Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 4.2e-156 554.7 282 100.0
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 6.8e-90 334.7 243 70.4
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 3.1e-87 325.9 285 61.8
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 5.4e-87 325.1 249 65.5
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 7.0e-87 324.7 253 64.4
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 9.1e-87 324.3 249 63.9
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 9.1e-87 324.3 249 63.9
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 1.7e-85 320.1 247 64.4
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 1.7e-85 320.1 238 66.0
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 3.8e-85 318.9 247 64.8
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 3.8e-85 318.9 232 67.7
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 3.8e-85 318.9 232 68.1
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 3.8e-85 318.9 232 67.7
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 1.1e-84 317.4 244 63.1
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 1.1e-84 317.4 244 66.0
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 1.5e-84 317.0 254 63.0
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 3.2e-84 315.8 230 67.4
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 3.2e-84 315.8 247 64.4
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 4.2e-84 315.5 245 65.3
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 4.2e-84 315.5 266 60.9
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 9.4e-84 314.3 265 61.9
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 2.1e-83 313.2 258 61.6
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 2.1e-83 313.2 238 67.6
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 6.1e-83 311.6 271 60.5
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 6.1e-83 311.6 243 64.2
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 6.1e-83 311.6 245 61.6
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 1.8e-82 310.1 276 57.6
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 2.3e-82 309.7 245 63.7
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 5.2e-82 308.5 232 66.4
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 5.2e-82 308.5 249 65.1
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 6.8e-82 308.1 249 59.8
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 8.8e-82 307.8 231 65.4
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 8.8e-82 307.8 244 63.9
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 8.8e-82 307.8 257 62.6
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 8.8e-82 307.8 283 57.2
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 1.2e-81 307.4 236 64.0
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 1.5e-81 307.0 231 64.9
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 1.5e-81 307.0 249 64.7
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 1.5e-81 307.0 242 62.4
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 3.4e-81 305.8 232 65.9
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 3.4e-81 305.8 232 66.4
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 4.4e-81 305.4 262 61.5
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 7.5e-81 304.7 242 63.6
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 7.5e-81 304.7 242 62.0
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 1.3e-80 303.9 255 63.1
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 1.3e-80 303.9 249 64.3
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 2.2e-80 303.1 249 59.8
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 2.8e-80 302.8 247 61.5
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 8.3e-80 301.2 238 63.0
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 8.3e-80 301.2 238 63.0
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 8.3e-80 301.2 240 61.7
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 1.1e-79 300.8 263 60.8
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 1.4e-79 300.4 240 61.2
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 2.4e-79 299.7 271 56.8
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 2.4e-79 299.7 229 63.8
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 2.4e-79 299.7 281 58.0
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 2.4e-79 299.7 248 60.5
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 3.1e-79 299.3 240 61.2
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 3.1e-79 299.3 249 59.0
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 4.1e-79 298.9 241 59.8
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 1.2e-78 297.4 240 59.6
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 1.6e-78 297.0 233 61.8
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 3.5e-78 295.8 277 55.6
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 4.5e-78 295.4 234 60.7
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 5.9e-78 295.0 277 55.6
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 1.0e-77 294.3 276 58.7
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 1.7e-77 293.5 299 53.5
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 1.7e-77 293.5 245 63.3
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 2.3e-77 293.1 277 55.2
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 6.6e-77 291.6 249 58.2
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 4.2e-76 288.9 230 61.7
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 5.6e-76 288.5 287 53.0
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 5.6e-76 288.5 276 54.3
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 9.5e-76 287.7 276 53.6
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 2.1e-75 286.6 251 58.6
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 1.2e-73 280.8 210 67.6
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 5.7e-73 278.5 209 66.0
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 2.7e-70 269.6 267 54.3
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 1.3e-69 267.3 242 56.6
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 2.3e-69 266.5 209 62.2
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 3.9e-69 265.8 285 51.9
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 3.3e-68 262.7 240 55.8
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 1.2e-67 260.8 222 58.6
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 1.0e-66 257.7 197 64.5
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 6.8e-66 255.0 220 60.9
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 8.9e-66 254.6 206 61.2
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 1.3e-61 240.7 178 66.9
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 8.6e-61 238.0 241 54.4
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.6e-59 233.8 208 58.2
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 1.2e-51 207.6 244 48.0
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 3.6e-51 206.1 177 59.9
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 6.2e-51 205.3 222 52.3
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 6.4e-48 195.3 183 56.8
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 2.7e-46 189.9 168 60.7
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 3.0e-45 186.4 133 68.4
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 3.9e-45 186.0 173 56.1
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 5.6e-44 182.2 308 39.3
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 9.6e-44 181.4 252 45.2
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 2.8e-43 179.9 180 54.4
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 1.4e-39 167.5 181 53.0
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 6.6e-37 158.7 171 50.3
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 2.6e-33 146.7 135 55.6
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 4.4e-33 146.0 134 55.2
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 5.8e-33 145.6 138 52.9
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 5.8e-33 145.6 155 50.3
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 8.4e-32 141.7 101 67.3
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 6.2e-27 125.6 116 58.6
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 9.0e-26 121.7 96 62.5
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 1.7e-24 117.5 90 66.7
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 6.4e-24 115.5 94 60.6
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.0e-21 108.2 120 54.2
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 6.7e-21 105.5 97 50.5
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 1.9e-20 104.0 104 51.0
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 4.8e-19 99.4 101 52.5
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 4.8e-19 99.4 229 31.9
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 5.5e-15 85.9 75 60.0
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 7.1e-15 85.5 50 80.0
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 2.3e-13 80.5 102 44.1
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-13 79.7 97 44.3
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 4.3e-12 76.3 53 71.7
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 7.4e-12 75.5 87 47.1
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 2.6e-09 67.0 71 50.7
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 4.5e-09 66.2 65 52.3
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 8.4e-08 62.0 65 53.8
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 1.4e-07 61.2 86 47.7


User provided reference genes

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