Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 1.4e-133 479.6 232 100.0
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 4.6e-60 235.3 129 87.6
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 1.7e-59 233.4 129 85.3
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 1.7e-59 233.4 129 84.5
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 1.7e-59 233.4 129 85.3
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 2.3e-59 233.0 129 86.0
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 3.0e-59 232.6 129 85.3
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 3.9e-59 232.3 129 84.5
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 5.1e-59 231.9 129 84.5
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 6.6e-59 231.5 129 84.5
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 8.7e-59 231.1 129 84.5
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 8.7e-59 231.1 129 83.7
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 8.7e-59 231.1 129 83.7
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.1e-58 230.7 129 82.9
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 1.5e-58 230.3 129 83.7
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 1.9e-58 229.9 129 83.7
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 1.9e-58 229.9 129 83.7
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 2.5e-58 229.6 129 82.9
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 2.5e-58 229.6 126 85.7
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 2.5e-58 229.6 129 84.5
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 3.3e-58 229.2 129 83.7
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 3.3e-58 229.2 129 84.5
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 3.3e-58 229.2 129 84.5
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 3.3e-58 229.2 129 82.9
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 3.3e-58 229.2 129 84.5
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 3.3e-58 229.2 129 83.7
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 4.3e-58 228.8 129 82.9
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 4.3e-58 228.8 129 82.9
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 4.3e-58 228.8 129 82.9
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 4.3e-58 228.8 129 82.9
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 4.3e-58 228.8 129 85.3
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 5.6e-58 228.4 129 83.7
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 5.6e-58 228.4 129 82.9
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 7.3e-58 228.0 129 83.7
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 7.3e-58 228.0 126 84.9
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 7.3e-58 228.0 129 82.9
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 7.3e-58 228.0 129 82.9
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 9.6e-58 227.6 126 84.9
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 9.6e-58 227.6 129 82.2
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 9.6e-58 227.6 129 82.2
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 9.6e-58 227.6 129 82.2
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 9.6e-58 227.6 129 83.7
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 9.6e-58 227.6 129 84.5
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 9.6e-58 227.6 129 82.9
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 1.2e-57 227.3 129 82.9
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 1.2e-57 227.3 129 82.2
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 1.2e-57 227.3 129 82.9
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 1.6e-57 226.9 126 84.9
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 1.6e-57 226.9 126 84.9
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 1.6e-57 226.9 127 83.5
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 1.6e-57 226.9 129 82.2
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.1e-57 226.5 129 80.6
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 2.1e-57 226.5 129 83.7
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 2.1e-57 226.5 129 81.4
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 2.8e-57 226.1 129 82.2
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.6e-57 225.7 129 82.2
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 3.6e-57 225.7 129 80.6
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.6e-57 225.7 129 80.6
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 3.6e-57 225.7 129 82.2
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 3.6e-57 225.7 129 81.4
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.6e-57 225.7 129 82.2
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 3.6e-57 225.7 129 81.4
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 3.6e-57 225.7 129 82.2
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 3.6e-57 225.7 129 82.2
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 4.7e-57 225.3 131 80.2
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 4.7e-57 225.3 129 82.2
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 4.7e-57 225.3 129 82.2
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 6.2e-57 224.9 129 82.2
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 6.2e-57 224.9 129 80.6
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 6.2e-57 224.9 129 82.2
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 8.1e-57 224.6 129 81.4
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 8.1e-57 224.6 129 79.8
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 1.1e-56 224.2 129 81.4
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.1e-56 224.2 129 82.2
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.8e-56 223.4 129 79.8
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 2.4e-56 223.0 127 81.9
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 6.9e-56 221.5 126 82.5
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 1.2e-55 220.7 121 85.1
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 1.5e-55 220.3 129 80.6
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 2.0e-55 219.9 135 76.3
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 2.6e-55 219.5 129 79.8
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 2.6e-55 219.5 129 79.8
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 3.4e-55 219.2 126 81.0
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 5.8e-55 218.4 129 79.1
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 1.3e-54 217.2 129 78.3
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 1.3e-54 217.2 137 77.4
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.7e-54 216.9 127 79.5
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 2.2e-54 216.5 135 74.8
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 2.2e-54 216.5 135 74.8
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 2.2e-54 216.5 129 78.3
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 2.2e-54 216.5 137 75.9
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 2.9e-54 216.1 139 76.3
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 4.9e-54 215.3 126 79.4
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 6.4e-54 214.9 129 78.3
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 1.9e-53 213.4 125 79.2
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 1.9e-53 213.4 125 79.2
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 2.4e-53 213.0 125 79.2
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 2.4e-53 213.0 125 79.2
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 3.2e-53 212.6 152 69.7
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 5.4e-53 211.8 126 77.0
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 5.4e-53 211.8 155 68.4
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.6e-52 210.3 135 74.8
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.6e-52 210.3 150 70.0
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 2.1e-52 209.9 127 76.4
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 3.5e-52 209.1 126 78.6
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 3.0e-51 206.1 135 73.3
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 3.0e-51 206.1 135 73.3
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 3.0e-51 206.1 135 73.3
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 3.0e-51 206.1 135 73.3
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 5.6e-50 201.8 193 56.0
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 4.8e-49 198.7 190 56.3
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 4.8e-49 198.7 129 70.5
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 4.0e-48 195.7 117 78.6
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 4.5e-47 192.2 131 71.8
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 9.9e-47 191.0 129 72.1
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 3.2e-45 186.0 135 65.9
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 7.1e-45 184.9 112 77.7
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 7.1e-45 184.9 129 65.9
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 9.3e-45 184.5 129 66.7
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 1.2e-44 184.1 129 62.8
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 3.7e-41 172.6 150 58.7
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 1.1e-40 171.0 88 89.8
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 3.4e-39 166.0 90 84.4
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 1.6e-33 147.1 114 64.0
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 6.3e-25 118.6 126 49.2
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 5.3e-24 115.5 68 82.4
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 6.9e-24 115.2 139 46.8
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.8e-22 109.4 68 76.5
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.2e-21 106.3 68 73.5
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 4.2e-21 105.9 64 76.6
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 2.6e-10 70.1 34 91.2
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 9.7e-10 68.2 151 29.8
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 1.7e-09 67.4 107 36.4
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 1.7e-09 67.4 52 57.7
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 7.0e-08 62.0 151 28.5


User provided reference genes

Program Settings