 251.9 235 62.6
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 5.0e-65 251.9 252 56.3
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 5.0e-65 251.9 241 57.7
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 8.6e-65 251.1 263 56.7
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 8.6e-65 251.1 237 59.9
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.1e-64 250.8 247 57.1
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.1e-64 250.8 244 58.2
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.5e-64 250.4 246 60.2
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.5e-64 250.4 234 58.5
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.5e-64 249.6 245 57.1
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.5e-64 249.6 238 57.1
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 3.3e-64 249.2 249 55.4
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 3.3e-64 249.2 246 59.8
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 4.3e-64 248.8 231 58.9
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 9.5e-64 247.7 235 61.3
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 9.5e-64 247.7 250 55.6
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 9.5e-64 247.7 243 59.3
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.2e-63 247.3 238 56.7
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 1.2e-63 247.3 248 56.0
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.6e-63 246.9 239 56.5
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 2.8e-63 246.1 239 55.6
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 2.8e-63 246.1 250 55.2
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 3.6e-63 245.7 240 55.4
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 3.6e-63 245.7 239 55.6
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 4.7e-63 245.4 239 58.2
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 8.0e-63 244.6 237 56.1
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 8.0e-63 244.6 237 56.5
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 8.0e-63 244.6 235 57.0
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.0e-63 244.6 246 55.7
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 8.0e-63 244.6 244 58.6
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.0e-62 244.2 246 58.1
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.4e-62 243.8 238 55.5
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.4e-62 243.8 246 55.3
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 1.4e-62 243.8 244 57.4
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.8e-62 243.4 239 55.2
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.8e-62 243.4 245 54.7
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 1.8e-62 243.4 236 58.1
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 1.8e-62 243.4 243 58.8
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 2.3e-62 243.0 237 56.5
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 3.0e-62 242.7 237 55.7
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 3.0e-62 242.7 246 56.9
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 3.0e-62 242.7 244 58.2
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.0e-62 242.3 246 54.9
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.0e-62 242.3 246 54.9
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.0e-62 242.3 246 54.9
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 5.2e-62 241.9 239 55.2
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 6.8e-62 241.5 246 55.3
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 6.8e-62 241.5 246 55.3
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 1.2e-61 240.7 237 57.8
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.2e-61 240.7 241 55.2
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 2.0e-61 240.0 247 56.3
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 2.0e-61 240.0 237 56.5
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 2.6e-61 239.6 246 54.9
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 4.4e-61 238.8 205 63.4
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 5.7e-61 238.4 239 54.8
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.7e-60 236.9 237 54.4
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 2.2e-60 236.5 250 56.4
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 4.9e-60 235.3 235 54.9
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.3e-60 234.6 240 56.7
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 8.3e-60 234.6 219 58.4
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 8.3e-60 234.6 241 56.4
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 3.2e-59 232.6 242 54.1
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 7.0e-59 231.5 247 55.5
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 9.2e-59 231.1 246 52.8
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.0e-58 229.9 212 59.9
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 2.7e-58 229.6 237 53.2
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 2.7e-58 229.6 237 53.2
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 2.7e-58 229.6 237 53.2
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 2.7e-58 229.6 241 55.6
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 3.5e-58 229.2 307 47.2
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 7.8e-58 228.0 194 62.4
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.3e-57 227.3 248 52.8
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 3.0e-57 226.1 237 52.3
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.8e-55 219.5 228 53.9
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 6.2e-55 218.4 243 51.9
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 9.8e-53 211.1 315 43.2
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.2e-52 209.9 234 52.1
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 1.2e-50 204.1 258 47.7
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 8.6e-49 198.0 238 49.6
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.1e-48 197.6 237 48.5
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 7.3e-48 194.9 305 42.3
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 8.9e-46 188.0 238 45.4
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.0e-45 186.8 139 66.9
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 5.8e-45 185.3 126 72.2
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 6.4e-44 181.8 128 68.8
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 6.4e-44 181.8 238 47.5
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.2e-43 179.5 150 62.0
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.1e-42 176.8 150 61.3
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.3e-41 173.3 150 60.0
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 2.3e-41 173.3 237 45.6
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.2e-39 167.5 98 80.6
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.7e-36 157.1 261 39.1
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.3e-33 147.5 200 47.0
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.3e-33 147.5 105 70.5
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 7.3e-32 141.7 255 38.8
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.7e-25 120.6 89 65.2
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.0e-22 109.4 89 55.1
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 3.5e-18 96.3 133 45.9
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 8.7e-17 91.7 136 46.3
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 4.3e-16 89.4 112 53.6
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 5.6e-16 89.0 102 40.2
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 6.2e-15 85.5 90 43.3
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 6.9e-14 82.0 125 46.4
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.3e-12 77.8 58 65.5
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 2.4e-11 73.6 99 44.4
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 4.2e-11 72.8 163 30.7
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 6.0e-10 68.9 81 46.9
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 3.3e-08 63.2 79 49.4
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 4.8e-07 59.3 79 46.8
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 6.9e-06 55.5 123 33.3


User provided reference genes

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