Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.1e-233 813.1 462 100.0
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 6.3e-170 601.3 465 74.2
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 4.3e-166 588.6 461 73.5
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 2.8e-165 585.9 461 74.6
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 3.6e-165 585.5 465 72.9
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 4.7e-165 585.1 462 74.0
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 6.1e-165 584.7 462 74.0
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 4.0e-164 582.0 458 70.7
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 1.5e-163 580.1 461 72.9
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 2.6e-163 579.3 461 73.1
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 3.4e-163 578.9 461 72.9
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 4.4e-163 578.6 458 70.3
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.1e-161 573.9 459 72.1
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 1.4e-161 573.5 459 73.2
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 3.2e-161 572.4 459 73.2
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 4.1e-161 572.0 461 74.0
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 9.2e-161 570.9 462 72.7
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 4.6e-160 568.5 461 71.6
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 5.9e-160 568.2 460 73.0
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 5.9e-160 568.2 461 71.6
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 1.3e-159 567.0 462 72.5
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.3e-159 566.2 460 73.0
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 5.0e-159 565.1 459 69.5
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 6.6e-159 564.7 461 72.5
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 8.6e-159 564.3 461 71.8
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 8.6e-159 564.3 461 71.1
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.5e-158 563.5 461 70.1
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 2.5e-158 562.8 461 72.2
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 4.3e-158 562.0 461 72.2
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 7.3e-158 561.2 458 71.2
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 6.2e-157 558.1 461 72.0
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 6.2e-157 558.1 462 70.8
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 1.0e-156 557.4 459 70.6
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 3.4e-155 552.4 461 69.8
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 4.4e-155 552.0 459 70.6
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 7.5e-155 551.2 459 69.3
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 9.8e-155 550.8 459 71.7
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 9.8e-155 550.8 465 69.0
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 9.8e-155 550.8 461 70.1
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 1.7e-154 550.1 460 70.9
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 3.7e-154 548.9 461 69.4
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 6.4e-154 548.1 460 69.3
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 1.1e-153 547.4 461 70.1
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 5.4e-153 545.0 459 69.9
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 1.2e-152 543.9 459 70.2
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 1.6e-152 543.5 460 68.0
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 2.0e-152 543.1 460 69.6
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 2.7e-152 542.7 463 62.9
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 2.7e-152 542.7 461 69.0
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 2.7e-152 542.7 464 68.5
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 2.7e-152 542.7 459 69.5
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 4.6e-152 542.0 461 69.2
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 4.6e-152 542.0 462 69.7
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 4.6e-152 542.0 454 70.5
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 7.8e-152 541.2 460 70.0
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.3e-151 540.4 459 67.8
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 2.3e-151 539.7 461 69.2
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 8.6e-151 537.7 440 72.5
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 1.1e-150 537.3 461 69.0
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 1.1e-150 537.3 462 62.6
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 4.3e-150 535.4 459 69.3
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 7.3e-150 534.6 458 62.2
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 7.3e-150 534.6 458 62.2
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 1.2e-149 533.9 466 67.6
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 1.8e-148 530.0 455 68.6
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 1.8e-148 530.0 461 67.0
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 2.3e-148 529.6 458 67.0
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 6.8e-148 528.1 463 66.3
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 8.9e-148 527.7 462 67.3
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.2e-147 527.3 461 66.6
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.2e-147 527.3 462 68.8
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.5e-147 526.9 455 68.4
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 2.6e-147 526.2 463 67.0
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 2.6e-147 526.2 463 60.0
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 4.4e-147 525.4 466 68.5
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 4.4e-147 525.4 504 58.5
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 5.8e-147 525.0 460 66.5
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 7.5e-147 524.6 464 68.8
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 1.3e-146 523.9 455 67.5
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 1.7e-146 523.5 455 67.9
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 2.2e-146 523.1 461 66.2
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 8.3e-146 521.2 463 66.5
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 4.1e-145 518.8 465 65.8
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.1e-145 518.8 460 65.9
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 4.6e-144 515.4 495 63.4
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 1.7e-143 513.5 385 66.2
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.5e-142 510.4 464 64.4
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.6e-141 506.9 461 66.6
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 2.8e-141 506.1 478 63.6
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 6.2e-141 505.0 385 65.2
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 8.1e-141 504.6 483 62.9
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 3.1e-140 502.7 458 64.4
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 3.1e-140 502.7 385 64.9
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 2.9e-138 496.1 386 64.2
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.4e-137 493.8 464 65.3
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.2e-137 492.7 464 65.1
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 2.7e-136 489.6 465 57.8
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 3.5e-136 489.2 458 62.9
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 7.8e-136 488.0 464 65.3
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 3.0e-135 486.1 385 63.1
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 3.0e-135 486.1 458 64.2
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 8.6e-135 484.6 461 64.9
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.5e-134 483.8 550 56.9
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.3e-134 482.6 461 64.9
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 7.6e-131 471.5 461 62.7
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 2.3e-127 459.9 460 63.5
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 5.1e-127 458.8 462 59.1
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 6.7e-119 431.8 381 68.2
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 2.8e-117 426.4 472 56.6
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 6.2e-117 425.2 469 54.8
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 1.4e-116 424.1 496 57.1
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 3.1e-116 422.9 461 52.7
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 2.6e-115 419.9 462 57.6
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.4e-113 414.1 363 60.9
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 1.6e-112 410.6 384 66.7
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 4.6e-112 409.1 463 54.6
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.5e-94 350.9 299 61.2
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 1.3e-74 284.6 315 54.6
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 5.7e-70 269.2 388 42.5
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 1.4e-68 264.6 289 63.0
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 8.8e-63 245.4 399 38.6
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 5.9e-59 232.6 242 54.1
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 7.2e-57 225.7 189 65.6
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 2.5e-49 200.7 508 37.6
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 4.0e-47 193.4 398 31.7
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 4.1e-44 183.3 161 60.9
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.3e-42 177.6 122 72.1
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 2.0e-38 164.5 512 32.8
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.8e-38 162.9 123 63.4
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 7.3e-33 146.0 162 53.7
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 5.2e-31 139.8 121 62.0
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 7.3e-25 119.4 134 50.7
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 1.1e-20 105.5 68 77.9
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.3e-18 98.6 55 90.9
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 8.1e-16 89.4 59 76.3
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 2.0e-14 84.7 117 47.0
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 2.9e-13 80.9 230 30.4
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 6.4e-13 79.7 90 51.1
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.7e-10 71.6 97 46.4
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 8.7e-10 69.3 49 81.6
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 1.1e-09 68.9 110 41.8
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.9e-09 68.2 59 59.3
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 1.3e-08 65.5 60 53.3
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 1.4e-07 62.0 278 25.9
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 2.0e-06 58.2 60 48.3
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 2.6e-06 57.8 67 44.8
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 2.6e-06 57.8 117 35.9
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 5.8e-06 56.6 62 46.8


User provided reference genes

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