Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 6.9e-242 840.1 393 100.0
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 4.5e-193 677.9 387 79.6
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 8.5e-192 673.7 388 79.6
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.2e-188 663.3 382 78.3
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.6e-188 662.1 376 80.9
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 2.6e-188 662.1 384 78.9
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 3.4e-188 661.8 388 78.6
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 5.7e-188 661.0 385 77.7
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 9.8e-188 660.2 379 79.9
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 1.7e-187 659.4 390 78.7
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 8.3e-187 657.1 385 78.2
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.1e-186 656.8 385 77.7
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 2.4e-186 655.6 388 77.6
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 4.1e-186 654.8 388 78.6
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 7.0e-186 654.1 389 77.4
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 7.0e-186 654.1 385 77.9
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 9.2e-186 653.7 385 77.9
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 1.2e-185 653.3 379 79.2
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 1.6e-185 652.9 378 78.8
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 2.7e-185 652.1 382 78.3
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 3.5e-185 651.7 383 79.1
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 5.9e-185 651.0 375 79.5
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 7.7e-185 650.6 379 79.4
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 1.0e-184 650.2 386 76.7
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 1.3e-184 649.8 373 79.1
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.7e-184 649.4 379 77.3
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 2.3e-184 649.0 387 75.5
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 2.3e-184 649.0 389 76.9
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 2.3e-184 649.0 388 75.8
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 5.0e-184 647.9 389 74.8
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 5.0e-184 647.9 376 77.9
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 5.0e-184 647.9 377 78.0
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 8.6e-184 647.1 376 77.7
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 8.6e-184 647.1 376 77.4
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 8.6e-184 647.1 379 78.1
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.1e-183 646.7 379 77.0
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.1e-183 646.7 357 80.7
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 1.1e-183 646.7 383 78.3
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 1.5e-183 646.4 385 76.6
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 1.9e-183 646.0 379 78.4
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 2.5e-183 645.6 392 75.8
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 2.5e-183 645.6 381 78.0
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.3e-183 645.2 378 77.0
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 3.3e-183 645.2 384 76.6
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 3.3e-183 645.2 348 83.0
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 4.3e-183 644.8 377 78.2
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 5.6e-183 644.4 390 76.4
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 5.6e-183 644.4 377 77.7
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 7.3e-183 644.0 383 76.8
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 7.3e-183 644.0 385 76.1
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 9.5e-183 643.7 383 76.8
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 1.6e-182 642.9 383 76.5
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 1.6e-182 642.9 379 77.8
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 1.6e-182 642.9 384 76.6
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 1.6e-182 642.9 374 78.3
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.6e-182 642.9 376 77.1
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 1.6e-182 642.9 385 75.8
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 1.6e-182 642.9 387 75.7
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 2.1e-182 642.5 374 77.8
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 2.1e-182 642.5 375 77.9
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 2.8e-182 642.1 386 76.7
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 2.8e-182 642.1 377 77.5
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 2.8e-182 642.1 375 77.1
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 2.8e-182 642.1 380 76.8
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 2.8e-182 642.1 375 78.4
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 3.6e-182 641.7 378 78.0
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 4.7e-182 641.3 376 76.9
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 4.7e-182 641.3 385 77.1
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 6.1e-182 641.0 373 78.8
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 8.0e-182 640.6 378 77.8
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.0e-181 640.2 393 76.1
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 1.0e-181 640.2 379 76.5
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.4e-181 639.8 383 76.5
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 1.4e-181 639.8 382 78.3
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.4e-181 639.8 385 75.6
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 2.3e-181 639.0 394 74.9
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 3.0e-181 638.6 380 77.4
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 3.0e-181 638.6 380 77.4
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 4.0e-181 638.3 346 81.5
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 5.2e-181 637.9 384 75.5
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 5.2e-181 637.9 382 75.9
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 6.8e-181 637.5 387 75.7
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 6.8e-181 637.5 364 78.6
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 1.5e-180 636.3 376 76.6
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 4.4e-180 634.8 381 76.4
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 5.7e-180 634.4 383 75.7
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 7.5e-180 634.0 364 78.3
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 7.5e-180 634.0 380 77.1
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 7.5e-180 634.0 364 78.0
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 7.5e-180 634.0 385 76.6
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 9.8e-180 633.6 364 78.3
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 1.7e-179 632.9 346 80.9
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 2.2e-179 632.5 384 76.3
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.9e-179 632.1 377 76.7
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 3.7e-179 631.7 375 76.3
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 1.8e-178 629.4 380 76.1
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 2.4e-178 629.0 380 76.3
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 2.4e-178 629.0 380 76.6
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 3.5e-177 625.2 377 74.8
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 4.6e-177 624.8 381 74.8
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 1.7e-176 622.9 381 75.6
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 3.9e-176 621.7 392 73.2
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 3.9e-176 621.7 373 77.7
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 6.6e-176 620.9 382 76.2
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 9.5e-175 617.1 380 75.3
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.2e-174 616.7 379 75.2
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 2.1e-174 615.9 379 74.7
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 2.1e-174 615.9 410 70.7
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 5.2e-173 611.3 455 64.6
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.1e-170 603.6 372 73.4
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.9e-170 602.8 321 82.6
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.6e-169 599.7 322 84.2
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 1.6e-169 599.7 384 72.1
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.6e-169 599.7 381 71.9
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 4.7e-166 588.2 348 78.4
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 8.1e-166 587.4 326 81.6
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 2.0e-164 582.8 383 71.5
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 3.7e-163 578.6 377 72.1
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 4.3e-159 565.1 378 70.9
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 3.1e-157 558.9 379 67.5
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 5.2e-157 558.1 374 70.3
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 8.9e-157 557.4 309 80.9
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.4e-154 550.1 291 84.2
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 3.5e-153 545.4 288 84.0
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 8.6e-152 540.8 289 83.0
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 5.4e-146 521.5 290 80.7
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 4.8e-142 508.4 334 67.7
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 2.6e-140 502.7 270 84.4
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 2.8e-134 482.6 290 75.9
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.2e-122 442.6 293 71.0
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.3e-120 437.2 391 52.9
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 6.9e-117 424.9 285 65.6
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 4.6e-113 412.1 250 75.2
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.1e-109 399.4 237 74.7
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.5e-108 397.1 220 80.0
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 5.5e-106 388.7 339 51.3
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.4e-93 346.7 316 52.5
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 9.4e-90 334.7 209 75.1
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.3e-87 326.2 341 46.6
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 2.5e-66 256.9 139 82.7
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 4.0e-64 249.6 179 65.9
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 9.2e-53 211.8 122 77.9
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.7e-52 210.3 109 83.5
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 4.3e-50 203.0 124 73.4
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 5.2e-48 196.1 137 67.2
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 6.4e-46 189.1 127 70.1
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.8e-32 144.4 85 77.6
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 5.2e-32 142.9 85 76.5
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 1.7e-27 127.9 80 68.8
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 4.8e-25 119.8 101 58.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 6.0e-12 76.3 52 65.4


User provided reference genes

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