Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0314G006 Amborella trichopoda HOM05D005011 ORTHO05D006443 3.2e-119 431.8 219 100.0
ATR0314G021 Amborella trichopoda HOM05D005011 ORTHO05D006443 1.4e-98 363.2 219 88.1
Duzib128G0881 Durio zibethinus HOM05D005011 ORTHO05D006443 6.6e-77 291.2 219 68.9
TAR623G0402 Trochodendron aralioides HOM05D005011 ORTHO05D006443 1.9e-76 289.7 219 67.6
Duzib106G1740 Durio zibethinus HOM05D005011 ORTHO05D006443 3.3e-76 288.9 219 66.7
Dinv37275 Davidia involucrata HOM05D005011 ORTHO05D006443 5.6e-76 288.1 219 66.7
Thecc.05G057500 Theobroma cacao HOM05D005011 ORTHO05D006443 7.4e-76 287.7 219 68.0
TAR636G2418 Trochodendron aralioides HOM05D005011 ORTHO05D006443 9.6e-76 287.3 219 67.1
Duzib093G0219 Durio zibethinus HOM05D005011 ORTHO05D006443 1.6e-75 286.6 219 66.7
Sc20g0005180 Simmondsia chinensis HOM05D005011 ORTHO05D006443 2.1e-75 286.2 219 66.2
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 2.8e-75 285.8 219 65.3
Lj2A111T58 Lonicera japonica HOM05D005011 ORTHO05D006443 6.2e-75 284.6 219 65.3
Atru.chr8.1881 Acer truncatum HOM05D005011 ORTHO05D006443 8.1e-75 284.3 219 66.7
Dinv35745 Davidia involucrata HOM05D005011 ORTHO05D006443 8.1e-75 284.3 219 65.8
QL07p044722 Quercus lobata HOM05D005011 ORTHO05D006443 8.1e-75 284.3 219 65.8
Gohir.A09G150600 Gossypium hirsutum HOM05D005011 ORTHO05D006443 1.1e-74 283.9 217 67.3
Eucgr.K03238 Eucalyptus grandis HOM05D005011 ORTHO05D006443 3.1e-74 282.3 219 65.8
Nn2g13067 Nelumbo nucifera HOM05D005011 ORTHO05D006443 4.0e-74 282.0 219 65.3
TWI53G1318 Tripterygium wilfordii HOM05D005011 ORTHO05D006443 5.3e-74 281.6 219 65.3
GSVIVG01025659001 Vitis vinifera HOM05D005011 ORTHO05D006443 6.9e-74 281.2 217 66.4
PGR142G0484 Punica granatum HOM05D005011 ORTHO05D006443 9.0e-74 280.8 219 64.8
Manes.08G005800 Manihot esculenta HOM05D005011 ORTHO05D006443 1.2e-73 280.4 219 65.8
Cpa.g.sc45.60 Carica papaya HOM05D005011 ORTHO05D006443 2.0e-73 279.6 219 66.2
CSS0006107 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 2.6e-73 279.3 219 64.8
Hma1.2p1_0614F.1_g189520 Hydrangea macrophylla HOM05D005011 ORTHO05D006443 2.6e-73 279.3 219 65.3
Gorai.006G167500 Gossypium raimondii HOM05D005011 ORTHO05D006443 3.4e-73 278.9 217 66.8
Oeu059978.1 Olea europaea HOM05D005011 ORTHO05D006443 3.4e-73 278.9 219 65.3
CAN.G888.19 Capsicum annuum HOM05D005011 ORTHO05D006443 4.5e-73 278.5 219 63.9
Aqoxy4G03250 Aquilegia oxysepala HOM05D005011 ORTHO05D006443 5.8e-73 278.1 219 65.3
Haze_20614 Corylus avellana HOM05D005011 ORTHO05D006443 5.8e-73 278.1 217 65.4
Solyc09g007630.3 Solanum lycopersicum HOM05D005011 ORTHO05D006443 7.6e-73 277.7 219 63.5
Cfa017534 Carpinus fangiana HOM05D005011 ORTHO05D006443 9.9e-73 277.3 217 65.4
CiPaw.09G177600 Carya illinoinensis HOM05D005011 ORTHO05D006443 9.9e-73 277.3 217 65.9
Sopen09g002500 Solanum pennellii HOM05D005011 ORTHO05D006443 9.9e-73 277.3 219 63.5
Gohir.A01G215700 Gossypium hirsutum HOM05D005011 ORTHO05D006443 1.3e-72 276.9 219 64.8
Gohir.D09G146300 Gossypium hirsutum HOM05D005011 ORTHO05D006443 1.3e-72 276.9 217 66.4
Gorai.002G248700 Gossypium raimondii HOM05D005011 ORTHO05D006443 1.7e-72 276.6 219 64.8
Ciclev10011610m.g Citrus clementina HOM05D005011 ORTHO05D006443 2.2e-72 276.2 219 64.4
Gohir.D01G204500 Gossypium hirsutum HOM05D005011 ORTHO05D006443 2.2e-72 276.2 219 64.8
Rhsim05G0182800 Rhododendron simsii HOM05D005011 ORTHO05D006443 2.2e-72 276.2 219 63.9
RcHm_v2.0_Chr3g0469391 Rosa chinensis HOM05D005011 ORTHO05D006443 2.2e-72 276.2 217 64.5
CARHR084180 Cardamine hirsuta HOM05D005011 ORTHO05D006443 2.9e-72 275.8 219 63.5
PGSC0003DMG400001752 Solanum tuberosum HOM05D005011 ORTHO05D006443 3.8e-72 275.4 219 63.5
TWI74G0245 Tripterygium wilfordii HOM05D005011 ORTHO05D006443 3.8e-72 275.4 219 63.9
vmacro20042 Vaccinium macrocarpon HOM05D005011 ORTHO05D006443 3.8e-72 275.4 219 63.5
PSO339G5285 Papaver somniferum HOM05D005011 ORTHO05D006443 4.9e-72 275.0 219 63.5
Aa31LG3G2190 Aethionema arabicum HOM05D005011 ORTHO05D006443 6.4e-72 274.6 219 63.5
arahy.Tifrunner.gnm1.ann1.P0ZPTX Arachis hypogaea HOM05D005011 ORTHO05D006443 6.4e-72 274.6 219 64.4
Lj1g0002210 Lotus japonicus HOM05D005011 ORTHO05D006443 6.4e-72 274.6 219 63.9
Manes.09G069500 Manihot esculenta HOM05D005011 ORTHO05D006443 6.4e-72 274.6 219 63.5
arahy.Tifrunner.gnm1.ann1.BXCF5W Arachis hypogaea HOM05D005011 ORTHO05D006443 8.4e-72 274.2 219 64.4
CARHR210200 Cardamine hirsuta HOM05D005011 ORTHO05D006443 8.4e-72 274.2 219 63.5
AUR62040051 Chenopodium quinoa HOM05D005011 ORTHO05D006443 8.4e-72 274.2 219 64.8
Ca_08838_v3 Cicer arietinum L. HOM05D005011 ORTHO05D006443 8.4e-72 274.2 219 63.9
PSO063G2699 Papaver somniferum HOM05D005011 ORTHO05D006443 8.4e-72 274.2 217 64.1
Cc06_g03820 Coffea canephora HOM05D005011 ORTHO05D006443 1.1e-71 273.9 217 63.6
SGA_v2.0_scaffold452G51844 Striga asiatica HOM05D005011 ORTHO05D006443 1.1e-71 273.9 217 63.1
COL.COLO4_27042 Corchorus olitorius HOM05D005011 ORTHO05D006443 1.4e-71 273.5 219 63.5
DCAR_020841 Daucus carota HOM05D005011 ORTHO05D006443 1.4e-71 273.5 219 62.6
ECA238G1048 Erigeron canadensis HOM05D005011 ORTHO05D006443 1.4e-71 273.5 219 63.9
Peaxi162Scf00182g00120 Petunia axillaris HOM05D005011 ORTHO05D006443 1.9e-71 273.1 217 63.6
FvH4_6g15690 Fragaria vesca HOM05D005011 ORTHO05D006443 2.4e-71 272.7 217 63.6
FAN14G4454 Fragaria x ananassa HOM05D005011 ORTHO05D006443 2.4e-71 272.7 217 63.6
Nitab4.5_0005150g0050 Nicotiana tabacum HOM05D005011 ORTHO05D006443 2.4e-71 272.7 219 62.6
Sed0004997 Sechium edule HOM05D005011 ORTHO05D006443 2.4e-71 272.7 219 64.4
BcaC06g32036 Brassica carinata HOM05D005011 ORTHO05D006443 4.2e-71 271.9 219 63.0
A10p32770 Brassica napus HOM05D005011 ORTHO05D006443 4.2e-71 271.9 219 63.0
C09p73640 Brassica napus HOM05D005011 ORTHO05D006443 4.2e-71 271.9 219 63.0
BolC9t60094H Brassica oleracea HOM05D005011 ORTHO05D006443 4.2e-71 271.9 219 63.0
BraA10t45311Z Brassica rapa HOM05D005011 ORTHO05D006443 4.2e-71 271.9 219 63.0
Carub.0006s0195 Capsella rubella HOM05D005011 ORTHO05D006443 4.2e-71 271.9 219 63.9
FAN09G2426 Fragaria x ananassa HOM05D005011 ORTHO05D006443 4.2e-71 271.9 217 63.1
Oeu014965.1 Olea europaea HOM05D005011 ORTHO05D006443 4.2e-71 271.9 219 62.6
FAN02G2869 Fragaria x ananassa HOM05D005011 ORTHO05D006443 5.5e-71 271.6 217 63.1
FAN05G4704 Fragaria x ananassa HOM05D005011 ORTHO05D006443 5.5e-71 271.6 217 63.1
MSTRG.26712 Avicennia marina HOM05D005011 ORTHO05D006443 7.1e-71 271.2 219 62.6
AL6G12440 Arabidopsis lyrata HOM05D005011 ORTHO05D006443 9.3e-71 270.8 219 63.5
AT5G03160 Arabidopsis thaliana HOM05D005011 ORTHO05D006443 9.3e-71 270.8 219 63.5
ClCG04G008930 Citrullus lanatus HOM05D005011 ORTHO05D006443 9.3e-71 270.8 219 63.9
Medtr7g101070 Medicago truncatula HOM05D005011 ORTHO05D006443 9.3e-71 270.8 219 62.1
Nitab4.5_0000101g0010 Nicotiana tabacum HOM05D005011 ORTHO05D006443 9.3e-71 270.8 219 62.1
Hund20209 Selenicereus undatus HOM05D005011 ORTHO05D006443 1.2e-70 270.4 217 63.6
Thhalv10013408m.g Eutrema salsugineum HOM05D005011 ORTHO05D006443 1.6e-70 270.0 219 63.5
CANSAT80G2737 Cannabis sativa HOM05D005011 ORTHO05D006443 2.7e-70 269.2 219 62.6
Os02g0195300 Oryza sativa ssp. japonica HOM05D005011 ORTHO05D006443 2.7e-70 269.2 219 62.1
Ah.15g092230 Amaranthus hybridus HOM05D005011 ORTHO05D006443 3.5e-70 268.9 217 65.0
CSS0031764 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 4.6e-70 268.5 219 63.0
Migut.L01677 Erythranthe guttata HOM05D005011 ORTHO05D006443 4.6e-70 268.5 219 63.0
THA.LOC104816331 Tarenaya hassleriana HOM05D005011 ORTHO05D006443 4.6e-70 268.5 219 61.2
MD04G1100100 Malus domestica HOM05D005011 ORTHO05D006443 6.0e-70 268.1 219 63.0
TPR.G18270 Trifolium pratense HOM05D005011 ORTHO05D006443 1.0e-69 267.3 219 62.1
EL10Ac7g16537 Beta vulgaris HOM05D005011 ORTHO05D006443 1.3e-69 266.9 219 63.0
Os01g0977200 Oryza sativa ssp. japonica HOM05D005011 ORTHO05D006443 1.3e-69 266.9 219 61.6
Potri.016G088600 Populus trichocarpa HOM05D005011 ORTHO05D006443 1.3e-69 266.9 219 61.2
SEGI_03688 Sequoiadendron giganteum HOM05D005011 ORTHO05D006443 1.3e-69 266.9 219 63.0
Prupe.6G238400 Prunus persica HOM05D005011 ORTHO05D006443 1.8e-69 266.5 219 62.6
Sed0021094 Sechium edule HOM05D005011 ORTHO05D006443 1.8e-69 266.5 219 62.6
Lsat_1_v5_gn_2_108740 Lactuca sativa HOM05D005011 ORTHO05D006443 2.3e-69 266.2 219 61.6
Phvul.001G176300 Phaseolus vulgaris HOM05D005011 ORTHO05D006443 2.3e-69 266.2 219 61.6
MELO3C014249.2 Cucumis melo HOM05D005011 ORTHO05D006443 3.0e-69 265.8 219 62.6
Glyma.19G180600 Glycine max HOM05D005011 ORTHO05D006443 3.9e-69 265.4 219 61.6
CsaV3_6G039440 Cucumis sativus L. HOM05D005011 ORTHO05D006443 5.1e-69 265.0 219 62.6
Psat3g044040 Pisum sativum HOM05D005011 ORTHO05D006443 8.7e-69 264.2 219 61.2
Sp6g39560 Schrenkiella parvula HOM05D005011 ORTHO05D006443 1.1e-68 263.8 219 62.1
DCAR_009276 Daucus carota HOM05D005011 ORTHO05D006443 1.5e-68 263.5 219 60.7
Lalb_Chr20g0112801 Lupinus albus HOM05D005011 ORTHO05D006443 1.9e-68 263.1 219 61.2
Aa31LG1G21920 Aethionema arabicum HOM05D005011 ORTHO05D006443 2.5e-68 262.7 231 58.9
Lalb_Chr01g0018931 Lupinus albus HOM05D005011 ORTHO05D006443 2.5e-68 262.7 219 60.7
VMungo1383G1126 Vigna mungo HOM05D005011 ORTHO05D006443 2.5e-68 262.7 219 61.2
HanXRQChr07g0195601 Helianthus annuus HOM05D005011 ORTHO05D006443 4.3e-68 261.9 219 59.8
MD12G1120200 Malus domestica HOM05D005011 ORTHO05D006443 5.6e-68 261.5 219 61.6
Glyma.03G179800 Glycine max HOM05D005011 ORTHO05D006443 9.6e-68 260.8 219 61.2
Sabra16G0094100 Salix brachista HOM05D005011 ORTHO05D006443 9.6e-68 260.8 219 59.4
Lalb_Chr25g0289171 Lupinus albus HOM05D005011 ORTHO05D006443 1.3e-67 260.4 219 61.2
HPP92_025091 Vanilla planifolia HOM05D005011 ORTHO05D006443 1.3e-67 260.4 219 60.7
Zm00001eb362030 Zea mays HOM05D005011 ORTHO05D006443 1.6e-67 260.0 219 60.7
SHI12530 Sapria himalayana HOM05D005011 ORTHO05D006443 7.6e-65 251.1 219 58.0
unitig_0.g690 Utricularia gibba HOM05D005011 ORTHO05D006443 3.5e-62 242.3 275 49.5
CSS0037236 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 1.6e-54 216.9 219 55.3
Mapoly0115s0071 Marchantia polymorpha HOM05D005011 ORTHO05D006443 2.6e-49 199.5 217 50.7
SMO118G0210 Selaginella moellendorffii HOM05D005011 ORTHO05D006443 3.8e-48 195.7 217 49.8
Actinidia19688 Actinidia chinensis HOM05D005011 ORTHO05D006443 1.7e-43 180.3 182 52.2
Pp3c2_9790 Physcomitrium patens HOM05D005011 ORTHO05D006443 3.7e-43 179.1 216 45.4
CBR_g32064 Chara braunii HOM05D005011 ORTHO05D006443 1.3e-35 154.1 189 41.3
AUR62043149 Chenopodium quinoa HOM05D005011 ORTHO05D006443 1.8e-34 150.2 127 62.2
CSS0012228 Camellia sinensis var. sinensis HOM05D005011 ORTHO05D006443 8.0e-30 134.8 146 52.1
SalBow5G1413 Salvia bowleyana HOM05D005011 ORTHO05D006443 9.7e-28 127.9 94 66.0
BcaB02g11526 Brassica carinata HOM05D005011 ORTHO05D006443 1.2e-25 120.9 94 63.8
SalBow5G2506 Salvia bowleyana HOM05D005011 ORTHO05D006443 5.2e-21 105.5 71 64.8
SalBow5G5390 Salvia bowleyana HOM05D005011 ORTHO05D006443 5.2e-21 105.5 71 64.8
Cre01.g032500 Chlamydomonas reinhardtii HOM05D005011 ORTHO05D006443 3.6e-14 82.8 173 30.1
Aa31LG4G10620 Aethionema arabicum HOM05D005011 ORTHO05D006443 4.4e-12 75.9 88 46.6
VMungo0464G0003 Vigna mungo HOM05D001005 ORTHO05D006443 2.2e-11 73.6 48 68.8
ATR0314G017 Amborella trichopoda HOM05D005011 ORTHO05D006443 4.1e-10 69.3 33 93.9
MBI05_g35615_MAGBIO Magnolia biondii HOM05D005011 ORTHO05D006443 3.3e-07 59.7 35 74.3
arahy.Tifrunner.gnm1.ann1.W8GZLX Arachis hypogaea HOM05D000144 ORTHO05D003364 4.7e-06 55.8 81 35.8
arahy.Tifrunner.gnm1.ann1.ZBIL8C Arachis hypogaea HOM05D000144 ORTHO05D003364 4.7e-06 55.8 81 35.8


User provided reference genes

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