Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 2.1e-115 419.1 220 100.0
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 9.6e-76 287.3 208 70.2
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 3.1e-74 282.3 208 70.2
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 5.3e-74 281.6 207 71.5
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 9.0e-74 280.8 211 68.2
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 2.6e-73 279.3 211 71.1
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 2.6e-73 279.3 211 71.1
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 3.4e-73 278.9 207 71.0
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.3e-72 276.9 207 69.1
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.7e-72 276.6 208 67.3
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.7e-72 276.6 208 67.3
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 1.7e-72 276.6 207 70.5
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 2.9e-72 275.8 205 67.8
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 5.0e-72 275.0 207 67.6
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 5.0e-72 275.0 208 68.8
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 6.5e-72 274.6 208 67.3
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.4e-71 273.5 208 67.3
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 1.4e-71 273.5 211 69.2
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 1.4e-71 273.5 205 67.3
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 3.2e-71 272.3 211 66.4
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 4.2e-71 271.9 211 67.3
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 4.2e-71 271.9 208 67.3
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 4.2e-71 271.9 207 68.6
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 5.5e-71 271.6 208 68.8
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 5.5e-71 271.6 207 66.7
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 7.2e-71 271.2 204 66.7
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 2.1e-70 269.6 211 67.3
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 2.1e-70 269.6 210 65.7
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.7e-70 269.2 207 67.6
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 3.6e-70 268.9 208 67.8
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 4.6e-70 268.5 207 67.1
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 7.9e-70 267.7 207 66.7
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 7.9e-70 267.7 207 68.1
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.3e-69 266.9 207 66.7
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 1.3e-69 266.9 207 67.1
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.3e-69 266.2 207 65.2
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 2.3e-69 266.2 206 68.0
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 3.9e-69 265.4 207 65.7
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 3.9e-69 265.4 211 64.0
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 6.7e-69 264.6 203 68.0
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 8.7e-69 264.2 207 66.2
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 1.1e-68 263.8 207 66.2
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 1.1e-68 263.8 208 65.9
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.1e-68 263.8 205 66.3
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.5e-68 263.5 215 65.1
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.9e-68 263.1 233 63.1
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 5.7e-68 261.5 207 65.2
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 9.7e-68 260.8 213 66.2
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 1.3e-67 260.4 208 64.9
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.3e-67 260.4 207 65.2
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.3e-67 260.4 201 67.2
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 2.8e-67 259.2 208 64.9
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 3.7e-67 258.8 210 66.2
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 3.7e-67 258.8 249 58.6
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 1.4e-66 256.9 210 65.7
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 1.4e-66 256.9 212 64.2
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.4e-66 256.9 204 66.7
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.8e-66 256.5 209 63.2
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 5.3e-66 255.0 208 63.9
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 9.0e-66 254.2 231 58.4
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.2e-65 253.8 210 63.8
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 1.5e-65 253.4 208 63.9
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 2.6e-65 252.7 208 66.8
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 2.6e-65 252.7 208 65.4
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 2.6e-65 252.7 209 62.2
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 3.4e-65 252.3 208 66.3
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 3.4e-65 252.3 235 58.3
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 3.4e-65 252.3 208 65.9
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 4.5e-65 251.9 208 63.5
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 5.9e-65 251.5 208 65.9
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 1.0e-64 250.8 208 65.9
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 1.7e-64 250.0 208 66.3
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 2.2e-64 249.6 204 63.2
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.9e-64 249.2 208 64.9
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.9e-64 249.2 207 66.2
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 3.8e-64 248.8 209 61.2
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 5.0e-64 248.4 208 63.5
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 6.5e-64 248.1 208 65.9
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 8.5e-64 247.7 209 65.1
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 1.1e-63 247.3 212 61.3
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.9e-63 246.5 204 64.2
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 3.2e-63 245.7 208 63.0
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 4.2e-63 245.4 212 62.3
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 4.2e-63 245.4 209 63.2
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 5.5e-63 245.0 204 63.7
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 7.2e-63 244.6 209 63.6
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 7.2e-63 244.6 256 52.3
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 9.4e-63 244.2 218 61.9
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 9.4e-63 244.2 218 61.9
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 1.2e-62 243.8 218 61.9
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 1.2e-62 243.8 218 61.9
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 1.6e-62 243.4 204 63.7
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 2.1e-62 243.0 209 65.6
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 2.1e-62 243.0 200 64.0
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 2.7e-62 242.7 203 63.1
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 3.6e-62 242.3 205 62.4
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 6.1e-62 241.5 204 60.8
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 6.1e-62 241.5 205 62.4
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 7.9e-62 241.1 204 63.7
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.4e-61 240.4 207 63.3
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.8e-61 240.0 204 64.7
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 5.1e-61 238.4 204 62.7
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 5.1e-61 238.4 203 62.6
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.0e-60 236.5 204 62.3
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 2.0e-60 236.5 208 60.6
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 4.4e-60 235.3 205 62.0
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 5.7e-60 235.0 206 63.6
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 3.7e-59 232.3 204 60.8
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 4.8e-59 231.9 186 67.7
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 4.8e-59 231.9 264 50.4
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 4.8e-59 231.9 205 62.9
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 3.1e-58 229.2 203 61.1
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 6.9e-58 228.0 207 61.4
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 9.1e-58 227.6 208 60.1
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.2e-57 227.3 207 60.9
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 1.5e-57 226.9 210 60.5
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 5.9e-57 224.9 241 54.4
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.2e-56 223.0 206 60.2
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.9e-56 222.6 222 56.8
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 2.9e-56 222.6 246 52.8
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.9e-55 219.9 211 61.6
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 1.9e-55 219.9 208 55.3
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 7.9e-54 214.5 176 60.2
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 3.9e-53 212.2 218 56.0
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 5.7e-52 208.4 148 70.9
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 6.3e-51 204.9 215 55.8
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 6.3e-51 204.9 205 52.7
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 7.7e-49 198.0 199 56.8
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 1.0e-48 197.6 151 66.2
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 1.7e-48 196.8 149 67.1
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.2e-48 196.4 203 51.2
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 7.2e-47 191.4 149 64.4
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.6e-46 189.1 204 50.5
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 1.1e-42 177.6 131 67.9
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.0e-40 171.0 204 51.5
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 1.5e-39 167.2 128 65.6
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 6.1e-38 161.8 121 67.8
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 1.0e-37 161.0 225 47.1
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 3.4e-36 156.0 164 52.4
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 1.1e-34 151.0 108 71.3
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 4.5e-33 145.6 229 42.4
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 1.6e-30 137.1 208 41.8
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 1.4e-29 134.0 124 58.9
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 3.4e-28 129.4 79 73.4
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 1.3e-27 127.5 244 38.1
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.0e-21 107.8 108 56.5
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.0e-21 106.3 174 37.4
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 6.4e-19 98.6 82 65.9
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 2.7e-17 93.2 205 34.6
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 6.8e-13 78.6 63 55.6
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 2.0e-12 77.0 58 69.0
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 1.7e-11 73.9 56 57.1
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 1.7e-08 63.9 245 28.6
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.2e-06 55.5 58 56.9


User provided reference genes

Program Settings