Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 2.6e-116 422.2 226 100.0
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 9.5e-103 377.1 223 87.0
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 8.1e-102 374.0 224 85.7
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 3.1e-101 372.1 225 85.3
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 2.6e-100 369.0 229 85.2
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 9.8e-100 367.1 224 85.3
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 9.8e-100 367.1 224 85.3
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 9.8e-100 367.1 224 84.8
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 1.3e-99 366.7 223 84.8
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 1.3e-99 366.7 225 83.6
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 1.7e-99 366.3 226 85.0
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 1.7e-99 366.3 226 84.1
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 2.2e-99 365.9 227 85.0
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 2.2e-99 365.9 232 81.9
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.2e-99 365.9 226 84.5
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 2.2e-99 365.9 224 85.3
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 2.2e-99 365.9 226 84.5
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 2.9e-99 365.5 227 85.0
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 3.7e-99 365.2 221 86.9
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 3.7e-99 365.2 226 84.5
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 6.4e-99 364.4 226 84.1
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 8.3e-99 364.0 225 84.4
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 8.3e-99 364.0 225 84.4
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 1.1e-98 363.6 224 85.3
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 1.1e-98 363.6 223 84.8
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.4e-98 363.2 224 84.8
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 1.4e-98 363.2 222 83.8
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 1.4e-98 363.2 226 83.6
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 2.4e-98 362.5 225 82.7
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 2.4e-98 362.5 220 83.6
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 3.2e-98 362.1 221 82.4
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 3.2e-98 362.1 225 84.0
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 4.1e-98 361.7 224 83.9
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.1e-98 361.7 224 84.4
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 4.1e-98 361.7 227 85.0
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 4.1e-98 361.7 223 82.5
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 5.4e-98 361.3 226 83.2
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 5.4e-98 361.3 225 83.1
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 7.1e-98 360.9 229 83.4
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 9.2e-98 360.5 224 82.6
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 9.2e-98 360.5 224 80.8
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 1.2e-97 360.1 226 83.6
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.2e-97 360.1 228 83.8
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 1.6e-97 359.8 228 82.5
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 1.6e-97 359.8 222 84.2
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.6e-97 359.8 224 83.9
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 1.6e-97 359.8 228 82.9
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 1.6e-97 359.8 224 83.9
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 2.1e-97 359.4 225 83.1
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 2.1e-97 359.4 223 83.4
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 2.7e-97 359.0 225 83.1
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 2.7e-97 359.0 230 80.9
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 2.7e-97 359.0 232 82.3
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 3.5e-97 358.6 225 83.1
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 3.5e-97 358.6 226 83.6
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 4.6e-97 358.2 228 84.2
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 4.6e-97 358.2 231 82.7
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 4.6e-97 358.2 230 80.4
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.0e-96 357.1 226 83.2
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 1.0e-96 357.1 222 82.9
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.0e-96 357.1 226 83.2
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 1.0e-96 357.1 224 83.0
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 1.3e-96 356.7 225 83.1
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 1.3e-96 356.7 225 82.2
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 1.3e-96 356.7 226 83.2
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.3e-96 356.7 226 82.3
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 1.7e-96 356.3 225 82.7
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 1.7e-96 356.3 228 82.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.7e-96 356.3 211 86.7
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 3.0e-96 355.5 225 82.2
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 3.0e-96 355.5 225 82.2
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 3.0e-96 355.5 228 81.1
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 3.9e-96 355.1 225 83.1
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 3.9e-96 355.1 230 84.8
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 5.1e-96 354.8 223 81.6
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 5.1e-96 354.8 222 82.0
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 6.6e-96 354.4 224 82.6
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 6.6e-96 354.4 228 81.1
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 6.6e-96 354.4 228 81.1
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 1.1e-95 353.6 227 80.6
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 1.1e-95 353.6 227 79.3
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 1.5e-95 353.2 226 82.7
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 1.5e-95 353.2 226 82.7
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 1.5e-95 353.2 226 82.7
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 2.5e-95 352.4 226 82.3
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 4.3e-95 351.7 228 80.3
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 4.3e-95 351.7 224 83.0
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 4.3e-95 351.7 224 82.6
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 5.6e-95 351.3 223 81.6
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 5.6e-95 351.3 220 83.2
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 7.3e-95 350.9 226 81.9
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 7.3e-95 350.9 253 75.1
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 1.2e-94 350.1 222 80.6
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 1.6e-94 349.7 228 78.1
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 2.1e-94 349.4 228 78.1
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 2.8e-94 349.0 227 81.5
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.8e-94 349.0 224 81.7
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 2.8e-94 349.0 228 82.5
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 3.6e-94 348.6 230 79.1
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 4.7e-94 348.2 226 81.4
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 4.7e-94 348.2 218 83.0
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 6.2e-94 347.8 228 79.8
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 6.2e-94 347.8 228 79.8
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 8.1e-94 347.4 230 80.0
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.1e-93 347.1 212 84.9
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 1.1e-93 347.1 228 80.3
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 3.1e-93 345.5 208 86.5
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 3.1e-93 345.5 221 81.4
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 5.2e-93 344.7 229 81.2
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 2.0e-92 342.8 226 79.2
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 2.4e-90 335.9 203 85.7
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 6.2e-86 321.2 297 63.0
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.1e-85 320.5 214 77.1
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 8.9e-85 317.4 206 78.2
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 1.5e-84 316.6 192 86.5
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 5.8e-84 314.7 233 74.2
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 1.2e-81 307.0 221 75.1
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 9.0e-77 290.8 215 72.6
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 8.4e-75 284.3 187 80.2
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 1.3e-72 276.9 175 81.7
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 8.7e-72 274.2 191 78.5
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 1.6e-70 270.0 177 80.2
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 2.8e-70 269.2 181 78.5
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 3.1e-69 265.8 161 87.6
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 4.0e-69 265.4 158 88.6
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.0e-69 264.2 186 77.4
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 2.6e-68 262.7 158 88.6
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 5.8e-68 261.5 158 88.0
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 9.3e-66 254.2 157 85.4
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 3.5e-65 252.3 166 80.7
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 4.6e-65 251.9 159 83.6
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 1.4e-58 230.3 160 76.9
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 5.3e-53 211.8 156 76.3
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 1.5e-47 193.7 161 68.3
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 3.9e-40 169.1 110 83.6
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 5.7e-39 165.2 94 91.5
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 1.7e-38 163.7 103 82.5
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.7e-33 145.6 158 54.4
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.7e-30 137.1 88 85.2
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 3.8e-27 125.9 79 77.2
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 2.7e-25 119.8 209 39.7
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 1.1e-21 107.8 60 88.3
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 2.9e-19 99.8 78 67.9
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 5.5e-18 95.5 63 71.4
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 7.5e-15 85.1 65 64.6
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 2.7e-12 76.6 66 62.1
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 7.2e-10 68.6 50 70.0


User provided reference genes

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