Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 1.4e-81 306.2 152 100.0
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 2.6e-64 248.8 148 80.4
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 7.6e-64 247.3 144 81.2
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 7.6e-64 247.3 146 78.1
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 1.3e-63 246.5 140 81.4
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 1.7e-63 246.1 139 82.0
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.9e-63 245.4 140 81.4
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.9e-63 245.4 140 81.4
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 3.8e-63 245.0 138 82.6
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 3.8e-63 245.0 138 83.3
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 5.0e-63 244.6 140 80.7
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 5.0e-63 244.6 140 80.7
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 8.5e-63 243.8 140 80.7
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 8.5e-63 243.8 145 79.3
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 1.1e-62 243.4 144 79.2
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 1.1e-62 243.4 140 80.7
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 1.9e-62 242.7 142 79.6
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 2.5e-62 242.3 147 80.3
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 2.5e-62 242.3 142 80.3
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 2.5e-62 242.3 140 80.7
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 3.2e-62 241.9 142 78.2
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 3.2e-62 241.9 142 78.2
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 4.2e-62 241.5 142 78.2
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 4.2e-62 241.5 138 81.2
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 4.2e-62 241.5 142 78.2
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 5.5e-62 241.1 143 78.3
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 5.5e-62 241.1 143 78.3
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 5.5e-62 241.1 137 81.8
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 7.2e-62 240.7 147 77.6
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 7.2e-62 240.7 150 74.7
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 1.2e-61 240.0 138 81.2
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 1.2e-61 240.0 146 78.1
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 1.6e-61 239.6 144 75.7
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 1.6e-61 239.6 140 80.0
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 2.1e-61 239.2 142 78.2
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 2.1e-61 239.2 150 74.7
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.7e-61 238.8 141 77.3
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 3.6e-61 238.4 144 77.1
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 3.6e-61 238.4 142 77.5
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 3.6e-61 238.4 144 75.7
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 3.6e-61 238.4 137 81.0
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 4.6e-61 238.0 144 75.0
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 4.6e-61 238.0 147 75.5
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 6.1e-61 237.7 143 78.3
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 6.1e-61 237.7 142 78.2
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 7.9e-61 237.3 140 78.6
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 7.9e-61 237.3 141 76.6
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 7.9e-61 237.3 143 79.7
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.0e-60 236.9 141 76.6
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 1.3e-60 236.5 152 73.7
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.8e-60 236.1 142 76.8
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 1.8e-60 236.1 143 76.9
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.8e-60 236.1 147 76.9
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 1.8e-60 236.1 156 71.8
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 1.8e-60 236.1 143 78.3
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 3.0e-60 235.3 142 74.6
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 3.0e-60 235.3 147 72.8
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 3.0e-60 235.3 147 76.9
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 5.1e-60 234.6 140 78.6
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 8.7e-60 233.8 139 77.0
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 8.7e-60 233.8 146 76.0
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 1.1e-59 233.4 141 78.0
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 1.5e-59 233.0 140 77.1
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 1.5e-59 233.0 146 74.0
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 1.9e-59 232.6 138 76.8
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 1.9e-59 232.6 146 73.3
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.9e-59 232.6 137 77.4
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 2.5e-59 232.3 147 73.5
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 4.3e-59 231.5 142 72.5
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 5.7e-59 231.1 143 75.5
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 5.7e-59 231.1 137 76.6
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 5.7e-59 231.1 145 75.9
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 7.4e-59 230.7 140 74.3
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 9.7e-59 230.3 142 76.1
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 9.7e-59 230.3 139 77.7
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.3e-58 229.9 143 73.4
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 1.6e-58 229.6 138 76.1
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 2.2e-58 229.2 157 71.3
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 2.2e-58 229.2 142 76.1
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 2.8e-58 228.8 166 68.1
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 3.7e-58 228.4 138 76.8
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 3.7e-58 228.4 140 75.7
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 4.8e-58 228.0 148 73.6
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 4.8e-58 228.0 143 72.0
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 6.3e-58 227.6 143 71.3
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 8.2e-58 227.3 143 71.3
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 8.2e-58 227.3 142 71.8
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 1.1e-57 226.9 143 72.0
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 3.1e-57 225.3 138 73.9
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 3.1e-57 225.3 142 73.2
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 9.0e-57 223.8 139 76.3
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 1.2e-56 223.4 152 70.4
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 1.5e-56 223.0 152 71.1
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 2.6e-56 222.2 141 73.0
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 3.4e-56 221.9 169 64.5
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 5.9e-56 221.1 140 70.7
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 2.9e-55 218.8 138 71.7
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.4e-54 216.5 142 73.2
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 1.9e-54 216.1 154 66.2
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 7.9e-53 210.7 140 70.7
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 6.7e-52 207.6 139 69.1
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 1.1e-51 206.8 139 68.3
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 2.6e-51 205.7 139 67.6
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 1.3e-50 203.4 139 68.3
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 2.2e-50 202.6 139 67.6
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 8.2e-50 200.7 139 67.6
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 8.2e-50 200.7 139 67.6
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 8.2e-50 200.7 139 67.6
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 1.1e-49 200.3 141 66.0
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 1.8e-49 199.5 137 67.9
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 1.8e-49 199.5 139 66.9
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 1.8e-49 199.5 192 54.2
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 5.3e-49 198.0 148 66.9
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 9.1e-49 197.2 145 66.9
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 2.0e-48 196.1 139 66.2
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 2.0e-48 196.1 139 66.2
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 2.6e-48 195.7 139 65.5
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 2.6e-48 195.7 139 65.5
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 5.9e-48 194.5 137 66.4
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 1.1e-43 180.3 136 65.4
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 3.3e-43 178.7 140 63.6
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 6.3e-42 174.5 130 62.3
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 9.1e-41 170.6 144 56.2
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 6.5e-39 164.5 98 75.5
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 3.3e-35 152.1 104 67.3
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 1.7e-34 149.8 146 48.6
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 7.0e-33 144.4 90 73.3
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 2.2e-31 139.4 137 48.2
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 1.9e-30 136.3 90 67.8
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 2.7e-29 132.5 98 63.3
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 7.5e-27 124.4 150 46.0
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 3.7e-26 122.1 84 66.7
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 7.7e-24 114.4 116 50.9
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 1.3e-23 113.6 61 82.0
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 2.1e-21 106.3 116 47.4
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.4e-12 77.0 48 68.8
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 6.4e-10 68.2 46 69.6


User provided reference genes

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