Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 0.0e+00 1115.9 558 100.0
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.9e-253 879.0 558 76.7
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 5.9e-247 857.4 552 76.1
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 3.8e-246 854.7 549 75.8
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 1.9e-245 852.4 551 74.4
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.6e-244 849.4 549 75.0
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 4.7e-244 847.8 549 75.8
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 8.0e-244 847.0 549 74.9
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.4e-243 846.3 549 74.9
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 6.8e-243 844.0 550 74.0
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.5e-242 842.8 550 74.2
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 2.0e-242 842.4 549 75.2
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 2.0e-242 842.4 550 74.5
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 2.0e-242 842.4 556 73.4
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 3.4e-242 841.6 548 73.9
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 5.7e-242 840.9 552 73.0
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 9.8e-242 840.1 552 72.8
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 2.2e-241 839.0 550 73.6
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 2.8e-241 838.6 551 74.2
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 8.3e-241 837.0 549 74.1
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 4.1e-240 834.7 549 74.1
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 4.1e-240 834.7 550 73.5
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 5.4e-240 834.3 549 73.0
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 5.4e-240 834.3 553 73.4
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 9.2e-240 833.6 549 73.2
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 1.6e-239 832.8 553 73.1
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 1.6e-239 832.8 548 73.2
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 3.5e-239 831.6 550 73.6
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 5.9e-239 830.9 551 73.7
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 1.0e-238 830.1 549 73.2
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 2.3e-238 828.9 557 72.2
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 3.9e-238 828.2 551 71.9
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 3.9e-238 828.2 551 72.4
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 5.0e-238 827.8 549 72.9
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 5.0e-238 827.8 549 73.0
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 5.0e-238 827.8 553 71.8
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 5.0e-238 827.8 552 73.2
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 8.6e-238 827.0 551 73.3
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.1e-237 826.6 565 71.9
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.5e-237 826.2 550 72.9
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.9e-237 825.9 549 72.7
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.9e-237 825.9 549 72.7
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.9e-237 825.9 549 72.7
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 2.5e-237 825.5 551 73.0
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 2.5e-237 825.5 549 72.9
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.5e-237 825.5 550 72.9
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 4.3e-237 824.7 549 72.1
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 4.3e-237 824.7 549 72.5
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 4.3e-237 824.7 547 73.5
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 5.6e-237 824.3 551 72.6
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 7.3e-237 823.9 551 72.2
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 9.5e-237 823.5 551 72.2
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 2.8e-236 822.0 551 72.1
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 2.8e-236 822.0 548 71.9
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.6e-236 821.6 550 72.9
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 6.1e-236 820.8 556 72.3
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 1.0e-235 820.1 551 72.6
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 1.4e-235 819.7 551 71.7
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 1.8e-235 819.3 550 72.5
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 1.8e-235 819.3 550 73.5
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 1.8e-235 819.3 548 71.9
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 2.3e-235 818.9 555 71.9
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 3.1e-235 818.5 553 72.5
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 4.0e-235 818.1 555 71.9
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 4.0e-235 818.1 554 73.3
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 6.8e-235 817.4 548 71.7
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 8.9e-235 817.0 549 71.9
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.5e-234 816.2 549 71.0
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 3.4e-234 815.1 551 71.9
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 5.8e-234 814.3 567 70.4
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 7.5e-234 813.9 551 71.9
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 7.5e-234 813.9 553 72.2
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 2.2e-233 812.4 570 69.6
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 2.2e-233 812.4 549 71.6
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.2e-233 812.4 554 71.7
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 4.9e-233 811.2 551 71.9
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 4.9e-233 811.2 550 72.0
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 5.4e-232 807.7 546 71.6
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 5.4e-232 807.7 532 73.9
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.2e-231 806.6 549 71.9
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 7.8e-231 803.9 551 70.1
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 3.9e-230 801.6 552 70.8
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 1.6e-228 796.2 519 75.0
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 3.6e-228 795.0 549 70.7
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 8.9e-227 790.4 563 69.6
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 8.9e-227 790.4 549 69.0
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 2.0e-226 789.3 538 70.8
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 2.0e-226 789.3 535 71.6
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 2.6e-226 788.9 561 69.2
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 1.3e-225 786.6 552 69.0
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 3.7e-225 785.0 549 67.8
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 4.9e-225 784.6 528 72.2
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 1.9e-224 782.7 511 74.6
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 2.4e-224 782.3 553 68.7
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 4.1e-224 781.6 576 66.0
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 9.2e-224 780.4 567 67.0
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 2.1e-223 779.2 552 68.3
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 5.6e-221 771.2 544 68.0
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 4.7e-220 768.1 552 67.6
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 6.2e-220 767.7 552 68.3
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 7.5e-218 760.8 553 65.8
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 1.3e-217 760.0 554 69.9
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.6e-215 753.1 594 64.5
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 7.8e-215 750.7 537 67.6
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 3.0e-214 748.8 487 73.7
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 8.6e-214 747.3 551 67.3
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 5.6e-213 744.6 560 66.4
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 2.8e-212 742.3 549 65.9
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 4.7e-212 741.5 556 64.7
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 1.8e-211 739.6 544 66.7
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 3.4e-210 735.3 593 62.4
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 5.4e-208 728.0 560 64.1
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 1.1e-205 720.3 552 65.8
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 8.1e-204 714.1 540 65.6
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 9.0e-203 710.7 557 62.7
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 2.0e-202 709.5 485 70.9
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 6.0e-199 698.0 548 60.8
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.6e-196 689.9 540 64.1
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 2.1e-196 689.5 444 75.5
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.9e-185 652.5 557 59.1
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 2.9e-185 652.5 545 59.4
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.9e-185 651.7 548 55.7
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 4.6e-183 645.2 434 74.2
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 2.4e-171 606.3 555 58.2
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 8.5e-169 597.8 388 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 7.2e-168 594.7 549 55.0
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 5.1e-166 588.6 394 72.8
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.5e-160 569.7 386 72.0
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.2e-160 568.9 484 55.4
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 1.8e-142 510.4 322 75.5
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 4.5e-130 469.2 318 71.1
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 5.9e-130 468.8 303 75.6
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 1.5e-125 454.1 318 68.2
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 2.9e-124 449.9 287 73.2
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.3e-124 448.7 334 66.2
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.3e-112 409.8 289 69.2
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 3.3e-112 409.8 270 73.0
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 2.6e-109 400.2 265 70.6
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.2e-100 370.5 241 74.7
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 7.6e-93 345.5 237 75.1
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 1.3e-92 344.7 233 72.5
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 1.6e-82 311.2 240 66.2
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 3.6e-79 300.1 263 58.9
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 8.5e-52 209.1 137 73.7
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 8.5e-52 209.1 138 73.2
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.2e-51 207.2 139 71.9
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.6e-50 204.9 139 71.2
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 1.0e-49 202.2 141 71.6
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 2.2e-47 194.5 182 56.6
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.6e-45 187.6 128 71.1
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 1.2e-34 152.1 98 73.5
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 2.6e-32 144.4 121 59.5
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 3.8e-20 104.0 108 52.8
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 9.4e-19 99.4 62 71.0
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 1.2e-18 99.0 62 71.0
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 4.7e-18 97.1 62 69.4
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.7e-18 97.1 63 74.6
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 6.1e-18 96.7 71 60.6
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 1.0e-17 95.9 56 69.6
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.0e-17 94.4 63 71.4
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 6.8e-17 93.2 240 27.1
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 6.3e-15 86.7 489 24.7
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 5.4e-14 83.6 62 61.3
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 1.1e-11 75.9 54 64.8
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 3.6e-10 70.9 499 23.2
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 1.8e-09 68.6 515 23.3
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 5.2e-09 67.0 51 52.9
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 1.4e-06 58.9 64 59.4
ECA247G1273 Erigeron canadensis HOM05D000004 ORTHO05D000002 7.0e-06 56.6 63 39.7


User provided reference genes

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