Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0315G109 Amborella trichopoda HOM05D000169 ORTHO05D004780 4.9e-131 471.1 231 100.0
MBI01_g30862_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D004780 8.3e-62 241.1 345 42.9
Ca_20416_v3 Cicer arietinum L. HOM05D000169 ORTHO05D004780 6.2e-57 224.9 331 43.2
Manes.11G037400 Manihot esculenta HOM05D000169 ORTHO05D004780 6.2e-57 224.9 363 39.9
Haze_16349 Corylus avellana HOM05D000169 ORTHO05D004780 5.2e-56 221.9 339 41.3
vmacro18881 Vaccinium macrocarpon HOM05D000169 ORTHO05D004780 2.6e-55 219.5 381 37.5
DCAR_026335 Daucus carota HOM05D000169 ORTHO05D004780 3.4e-55 219.2 338 40.8
Actinidia21686 Actinidia chinensis HOM05D000169 ORTHO05D004780 1.3e-54 217.2 375 37.3
Ca_20370_v3 Cicer arietinum L. HOM05D000169 ORTHO05D004780 2.2e-54 216.5 331 41.4
ECA232G3766 Erigeron canadensis HOM05D000169 ORTHO05D004780 2.2e-54 216.5 362 38.4
SalBow2G1665 Salvia bowleyana HOM05D000169 ORTHO05D004780 2.9e-54 216.1 320 41.9
CDE05G2910 Ceratophyllum demersum HOM05D000169 ORTHO05D004780 3.7e-54 215.7 137 75.2
Gohir.D10G069600 Gossypium hirsutum HOM05D000169 ORTHO05D004780 1.4e-53 213.8 325 41.2
PSO782G1073 Papaver somniferum HOM05D000169 ORTHO05D004780 3.2e-53 212.6 137 72.3
Potri.001G185500 Populus trichocarpa HOM05D000169 ORTHO05D004780 4.1e-53 212.2 363 37.7
CSS0039624 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D004780 5.4e-53 211.8 366 36.6
Thecc.06G093200 Theobroma cacao HOM05D000169 ORTHO05D004780 5.4e-53 211.8 366 36.9
Lj3g0027736 Lotus japonicus HOM05D000169 ORTHO05D004780 2.1e-52 209.9 138 71.0
Nitab4.5_0001315g0060 Nicotiana tabacum HOM05D000169 ORTHO05D004780 2.1e-52 209.9 332 40.1
TAR636G0874 Trochodendron aralioides HOM05D000169 ORTHO05D004780 2.1e-52 209.9 137 73.0
GSVIVG01017056001 Vitis vinifera HOM05D000169 ORTHO05D004780 2.1e-52 209.9 137 73.0
Ah.01g021720 Amaranthus hybridus HOM05D000169 ORTHO05D004780 2.7e-52 209.5 341 39.0
Cfa002101 Carpinus fangiana HOM05D000169 ORTHO05D004780 3.5e-52 209.1 379 37.2
VMungo0331G1448 Vigna mungo HOM05D000169 ORTHO05D004780 3.5e-52 209.1 333 39.3
Medtr4g011790 Medicago truncatula HOM05D000169 ORTHO05D004780 4.6e-52 208.8 372 37.9
PSO566G0043 Papaver somniferum HOM05D000169 ORTHO05D004780 4.6e-52 208.8 137 72.3
Psat7g253800 Pisum sativum HOM05D000169 ORTHO05D004780 6.0e-52 208.4 372 37.9
Sabra01G0154600 Salix brachista HOM05D000169 ORTHO05D004780 6.0e-52 208.4 363 36.6
Hund06638 Selenicereus undatus HOM05D000169 ORTHO05D004780 7.8e-52 208.0 345 38.3
Nitab4.5_0011683g0010 Nicotiana tabacum HOM05D000169 ORTHO05D004780 1.3e-51 207.2 329 39.8
CiPaw.01G235100 Carya illinoinensis HOM05D000169 ORTHO05D004780 1.7e-51 206.8 382 35.6
Dinv30473 Davidia involucrata HOM05D000169 ORTHO05D004780 2.3e-51 206.5 137 70.8
Ciclev10025185m.g Citrus clementina HOM05D000169 ORTHO05D004780 3.0e-51 206.1 137 71.5
Nn2g11670 Nelumbo nucifera HOM05D000169 ORTHO05D004780 3.0e-51 206.1 377 37.1
Aqoxy7G01575 Aquilegia oxysepala HOM05D000169 ORTHO05D004780 3.9e-51 205.7 381 36.2
Eucgr.J02955 Eucalyptus grandis HOM05D000169 ORTHO05D004780 8.6e-51 204.5 363 36.6
Atru.chr1.3409_Atru.chr1.3410 Acer truncatum HOM05D000169 ORTHO05D004780 1.1e-50 204.1 366 36.3
Psat7g253640 Pisum sativum HOM05D000169 ORTHO05D004780 1.1e-50 204.1 372 37.4
Cc04_g02950 Coffea canephora HOM05D000169 ORTHO05D004780 1.5e-50 203.8 137 70.8
ATR0315G134 Amborella trichopoda HOM05D000169 ORTHO05D004780 1.9e-50 203.4 137 70.1
Medtr4g013210 Medicago truncatula HOM05D000169 ORTHO05D004780 1.9e-50 203.4 372 37.1
TPR.G5245 Trifolium pratense HOM05D000169 ORTHO05D004780 1.9e-50 203.4 138 70.3
CANSAT56G0566 Cannabis sativa HOM05D000169 ORTHO05D004780 2.5e-50 203.0 381 35.7
TPR.G38605 Trifolium pratense HOM05D000169 ORTHO05D004780 2.5e-50 203.0 370 37.6
TWI12G1479 Tripterygium wilfordii HOM05D000169 ORTHO05D004780 2.5e-50 203.0 362 37.3
arahy.Tifrunner.gnm1.ann1.5X7XAP Arachis hypogaea HOM05D000169 ORTHO05D004780 4.3e-50 202.2 372 36.3
CiPaw.02G148300 Carya illinoinensis HOM05D000169 ORTHO05D004780 4.3e-50 202.2 137 70.8
Lsat_1_v5_gn_4_103101 Lactuca sativa HOM05D000169 ORTHO05D004780 4.3e-50 202.2 321 39.9
EL10Ac9g22056 Beta vulgaris HOM05D000169 ORTHO05D004780 7.3e-50 201.4 346 39.3
FAN05G1415 Fragaria x ananassa HOM05D000169 ORTHO05D004780 9.5e-50 201.1 335 39.1
FAN14G0873 Fragaria x ananassa HOM05D000169 ORTHO05D004780 9.5e-50 201.1 335 39.1
HanXRQChr16g0500801 Helianthus annuus HOM05D000169 ORTHO05D004780 9.5e-50 201.1 350 38.0
Sc15g0002130 Simmondsia chinensis HOM05D000169 ORTHO05D004780 9.5e-50 201.1 367 36.8
TWI75G0003 Tripterygium wilfordii HOM05D000169 ORTHO05D004780 9.5e-50 201.1 362 37.6
Lalb_Chr25g0280021 Lupinus albus HOM05D000169 ORTHO05D004780 2.1e-49 199.9 138 68.8
AUR62011680 Chenopodium quinoa HOM05D000169 ORTHO05D004780 2.8e-49 199.5 371 36.1
HanXRQChr16g0501111 Helianthus annuus HOM05D000169 ORTHO05D004780 2.8e-49 199.5 128 74.2
Prupe.3G065200 Prunus persica HOM05D000169 ORTHO05D004780 2.8e-49 199.5 137 70.1
Migut.I00934 Erythranthe guttata HOM05D000169 ORTHO05D004780 3.6e-49 199.1 366 36.6
Hma1.2p1_1195F.1_g265900 Hydrangea macrophylla HOM05D000169 ORTHO05D004780 3.6e-49 199.1 374 35.8
Lj5A57T75 Lonicera japonica HOM05D000169 ORTHO05D004780 3.6e-49 199.1 140 69.3
AT3G16170 Arabidopsis thaliana HOM05D000169 ORTHO05D004780 6.2e-49 198.4 366 37.2
Glyma.08G204300 Glycine max HOM05D000169 ORTHO05D004780 6.2e-49 198.4 141 66.7
Os01g0761300 Oryza sativa ssp. japonica HOM05D000169 ORTHO05D004780 6.2e-49 198.4 137 69.3
Phvul.010G148300 Phaseolus vulgaris HOM05D000169 ORTHO05D004780 6.2e-49 198.4 374 35.3
HPP92_024579 Vanilla planifolia HOM05D000169 ORTHO05D004780 6.2e-49 198.4 316 39.9
Gorai.011G073700 Gossypium raimondii HOM05D000169 ORTHO05D004780 8.1e-49 198.0 137 68.6
BraA05t22158Z Brassica rapa HOM05D000169 ORTHO05D004780 1.1e-48 197.6 366 36.6
Aa31LG8G3300 Aethionema arabicum HOM05D000169 ORTHO05D004780 1.4e-48 197.2 361 36.3
FvH4_6g31860 Fragaria vesca HOM05D000169 ORTHO05D004780 1.4e-48 197.2 137 67.9
Glyma.07G019100 Glycine max HOM05D000169 ORTHO05D004780 1.4e-48 197.2 138 67.4
Gohir.A10G081900 Gossypium hirsutum HOM05D000169 ORTHO05D004780 1.4e-48 197.2 366 36.3
AL3G28850 Arabidopsis lyrata HOM05D000169 ORTHO05D004780 1.8e-48 196.8 365 36.2
CAN.G438.32 Capsicum annuum HOM05D000169 ORTHO05D004780 1.8e-48 196.8 128 71.9
MSTRG.11049 Avicennia marina HOM05D000169 ORTHO05D004780 2.4e-48 196.4 137 69.3
AUR62016505 Chenopodium quinoa HOM05D000169 ORTHO05D004780 3.1e-48 196.1 371 35.6
A05p33330 Brassica napus HOM05D000169 ORTHO05D004780 5.2e-48 195.3 366 36.3
ClCG10G006410 Citrullus lanatus HOM05D000169 ORTHO05D004780 5.2e-48 195.3 363 35.8
C05p50330 Brassica napus HOM05D000169 ORTHO05D004780 6.8e-48 194.9 366 36.1
HanXRQChr16g0501121 Helianthus annuus HOM05D000169 ORTHO05D004780 6.8e-48 194.9 129 73.6
THA.LOC104817978 Tarenaya hassleriana HOM05D000169 ORTHO05D004780 6.8e-48 194.9 365 35.6
Zm00001eb152410 Zea mays HOM05D000169 ORTHO05D004780 6.8e-48 194.9 137 66.4
Sp3g14530 Schrenkiella parvula HOM05D000169 ORTHO05D004780 8.9e-48 194.5 365 35.9
Nitab4.5_0001968g0110 Nicotiana tabacum HOM05D000169 ORTHO05D004780 1.2e-47 194.1 127 73.2
MD17G1190300 Malus domestica HOM05D000169 ORTHO05D004780 1.5e-47 193.7 377 34.2
Duzib160G0343 Durio zibethinus HOM05D000169 ORTHO05D004780 2.0e-47 193.4 137 66.4
Pp3c19_10110 Physcomitrium patens HOM05D000169 ORTHO05D004780 2.6e-47 193.0 140 67.9
TAR624G0382 Trochodendron aralioides HOM05D000169 ORTHO05D004780 2.6e-47 193.0 124 75.0
Sed0000326 Sechium edule HOM05D000169 ORTHO05D004780 3.4e-47 192.6 367 34.9
Thhalv10020466m.g Eutrema salsugineum HOM05D000169 ORTHO05D004780 4.4e-47 192.2 365 36.2
unitig_748.g7432 Utricularia gibba HOM05D000169 ORTHO05D004780 4.4e-47 192.2 127 71.7
BolC5t33782H Brassica oleracea HOM05D000169 ORTHO05D004780 1.3e-46 190.7 381 34.9
Solyc12g044300.2 Solanum lycopersicum HOM05D000169 ORTHO05D004780 1.7e-46 190.3 127 70.9
CsaV3_3G005880 Cucumis sativus L. HOM05D000169 ORTHO05D004780 2.2e-46 189.9 138 66.7
MELO3C016565.2 Cucumis melo HOM05D000169 ORTHO05D004780 4.9e-46 188.7 375 34.7
CAN.G144.4 Capsicum annuum HOM05D000169 ORTHO05D004780 8.4e-46 188.0 127 70.9
RcHm_v2.0_Chr2g0139181 Rosa chinensis HOM05D000169 ORTHO05D004780 1.1e-45 187.6 124 71.0
PGSC0003DMG400026465 Solanum tuberosum HOM05D000169 ORTHO05D004780 1.1e-45 187.6 367 35.1
TPR.G27504 Trifolium pratense HOM05D000169 ORTHO05D004780 1.1e-45 187.6 391 35.0
A01p37930 Brassica napus HOM05D000169 ORTHO05D004780 7.1e-45 184.9 137 65.0
BolC1t04779H Brassica oleracea HOM05D000169 ORTHO05D004780 7.1e-45 184.9 137 65.0
Mapoly0036s0029 Marchantia polymorpha HOM05D000169 ORTHO05D004780 1.2e-44 184.1 140 62.1
BraA01t03853Z Brassica rapa HOM05D000169 ORTHO05D004780 1.6e-44 183.7 137 65.0
C01p48140 Brassica napus HOM05D000169 ORTHO05D004780 2.1e-44 183.3 137 65.0
SEGI_23005 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 4.6e-44 182.2 137 64.2
MD09G1208800 Malus domestica HOM05D000169 ORTHO05D004780 7.8e-44 181.4 127 66.9
Oeu033511.1 Olea europaea HOM05D000169 ORTHO05D004780 7.8e-44 181.4 381 35.2
ATR0315G090 Amborella trichopoda HOM05D000169 ORTHO05D004780 2.3e-43 179.9 103 89.3
CARHR091330 Cardamine hirsuta HOM05D000169 ORTHO05D004780 3.0e-43 179.5 127 68.5
Carub.0003s1591 Capsella rubella HOM05D000169 ORTHO05D004780 6.6e-43 178.3 137 65.0
Psat3g156160 Pisum sativum HOM05D000169 ORTHO05D004780 6.6e-43 178.3 372 35.2
Peaxi162Scf00034g00413 Petunia axillaris HOM05D000169 ORTHO05D004780 8.7e-43 177.9 127 68.5
Nitab4.5_0002859g0130 Nicotiana tabacum HOM05D000169 ORTHO05D004780 1.5e-42 177.2 127 68.5
Peaxi162Scf00015g00126 Petunia axillaris HOM05D000169 ORTHO05D004780 4.3e-42 175.6 120 70.0
Mapoly0003s0295 Marchantia polymorpha HOM05D000169 ORTHO05D004780 2.1e-41 173.3 140 55.7
SMO203G0257 Selaginella moellendorffii HOM05D000169 ORTHO05D004780 8.1e-41 171.4 136 60.3
Oeu000461.2 Olea europaea HOM05D000169 ORTHO05D004780 1.2e-39 167.5 368 35.6
Pp3c1_9430 Physcomitrium patens HOM05D000169 ORTHO05D004780 1.3e-38 164.1 139 56.8
arahy.Tifrunner.gnm1.ann1.4P55VP Arachis hypogaea HOM05D000169 ORTHO05D004780 2.4e-37 159.8 111 67.6
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 2.3e-35 153.3 212 42.5
Psat2g140280 Pisum sativum HOM05D005005 ORTHO05D006178 1.5e-34 150.6 212 42.0
Psat7g158200 Pisum sativum HOM05D005005 ORTHO05D006178 4.8e-33 145.6 102 66.7
Psat2g015720 Pisum sativum HOM05D000169 ORTHO05D004780 2.4e-32 143.3 301 34.6
Cpa.g.sc324.3 Carica papaya HOM05D000169 ORTHO05D004780 4.0e-32 142.5 87 74.7
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 4.0e-32 142.5 293 33.8
Psat2g140320 Pisum sativum HOM05D005005 ORTHO05D004780 3.4e-31 139.4 102 65.7
PRCOL_00000351 Prasinoderma coloniale HOM05D000169 ORTHO05D004780 3.4e-31 139.4 131 55.0
CBR_g3023 Chara braunii HOM05D000169 ORTHO05D004780 4.5e-31 139.0 140 50.0
Sopen12g022540 Solanum pennellii HOM05D000169 ORTHO05D004780 3.2e-29 132.9 87 71.3
COL.COLO4_30443 Corchorus olitorius HOM05D000169 ORTHO05D004780 3.7e-25 119.4 76 73.7
Psat1g148040 Pisum sativum HOM05D005005 ORTHO05D006178 2.2e-22 110.2 184 39.7
MCO15G682 Micromonas commoda HOM05D000169 ORTHO05D004780 1.4e-21 107.5 138 44.9
Cpa.g.sc379.1 Carica papaya HOM05D000169 ORTHO05D004780 3.5e-20 102.8 127 45.7
Psat4g178600 Pisum sativum HOM05D002964 ORTHO05D003498 5.6e-18 95.5 87 55.2
Psat5g199840 Pisum sativum HOM05D000518 ORTHO05D000737 6.2e-17 92.0 57 75.4
ATR0315G057 Amborella trichopoda HOM05D000169 ORTHO05D004780 4.0e-16 89.4 111 43.2
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 3.4e-15 86.3 91 51.6
Cre13.g586000 Chlamydomonas reinhardtii HOM05D000169 ORTHO05D004780 2.9e-14 83.2 238 30.3
COL.COLO4_30442 Corchorus olitorius HOM05D000169 ORTHO05D004780 6.5e-14 82.0 91 45.1
Lalb_Chr25g0280011 Lupinus albus HOM05D000169 ORTHO05D004780 6.5e-14 82.0 91 52.7
Psat5g199760 Pisum sativum HOM05D000518 ORTHO05D000737 1.2e-12 77.8 48 75.0
QL05p021511 Quercus lobata HOM05D000169 ORTHO05D004780 1.6e-12 77.4 102 44.1
TAR624G1376 Trochodendron aralioides HOM05D000169 ORTHO05D004780 2.1e-12 77.0 101 43.6
BcaB06g25712 Brassica carinata HOM05D000169 ORTHO05D004780 3.5e-12 76.3 91 48.4
CsaV3_3G005890 Cucumis sativus L. HOM05D000169 ORTHO05D004780 3.5e-12 76.3 91 46.2
RcHm_v2.0_Chr2g0139171 Rosa chinensis HOM05D000169 ORTHO05D004780 4.6e-12 75.9 100 46.0
Psat5g204480 Pisum sativum HOM05D000518 ORTHO05D000737 6.0e-12 75.5 48 72.9
SHI18051 Sapria himalayana HOM05D000169 ORTHO05D004780 3.0e-11 73.2 91 42.9
Cc04_g02960 Coffea canephora HOM05D000169 ORTHO05D004780 6.7e-11 72.0 91 44.0
HPP92_024637 Vanilla planifolia HOM05D000169 ORTHO05D004780 2.8e-09 66.6 71 49.3
SEGI_02233 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 8.2e-09 65.1 122 34.4
Solyc12g044290.2 Solanum lycopersicum HOM05D000169 ORTHO05D004780 1.4e-08 64.3 93 41.9
SGA_v2.0_scaffold5G02549 Striga asiatica HOM05D000169 ORTHO05D004780 3.1e-08 63.2 91 40.7
Pp3s155_30 Physcomitrium patens HOM05D000169 ORTHO05D001214 2.6e-07 60.1 103 35.0
Psat2g140360 Pisum sativum HOM05D000324 ORTHO05D021082 6.5e-06 55.5 32 71.9


User provided reference genes

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