Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.2e-132 476.5 234 100.0
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 1.8e-88 329.7 228 69.7
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.0e-87 326.2 229 69.0
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 2.0e-87 326.2 229 69.0
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 7.6e-87 324.3 218 71.1
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 1.7e-86 323.2 224 70.5
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 4.9e-86 321.6 224 70.5
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.1e-85 317.8 209 74.6
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 7.1e-85 317.8 218 71.1
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 9.3e-85 317.4 219 72.1
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.2e-84 317.0 230 68.7
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 2.3e-83 312.8 232 67.7
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 3.9e-83 312.0 229 67.7
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 5.1e-83 311.6 209 75.1
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 6.6e-83 311.2 219 69.9
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 6.6e-83 311.2 212 71.7
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 6.6e-83 311.2 216 70.8
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.5e-82 310.1 218 70.2
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.9e-82 309.7 229 66.8
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.9e-82 309.7 229 66.8
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 5.6e-82 308.1 219 69.9
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.1e-81 306.2 218 69.3
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 2.8e-81 305.8 218 69.7
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 2.8e-81 305.8 229 67.2
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 3.6e-81 305.4 229 65.5
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 4.8e-81 305.1 229 65.9
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 8.1e-81 304.3 229 66.8
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 8.1e-81 304.3 231 66.2
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.1e-80 303.9 230 65.7
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 1.1e-80 303.9 224 66.1
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 1.4e-80 303.5 230 68.7
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.8e-80 303.1 218 68.3
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 1.8e-80 303.1 218 67.9
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 3.1e-80 302.4 224 67.4
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 3.1e-80 302.4 229 62.9
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 4.0e-80 302.0 218 67.0
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 4.0e-80 302.0 209 71.3
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.3e-80 301.6 223 67.3
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 5.3e-80 301.6 219 68.5
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 6.9e-80 301.2 218 68.3
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 6.9e-80 301.2 218 68.3
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 9.0e-80 300.8 223 65.9
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 1.2e-79 300.4 228 64.0
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 1.2e-79 300.4 219 68.0
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.5e-79 300.1 223 65.9
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 3.4e-79 298.9 218 69.7
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 4.5e-79 298.5 229 67.7
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 4.5e-79 298.5 218 68.3
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 4.5e-79 298.5 219 68.5
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 5.8e-79 298.1 219 68.5
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 9.9e-79 297.4 219 68.0
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 9.9e-79 297.4 219 68.0
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 2.9e-78 295.8 220 68.2
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 4.9e-78 295.0 218 67.4
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 6.4e-78 294.7 224 66.1
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 8.4e-78 294.3 219 68.0
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.4e-77 293.5 219 67.6
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.4e-77 293.5 218 65.6
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 2.4e-77 292.7 220 68.2
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 3.2e-77 292.4 232 65.5
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 4.2e-77 292.0 223 64.6
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 4.2e-77 292.0 218 65.6
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 5.4e-77 291.6 228 63.2
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 5.4e-77 291.6 211 69.7
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 7.1e-77 291.2 218 66.5
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 7.1e-77 291.2 232 65.9
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 9.3e-77 290.8 231 66.2
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.2e-76 290.4 223 67.3
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 1.2e-76 290.4 218 66.1
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.6e-76 290.0 218 66.1
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 2.1e-76 289.7 206 68.4
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 2.7e-76 289.3 233 62.2
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 2.7e-76 289.3 222 64.9
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 3.5e-76 288.9 231 65.8
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 3.5e-76 288.9 229 64.6
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 7.9e-76 287.7 247 61.1
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.0e-75 287.3 220 67.3
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 1.3e-75 287.0 220 65.9
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.8e-75 286.6 232 63.4
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 3.0e-75 285.8 218 65.1
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 3.9e-75 285.4 225 67.1
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 3.9e-75 285.4 218 66.1
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 3.9e-75 285.4 227 62.6
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 5.1e-75 285.0 231 61.9
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.1e-74 283.9 231 61.5
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.5e-74 283.5 222 62.2
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.5e-74 283.5 225 60.4
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 1.9e-74 283.1 220 67.3
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 2.5e-74 282.7 231 61.0
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 3.3e-74 282.3 222 61.7
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 3.3e-74 282.3 217 65.0
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.3e-74 282.3 229 62.0
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 4.3e-74 282.0 248 61.3
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 7.4e-74 281.2 229 62.9
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 7.4e-74 281.2 221 65.2
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 9.6e-74 280.8 219 62.6
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 1.6e-73 280.0 224 62.9
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.6e-73 280.0 211 68.2
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 3.6e-73 278.9 218 63.8
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.4e-72 276.9 179 74.9
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.8e-72 276.6 220 65.0
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 2.4e-72 276.2 220 64.5
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 6.9e-72 274.6 225 60.9
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 9.0e-72 274.2 210 64.3
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 2.0e-71 273.1 233 59.2
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 2.6e-71 272.7 206 65.5
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 4.5e-71 271.9 206 65.5
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 2.9e-70 269.2 182 71.4
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 3.8e-70 268.9 179 72.6
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.1e-69 267.3 220 61.8
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 1.9e-69 266.5 224 62.9
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 2.4e-69 266.2 231 60.6
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 4.2e-69 265.4 214 63.1
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 7.1e-69 264.6 180 72.2
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.5e-68 262.3 197 66.5
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.0e-67 259.2 179 70.4
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 3.9e-67 258.8 170 72.4
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 3.3e-66 255.8 198 64.1
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 3.3e-66 255.8 198 63.6
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 7.4e-66 254.6 152 78.3
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 8.1e-65 251.1 172 70.9
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.5e-63 245.4 235 56.6
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.5e-61 239.6 207 59.9
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 7.9e-60 234.6 209 60.3
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.0e-59 234.2 142 76.8
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.1e-57 226.5 187 62.6
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.1e-56 224.2 169 72.2
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 7.6e-55 218.0 208 55.8
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.0e-54 217.6 161 64.6
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.3e-54 217.2 142 72.5
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.2e-54 216.5 140 72.9
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 2.3e-51 206.5 222 52.3
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 9.7e-50 201.1 241 48.1
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 9.7e-50 201.1 199 52.8
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 1.3e-49 200.7 126 73.8
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.8e-48 196.8 155 64.5
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.4e-48 196.4 242 49.2
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 8.5e-46 188.0 160 61.2
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 2.5e-45 186.4 107 80.4
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 2.7e-44 183.0 174 54.0
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.7e-41 173.7 236 44.5
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 4.8e-41 172.2 109 75.2
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.8e-40 170.2 262 42.0
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 2.2e-38 163.3 144 55.6
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 1.4e-37 160.6 116 67.2
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 4.2e-37 159.1 183 48.6
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 5.2e-35 152.1 89 76.4
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 2.0e-34 150.2 189 47.1
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.3e-34 149.4 247 39.7
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 7.7e-31 138.3 76 88.2
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 2.2e-30 136.7 110 63.6
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 6.3e-25 118.6 70 75.7
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 4.5e-23 112.5 70 71.4
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 3.2e-21 106.3 175 41.7
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 6.1e-20 102.1 173 42.2
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 2.6e-18 96.7 90 51.1
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 3.4e-18 96.3 141 39.0
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 1.9e-13 80.5 69 55.1
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 2.5e-13 80.1 216 28.7
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 4.2e-13 79.3 69 55.1
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 5.2e-11 72.4 71 54.9
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 9.2e-08 61.6 65 53.8
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 9.2e-08 61.6 40 65.0
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 7.8e-07 58.5 53 49.1
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.8e-06 56.2 41 58.5


User provided reference genes

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