Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0315G057 Amborella trichopoda HOM05D000169 ORTHO05D004780 7.0e-156 553.9 279 100.0
MBI01_g30862_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D004780 1.1e-63 247.7 236 57.2
TAR624G1376 Trochodendron aralioides HOM05D000169 ORTHO05D004780 1.4e-58 230.7 235 52.8
Aqoxy7G01575 Aquilegia oxysepala HOM05D000169 ORTHO05D004780 1.5e-57 227.3 207 58.0
Actinidia21686 Actinidia chinensis HOM05D000169 ORTHO05D004780 4.8e-56 222.2 251 50.2
TAR636G0874 Trochodendron aralioides HOM05D000169 ORTHO05D004780 1.1e-55 221.1 219 53.0
Prupe.3G065200 Prunus persica HOM05D000169 ORTHO05D004780 1.8e-55 220.3 236 52.5
vmacro18881 Vaccinium macrocarpon HOM05D000169 ORTHO05D004780 2.4e-55 219.9 212 56.1
EL10Ac9g22056 Beta vulgaris HOM05D000169 ORTHO05D004780 1.6e-54 217.2 244 51.6
Nn2g11670 Nelumbo nucifera HOM05D000169 ORTHO05D004780 1.6e-54 217.2 221 57.9
Atru.chr1.3409_Atru.chr1.3410 Acer truncatum HOM05D000169 ORTHO05D004780 3.5e-54 216.1 225 52.4
CSS0039624 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D004780 5.9e-54 215.3 209 54.1
ClCG10G006410 Citrullus lanatus HOM05D000169 ORTHO05D004780 5.9e-54 215.3 223 53.4
Haze_16349 Corylus avellana HOM05D000169 ORTHO05D004780 7.7e-54 214.9 242 51.2
MELO3C016565.2 Cucumis melo HOM05D000169 ORTHO05D004780 1.3e-53 214.2 224 52.7
Potri.001G185500 Populus trichocarpa HOM05D000169 ORTHO05D004780 2.2e-53 213.4 206 55.3
CiPaw.02G148300 Carya illinoinensis HOM05D000169 ORTHO05D004780 3.8e-53 212.6 234 52.1
PSO566G0043 Papaver somniferum HOM05D000169 ORTHO05D004780 6.5e-53 211.8 269 46.8
PSO782G1073 Papaver somniferum HOM05D000169 ORTHO05D004780 6.5e-53 211.8 268 47.0
Sed0000326 Sechium edule HOM05D000169 ORTHO05D004780 1.9e-52 210.3 223 50.2
FvH4_6g31860 Fragaria vesca HOM05D000169 ORTHO05D004780 2.5e-52 209.9 239 50.6
FAN14G0873 Fragaria x ananassa HOM05D000169 ORTHO05D004780 2.5e-52 209.9 239 50.6
RcHm_v2.0_Chr2g0139171 Rosa chinensis HOM05D000169 ORTHO05D004780 2.5e-52 209.9 235 50.2
AUR62011680 Chenopodium quinoa HOM05D000169 ORTHO05D004780 4.2e-52 209.1 257 49.4
Duzib160G0343 Durio zibethinus HOM05D000169 ORTHO05D004780 5.5e-52 208.8 236 52.5
Sabra01G0154600 Salix brachista HOM05D000169 ORTHO05D004780 5.5e-52 208.8 252 47.6
CiPaw.01G235100 Carya illinoinensis HOM05D000169 ORTHO05D004780 7.2e-52 208.4 221 52.0
FAN05G1415 Fragaria x ananassa HOM05D000169 ORTHO05D004780 7.2e-52 208.4 239 50.6
Manes.11G037400 Manihot esculenta HOM05D000169 ORTHO05D004780 1.2e-51 207.6 206 54.4
Zm00001eb152410 Zea mays HOM05D000169 ORTHO05D004780 1.2e-51 207.6 235 48.1
Psat7g253800 Pisum sativum HOM05D000169 ORTHO05D004780 2.1e-51 206.8 235 50.2
Thecc.06G093200 Theobroma cacao HOM05D000169 ORTHO05D004780 2.1e-51 206.8 233 51.5
CANSAT56G0566 Cannabis sativa HOM05D000169 ORTHO05D004780 3.6e-51 206.1 249 48.6
Cfa002101 Carpinus fangiana HOM05D000169 ORTHO05D004780 3.6e-51 206.1 240 49.6
Eucgr.J02955 Eucalyptus grandis HOM05D000169 ORTHO05D004780 6.1e-51 205.3 231 51.9
TWI12G1479 Tripterygium wilfordii HOM05D000169 ORTHO05D004780 6.1e-51 205.3 244 51.2
CDE05G2910 Ceratophyllum demersum HOM05D000169 ORTHO05D004780 8.0e-51 204.9 222 50.0
QL05p021511 Quercus lobata HOM05D000169 ORTHO05D004780 8.0e-51 204.9 248 48.4
HPP92_024579 Vanilla planifolia HOM05D000169 ORTHO05D004780 1.0e-50 204.5 227 48.5
GSVIVG01017056001 Vitis vinifera HOM05D000169 ORTHO05D004780 1.0e-50 204.5 211 54.5
COL.COLO4_30442 Corchorus olitorius HOM05D000169 ORTHO05D004780 1.4e-50 204.1 208 55.3
TWI75G0003 Tripterygium wilfordii HOM05D000169 ORTHO05D004780 1.8e-50 203.8 229 52.8
DCAR_026335 Daucus carota HOM05D000169 ORTHO05D004780 2.3e-50 203.4 209 55.5
MD17G1190300 Malus domestica HOM05D000169 ORTHO05D004780 2.3e-50 203.4 200 56.5
Medtr4g011790 Medicago truncatula HOM05D000169 ORTHO05D004780 3.0e-50 203.0 217 52.5
SalBow2G1665 Salvia bowleyana HOM05D000169 ORTHO05D004780 4.0e-50 202.6 247 48.6
HanXRQChr16g0500801 Helianthus annuus HOM05D000169 ORTHO05D004780 5.2e-50 202.2 208 52.4
Hma1.2p1_1195F.1_g265900 Hydrangea macrophylla HOM05D000169 ORTHO05D004780 5.2e-50 202.2 208 52.4
CAN.G438.32 Capsicum annuum HOM05D000169 ORTHO05D004780 1.2e-49 201.1 210 53.3
AUR62016505 Chenopodium quinoa HOM05D000169 ORTHO05D004780 1.2e-49 201.1 219 52.5
Nitab4.5_0011683g0010 Nicotiana tabacum HOM05D000169 ORTHO05D004780 1.5e-49 200.7 216 52.8
Cc04_g02960 Coffea canephora HOM05D000169 ORTHO05D004780 2.0e-49 200.3 215 52.6
Gohir.A10G081900 Gossypium hirsutum HOM05D000169 ORTHO05D004780 3.4e-49 199.5 229 52.0
Peaxi162Scf00034g00413 Petunia axillaris HOM05D000169 ORTHO05D004780 3.4e-49 199.5 221 50.7
PGSC0003DMG400026465 Solanum tuberosum HOM05D000169 ORTHO05D004780 4.4e-49 199.1 206 51.0
Nitab4.5_0001968g0110 Nicotiana tabacum HOM05D000169 ORTHO05D004780 7.5e-49 198.4 216 50.0
Nitab4.5_0002859g0130 Nicotiana tabacum HOM05D000169 ORTHO05D004780 9.8e-49 198.0 206 52.9
Carub.0003s1591 Capsella rubella HOM05D000169 ORTHO05D004780 1.3e-48 197.6 219 52.5
Lalb_Chr25g0280011 Lupinus albus HOM05D000169 ORTHO05D004780 1.3e-48 197.6 221 52.0
Nitab4.5_0001315g0060 Nicotiana tabacum HOM05D000169 ORTHO05D004780 1.3e-48 197.6 216 52.3
MD09G1208800 Malus domestica HOM05D000169 ORTHO05D004780 2.2e-48 196.8 253 46.6
TPR.G27504 Trifolium pratense HOM05D000169 ORTHO05D004780 2.2e-48 196.8 225 51.6
Ah.01g021720 Amaranthus hybridus HOM05D000169 ORTHO05D004780 3.7e-48 196.1 240 49.2
ECA232G3766 Erigeron canadensis HOM05D000169 ORTHO05D004780 3.7e-48 196.1 218 51.4
Migut.I00934 Erythranthe guttata HOM05D000169 ORTHO05D004780 6.3e-48 195.3 240 48.3
Lj3g0027736 Lotus japonicus HOM05D000169 ORTHO05D004780 8.3e-48 194.9 234 48.7
Solyc12g044290.2 Solanum lycopersicum HOM05D000169 ORTHO05D004780 8.3e-48 194.9 241 46.1
AT3G16170 Arabidopsis thaliana HOM05D000169 ORTHO05D004780 1.1e-47 194.5 224 50.9
Gohir.D10G069600 Gossypium hirsutum HOM05D000169 ORTHO05D004780 1.1e-47 194.5 229 52.0
Gorai.011G073700 Gossypium raimondii HOM05D000169 ORTHO05D004780 1.1e-47 194.5 229 52.0
Medtr4g013210 Medicago truncatula HOM05D000169 ORTHO05D004780 1.4e-47 194.1 251 45.8
TPR.G38605 Trifolium pratense HOM05D000169 ORTHO05D004780 1.4e-47 194.1 225 50.2
arahy.Tifrunner.gnm1.ann1.5X7XAP Arachis hypogaea HOM05D000169 ORTHO05D004780 1.8e-47 193.7 241 48.5
AL3G28850 Arabidopsis lyrata HOM05D000169 ORTHO05D004780 3.1e-47 193.0 219 51.6
Thhalv10020466m.g Eutrema salsugineum HOM05D000169 ORTHO05D004780 3.1e-47 193.0 209 52.6
Aa31LG8G3300 Aethionema arabicum HOM05D000169 ORTHO05D004780 4.1e-47 192.6 209 51.7
arahy.Tifrunner.gnm1.ann1.4P55VP Arachis hypogaea HOM05D000169 ORTHO05D004780 5.4e-47 192.2 241 48.1
Sp3g14530 Schrenkiella parvula HOM05D000169 ORTHO05D004780 5.4e-47 192.2 223 52.0
Psat3g156160 Pisum sativum HOM05D000169 ORTHO05D004780 7.0e-47 191.8 218 50.5
MSTRG.11049 Avicennia marina HOM05D000169 ORTHO05D004780 9.1e-47 191.4 211 51.2
Ciclev10025185m.g Citrus clementina HOM05D000169 ORTHO05D004780 9.1e-47 191.4 227 48.5
Sc15g0002130 Simmondsia chinensis HOM05D000169 ORTHO05D004780 9.1e-47 191.4 232 48.7
Oeu000461.2 Olea europaea HOM05D000169 ORTHO05D004780 1.2e-46 191.0 206 52.4
THA.LOC104817978 Tarenaya hassleriana HOM05D000169 ORTHO05D004780 1.2e-46 191.0 219 50.7
Psat7g253640 Pisum sativum HOM05D000169 ORTHO05D004780 2.0e-46 190.3 229 49.8
unitig_748.g7432 Utricularia gibba HOM05D000169 ORTHO05D004780 2.0e-46 190.3 212 52.8
Phvul.010G148300 Phaseolus vulgaris HOM05D000169 ORTHO05D004780 3.5e-46 189.5 227 47.6
BcaB06g25712 Brassica carinata HOM05D000169 ORTHO05D004780 4.5e-46 189.1 223 50.2
A01p37930 Brassica napus HOM05D000169 ORTHO05D004780 4.5e-46 189.1 209 51.7
A05p33330 Brassica napus HOM05D000169 ORTHO05D004780 7.7e-46 188.3 220 50.9
SGA_v2.0_scaffold5G02549 Striga asiatica HOM05D000169 ORTHO05D004780 7.7e-46 188.3 221 48.9
CARHR091330 Cardamine hirsuta HOM05D000169 ORTHO05D004780 1.0e-45 188.0 226 50.0
Ca_20416_v3 Cicer arietinum L. HOM05D000169 ORTHO05D004780 1.0e-45 188.0 201 51.2
Ca_20370_v3 Cicer arietinum L. HOM05D000169 ORTHO05D004780 1.3e-45 187.6 201 49.3
Lj5A57T75 Lonicera japonica HOM05D000169 ORTHO05D004780 1.3e-45 187.6 164 59.8
Glyma.07G019100 Glycine max HOM05D000169 ORTHO05D004780 3.8e-45 186.0 236 47.9
BraA05t22158Z Brassica rapa HOM05D000169 ORTHO05D004780 5.0e-45 185.7 223 51.1
Glyma.08G204300 Glycine max HOM05D000169 ORTHO05D004780 5.0e-45 185.7 229 48.0
VMungo0331G1448 Vigna mungo HOM05D000169 ORTHO05D004780 5.0e-45 185.7 209 48.3
C05p50330 Brassica napus HOM05D000169 ORTHO05D004780 8.6e-45 184.9 229 48.9
BraA01t03853Z Brassica rapa HOM05D000169 ORTHO05D004780 1.5e-44 184.1 209 50.2
BolC5t33782H Brassica oleracea HOM05D000169 ORTHO05D004780 3.2e-44 183.0 225 49.3
Hund06638 Selenicereus undatus HOM05D000169 ORTHO05D004780 7.2e-44 181.8 210 53.8
Lsat_1_v5_gn_4_103101 Lactuca sativa HOM05D000169 ORTHO05D004780 1.2e-43 181.0 204 51.5
BolC1t04779H Brassica oleracea HOM05D000169 ORTHO05D004780 2.1e-43 180.3 209 50.2
Oeu033511.1 Olea europaea HOM05D000169 ORTHO05D004780 2.8e-40 169.9 206 48.1
Cpa.g.sc296.4 Carica papaya HOM05D000169 ORTHO05D004780 6.3e-40 168.7 147 62.6
SEGI_23005 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 6.3e-40 168.7 243 40.7
SMO203G0257 Selaginella moellendorffii HOM05D000169 ORTHO05D004780 1.4e-39 167.5 218 43.6
CsaV3_3G005890 Cucumis sativus L. HOM05D000169 ORTHO05D004780 4.1e-39 166.0 158 54.4
CAN.G144.5 Capsicum annuum HOM05D000169 ORTHO05D004780 9.2e-39 164.9 161 54.7
Pp3c19_10110 Physcomitrium patens HOM05D000169 ORTHO05D004780 5.0e-37 159.1 233 41.6
Pp3c1_9430 Physcomitrium patens HOM05D000169 ORTHO05D004780 8.6e-37 158.3 274 35.8
TPR.G5245 Trifolium pratense HOM05D000169 ORTHO05D004780 4.3e-36 156.0 174 48.9
Peaxi162Scf00015g00126 Petunia axillaris HOM05D000169 ORTHO05D004780 5.6e-36 155.6 153 58.2
Mapoly0036s0029 Marchantia polymorpha HOM05D000169 ORTHO05D004780 1.6e-35 154.1 242 39.7
Cpa.g.c28291.1 Carica papaya HOM05D000169 ORTHO05D004780 3.6e-35 152.9 148 57.4
Mapoly0003s0295 Marchantia polymorpha HOM05D000169 ORTHO05D004780 6.4e-32 142.1 208 42.3
Nitab4.5_0003054g0020 Nicotiana tabacum HOM05D000169 ORTHO05D004780 1.9e-28 130.6 152 52.6
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 5.6e-28 129.0 152 48.7
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 1.6e-27 127.5 119 57.1
Psat2g140320 Pisum sativum HOM05D005005 ORTHO05D004780 2.1e-27 127.1 134 51.5
C01p48140 Brassica napus HOM05D000169 ORTHO05D004780 5.4e-23 112.5 221 37.1
SEGI_02233 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 2.0e-22 110.5 160 38.8
PRCOL_00000351 Prasinoderma coloniale HOM05D000169 ORTHO05D004780 2.7e-22 110.2 177 37.9
CBR_g3023 Chara braunii HOM05D000169 ORTHO05D004780 3.9e-21 106.3 212 33.5
SHI18051 Sapria himalayana HOM05D000169 ORTHO05D004780 5.0e-21 105.9 114 48.2
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 6.6e-21 105.5 76 64.5
Psat1g148040 Pisum sativum HOM05D005005 ORTHO05D006178 1.2e-19 101.3 81 63.0
CBR_g41790 Chara braunii HOM05D002985 ORTHO05D003335 6.2e-19 99.0 196 35.2
Psat2g140280 Pisum sativum HOM05D005005 ORTHO05D006178 2.3e-18 97.1 63 74.6
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 7.5e-17 92.0 63 69.8
Dinv30473 Davidia involucrata HOM05D000169 ORTHO05D004780 1.3e-16 91.3 95 51.6
MCO15G682 Micromonas commoda HOM05D000169 ORTHO05D004780 2.9e-16 90.1 184 35.3
ATR0315G090 Amborella trichopoda HOM05D000169 ORTHO05D004780 4.9e-16 89.4 127 42.5
ATR0315G109 Amborella trichopoda HOM05D000169 ORTHO05D004780 8.3e-16 88.6 111 43.2
Lsat_1_v5_gn_9_96380 Lactuca sativa HOM05D012938 ORTHO05D004780 1.1e-15 88.2 109 46.8
BcaB07g30448 Brassica carinata HOM05D000169 ORTHO05D004780 5.4e-15 85.9 80 60.0
BcaB07g30450 Brassica carinata HOM05D000169 ORTHO05D004780 3.5e-14 83.2 51 78.4
Psat2g015720 Pisum sativum HOM05D000169 ORTHO05D004780 6.6e-13 79.0 235 30.2
Cre13.g586000 Chlamydomonas reinhardtii HOM05D000169 ORTHO05D004780 1.5e-12 77.8 182 31.3
SHI18050 Sapria himalayana HOM05D000169 ORTHO05D004780 1.5e-12 77.8 123 39.8
Lsat_1_v5_gn_3_30240 Lactuca sativa HOM05D000169 ORTHO05D004780 1.9e-12 77.4 47 76.6
SEGI_14736 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 1.4e-10 71.2 179 29.1
BcaB07g30452 Brassica carinata HOM05D000169 ORTHO05D004780 5.2e-10 69.3 79 53.2
AUR62014993 Chenopodium quinoa HOM05D000324 ORTHO05D002625 1.3e-08 64.7 177 27.7
AUR62029128 Chenopodium quinoa HOM05D000324 ORTHO05D002625 1.3e-08 64.7 177 27.7
Nitab4.5_0001227g0010 Nicotiana tabacum HOM05D000169 ORTHO05D004780 1.7e-08 64.3 105 42.9
EL10Ac9g22660 Beta vulgaris HOM05D000324 ORTHO05D002625 3.8e-08 63.2 182 28.6
Psat7g158200 Pisum sativum HOM05D005005 ORTHO05D006178 3.8e-08 63.2 76 46.1
Psat0s3793g0040 Pisum sativum HOM05D001826 ORTHO05D007448 4.9e-08 62.8 56 58.9
MSTRG.25385 Avicennia marina HOM05D000324 ORTHO05D002625 6.4e-08 62.4 181 27.1
Phvul.006G005500 Phaseolus vulgaris HOM05D000324 ORTHO05D002625 6.4e-08 62.4 175 26.9
Ah.01g002490 Amaranthus hybridus HOM05D000324 ORTHO05D002625 2.4e-07 60.5 182 28.0
MD09G1129700 Malus domestica HOM05D000324 ORTHO05D002625 3.2e-07 60.1 177 27.7
MD17G1118500 Malus domestica HOM05D000324 ORTHO05D002625 4.1e-07 59.7 176 26.1
MSTRG.1443 Avicennia marina HOM05D000324 ORTHO05D002625 5.4e-07 59.3 177 27.7
Migut.C01124 Erythranthe guttata HOM05D000324 ORTHO05D002625 7.1e-07 58.9 183 26.8
Glyma.13G010100 Glycine max HOM05D000324 ORTHO05D002625 7.1e-07 58.9 177 26.6
MCO03G569 Micromonas commoda HOM05D000804 ORTHO05D005389 7.1e-07 58.9 184 26.1
EL10Ac5g11564 Beta vulgaris HOM05D000169 ORTHO05D017178 1.2e-06 58.2 53 49.1
PSO170G2266 Papaver somniferum HOM05D000324 ORTHO05D002625 1.2e-06 58.2 181 26.0
Glyma.20G060100 Glycine max HOM05D000324 ORTHO05D002625 1.6e-06 57.8 177 26.6
MCO05G727 Micromonas commoda HOM05D000804 ORTHO05D005389 1.6e-06 57.8 207 26.6
PSO528G0028 Papaver somniferum HOM05D000324 ORTHO05D002625 2.1e-06 57.4 181 26.0
Sabra14G0129200 Salix brachista HOM05D000324 ORTHO05D002625 2.1e-06 57.4 181 27.1
VMungo0540G0787 Vigna mungo HOM05D000324 ORTHO05D002625 2.1e-06 57.4 176 26.7
Cc10_g11850 Coffea canephora HOM05D000324 ORTHO05D002625 2.7e-06 57.0 176 26.7
MD07G1077300 Malus domestica HOM05D000804 ORTHO05D005389 3.5e-06 56.6 176 28.4
Oeu040418.1 Olea europaea HOM05D000324 ORTHO05D002625 3.5e-06 56.6 181 25.4
Oeu026151.1 Olea europaea HOM05D000324 ORTHO05D002625 4.6e-06 56.2 177 25.4
RcHm_v2.0_Chr2g0155701 Rosa chinensis HOM05D000324 ORTHO05D002625 4.6e-06 56.2 176 26.1
SHI05444 Sapria himalayana HOM05D000324 ORTHO05D001014 4.6e-06 56.2 152 27.6
C08p23960 Brassica napus HOM05D000169 ORTHO05D004437 6.0e-06 55.8 148 28.4
CARHR142630 Cardamine hirsuta HOM05D000324 ORTHO05D001014 6.0e-06 55.8 178 25.8
CiPaw.06G138800 Carya illinoinensis HOM05D000324 ORTHO05D001014 6.0e-06 55.8 183 25.1
Dinv21314 Davidia involucrata HOM05D000324 ORTHO05D002625 6.0e-06 55.8 182 27.5
TWI75G0403 Tripterygium wilfordii HOM05D000324 ORTHO05D002625 6.0e-06 55.8 177 25.4
ATR0680G178 Amborella trichopoda HOM05D000169 ORTHO05D004437 7.8e-06 55.5 188 28.2
SGA_v2.0_scaffold24G10462 Striga asiatica HOM05D000324 ORTHO05D002625 7.8e-06 55.5 177 27.1


User provided reference genes

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