Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1936.8 977 100.0
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1391.3 983 70.6
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1390.6 987 68.9
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1390.6 982 69.6
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1375.5 985 68.7
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1367.4 987 67.3
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1360.1 987 67.1
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1357.4 980 67.0
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1355.1 980 68.2
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1353.2 981 67.4
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1347.0 987 66.0
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1342.0 977 66.8
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1341.6 985 67.4
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1336.6 955 66.9
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1334.7 984 66.7
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1333.2 984 66.3
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1331.6 982 66.6
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1328.5 979 66.6
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1326.2 987 65.3
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1323.1 980 66.3
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1320.1 984 65.8
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1318.1 987 65.3
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1317.4 982 66.3
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1315.4 986 65.4
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1315.1 978 65.5
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1314.7 984 65.7
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1314.3 980 64.3
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1313.9 987 64.9
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1307.4 980 64.6
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1305.8 980 64.9
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1305.4 980 65.4
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1304.7 981 64.4
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1303.9 985 65.0
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1303.9 982 65.0
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1303.5 982 64.9
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1303.1 982 64.6
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1303.1 979 64.6
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1302.7 986 64.5
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1302.3 980 65.3
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1301.2 985 64.8
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1300.8 981 65.0
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1300.0 985 64.4
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1300.0 987 63.6
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1298.9 984 64.8
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1298.5 981 64.2
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1298.1 981 64.8
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1297.3 981 64.2
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1296.2 980 66.3
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1295.0 988 64.5
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1294.3 980 64.2
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1293.5 985 64.6
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1291.9 985 64.4
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1289.6 980 64.6
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1288.5 987 64.7
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1288.5 1010 62.5
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1288.1 987 64.6
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1285.4 987 63.3
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1283.9 986 64.3
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1283.1 983 64.6
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1283.1 987 63.6
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1282.3 980 63.3
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1281.2 983 64.5
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1278.1 986 63.0
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1276.5 980 62.6
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1275.8 987 63.2
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1271.9 987 62.8
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1271.5 980 61.5
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1271.5 987 63.0
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1268.8 983 64.3
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1268.4 980 63.2
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1265.8 979 63.8
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1265.4 979 62.5
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1265.0 956 63.5
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1263.8 979 62.7
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1261.5 980 62.7
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1261.5 987 62.5
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1261.1 980 62.4
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1260.0 981 63.2
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1259.2 987 62.5
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1258.4 978 62.5
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1258.0 981 62.0
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1257.7 988 62.4
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1255.7 981 61.8
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1254.6 988 62.3
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1254.6 984 61.9
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1254.6 965 63.0
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1253.8 1006 62.0
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1253.4 980 62.1
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1251.1 1075 58.1
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1250.3 980 62.1
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1248.8 980 61.5
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1248.4 984 61.2
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1247.3 1007 61.3
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1246.1 994 61.5
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1246.1 980 61.9
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1245.7 987 61.0
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1245.7 980 60.9
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1245.0 981 60.6
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1244.2 983 60.8
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1241.1 980 60.7
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1238.4 1017 59.4
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1237.2 985 59.9
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1236.9 975 63.4
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1236.1 1014 60.7
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1235.7 1082 57.7
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1219.5 975 63.1
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1219.1 980 61.4
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1216.4 899 66.2
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1216.1 954 61.6
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1214.5 980 61.2
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1206.0 980 60.5
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1198.3 999 59.7
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1184.5 965 59.7
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1174.1 980 59.7
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1173.3 984 59.2
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1162.5 980 59.5
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1157.1 969 57.9
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1142.1 984 58.0
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1125.5 1010 56.9
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1125.5 893 61.0
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1117.4 839 64.8
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1087.0 952 57.9
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.5e-309 1066.2 839 60.9
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 1.9e-301 1039.3 871 57.6
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 8.7e-294 1013.8 984 53.3
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 1.1e-291 1006.9 997 51.8
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 3.0e-286 988.8 810 60.1
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 4.3e-253 878.6 944 48.3
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 4.2e-240 835.5 660 62.7
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.7e-239 832.8 541 73.0
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.4e-221 772.7 685 54.9
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 1.4e-214 750.7 886 45.3
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 2.0e-210 736.9 659 55.7
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 7.8e-202 708.4 528 66.1
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 8.1e-167 592.0 362 78.2
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.0e-165 587.4 809 43.4
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 1.5e-160 571.2 910 39.0
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 2.1e-138 497.7 296 80.7
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 9.7e-136 488.8 296 78.7
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-129 468.8 861 35.4
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.2e-127 461.1 282 79.1
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.2e-124 451.1 415 55.4
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 2.6e-120 437.6 1050 30.6
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 5.4e-110 403.3 1013 31.0
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 4.0e-105 387.1 257 73.9
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.8e-97 361.7 319 58.0
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 1.6e-85 322.0 667 34.6
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 2.8e-82 311.2 428 40.9
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 1.5e-75 288.9 360 40.6
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 6.6e-68 263.5 320 42.8
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 1.9e-67 261.9 356 42.7
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.2e-64 252.7 257 51.8
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 1.1e-57 229.6 147 81.0
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.6e-53 215.7 253 46.2
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 2.1e-53 215.3 185 55.7
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 7.9e-53 213.4 129 79.8
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 1.1e-51 209.5 125 81.6
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 1.1e-46 193.0 125 77.6
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 1.6e-45 189.1 140 62.9
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 3.0e-44 184.9 1031 22.8
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 3.1e-41 174.9 105 76.2
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 5.5e-38 164.1 200 51.0
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 3.5e-37 161.4 105 70.5
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 7.9e-37 160.2 105 70.5
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 1.0e-36 159.8 101 73.3
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 1.1e-27 129.8 85 72.9
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 7.9e-21 107.1 149 47.7
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 1.8e-20 105.9 121 53.7
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 1.7e-18 99.4 63 76.2
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 2.2e-18 99.0 82 54.9
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 5.3e-17 94.4 82 52.4
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 2.6e-16 92.0 62 69.4
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 3.4e-16 91.7 137 40.9
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 4.5e-16 91.3 67 65.7
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 5.0e-15 87.8 65 63.1
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.1e-14 86.7 60 66.7
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 1.4e-14 86.3 122 39.3
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 7.2e-14 84.0 53 69.8
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 2.1e-13 82.4 169 33.1
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.0e-12 80.1 60 61.7
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.3e-12 79.0 60 61.7
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 3.0e-12 78.6 47 74.5
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 9.4e-06 57.0 37 73.0


User provided reference genes

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