Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0307G016 Amborella trichopoda HOM05D002235 ORTHO05D005799 1.6e-39 165.6 82 100.0
ATR0584G171 Amborella trichopoda HOM05D002235 ORTHO05D005799 1.5e-34 149.1 78 92.3
MBI01_g12898_MAGBIO Magnolia biondii HOM05D002235 ORTHO05D005799 4.6e-31 137.5 76 88.2
GSVIVG01018954001 Vitis vinifera HOM05D002235 ORTHO05D005799 8.7e-30 133.3 76 85.5
CSS0009701 Camellia sinensis var. sinensis HOM05D002235 ORTHO05D005799 1.9e-29 132.1 76 84.2
Dinv36089 Davidia involucrata HOM05D000145 ORTHO05D000115 1.9e-29 132.1 76 84.2
Hma1.2p1_0224F.1_g094620 Hydrangea macrophylla HOM05D002235 ORTHO05D005799 1.9e-29 132.1 76 84.2
Lj4C39T5 Lonicera japonica HOM05D002235 ORTHO05D005799 1.9e-29 132.1 76 84.2
Nn5g29623 Nelumbo nucifera HOM05D002235 ORTHO05D005799 1.9e-29 132.1 76 84.2
Rhsim07G0240400 Rhododendron simsii HOM05D002235 ORTHO05D005799 1.9e-29 132.1 76 84.2
Dinv06515 Davidia involucrata HOM05D002235 ORTHO05D005799 2.5e-29 131.7 76 82.9
ECA233G3712 Erigeron canadensis HOM05D002235 ORTHO05D005799 2.5e-29 131.7 76 84.2
ECA246G1214 Erigeron canadensis HOM05D002235 ORTHO05D005799 2.5e-29 131.7 76 84.2
Lsat_1_v5_gn_8_1221 Lactuca sativa HOM05D002235 ORTHO05D005799 2.5e-29 131.7 76 84.2
Lj2P905T21 Lonicera japonica HOM05D002235 ORTHO05D005799 2.5e-29 131.7 76 82.9
TAR381G0496 Trochodendron aralioides HOM05D002235 ORTHO05D005799 2.5e-29 131.7 76 82.9
TAR625G0888 Trochodendron aralioides HOM05D002235 ORTHO05D005799 2.5e-29 131.7 76 82.9
Rhsim08G0117700 Rhododendron simsii HOM05D002235 ORTHO05D005799 3.3e-29 131.3 76 84.2
PSO017G6094 Papaver somniferum HOM05D002235 ORTHO05D005799 4.3e-29 131.0 76 82.9
PSO675G3787 Papaver somniferum HOM05D002235 ORTHO05D005799 4.3e-29 131.0 76 82.9
vmacro18282 Vaccinium macrocarpon HOM05D002235 ORTHO05D005799 4.3e-29 131.0 76 82.9
Eucgr.H01271 Eucalyptus grandis HOM05D002235 ORTHO05D005799 5.6e-29 130.6 78 80.8
HPP92_026358 Vanilla planifolia HOM05D002235 ORTHO05D005799 5.6e-29 130.6 78 82.1
DCAR_025940 Daucus carota HOM05D002235 ORTHO05D005799 7.3e-29 130.2 76 81.6
HanXRQChr13g0402731 Helianthus annuus HOM05D002235 ORTHO05D005799 7.3e-29 130.2 76 82.9
PSO210G5099 Papaver somniferum HOM05D002235 ORTHO05D005799 9.6e-29 129.8 76 81.6
Aqoxy6G01121 Aquilegia oxysepala HOM05D002235 ORTHO05D005799 1.3e-28 129.4 76 81.6
MSTRG.23525 Avicennia marina HOM05D002235 ORTHO05D005799 1.3e-28 129.4 78 79.5
ClCG01G019570 Citrullus lanatus HOM05D002235 ORTHO05D005799 1.6e-28 129.0 76 81.6
CsaV3_6G046250 Cucumis sativus L. HOM05D002235 ORTHO05D005799 1.6e-28 129.0 76 81.6
Sed0025608 Sechium edule HOM05D002235 ORTHO05D005799 1.6e-28 129.0 76 81.6
Atru.chr3.580 Acer truncatum HOM05D002235 ORTHO05D005799 2.8e-28 128.3 76 81.6
CAN.G358.94 Capsicum annuum HOM05D002235 ORTHO05D005799 2.8e-28 128.3 76 80.3
Cc07_g09520 Coffea canephora HOM05D002235 ORTHO05D005799 2.8e-28 128.3 76 81.6
Haze_25325 Corylus avellana HOM05D002235 ORTHO05D005799 2.8e-28 128.3 76 81.6
Manes.15G096200 Manihot esculenta HOM05D002235 ORTHO05D005799 2.8e-28 128.3 76 81.6
Sc02g0006030 Simmondsia chinensis HOM05D002235 ORTHO05D005799 2.8e-28 128.3 76 82.9
Solyc02g085280.1 Solanum lycopersicum HOM05D002235 ORTHO05D005799 2.8e-28 128.3 76 80.3
Sopen02g029970 Solanum pennellii HOM05D002235 ORTHO05D005799 2.8e-28 128.3 76 80.3
PGSC0003DMG400003504 Solanum tuberosum HOM05D002235 ORTHO05D005799 2.8e-28 128.3 76 80.3
Cfa021431 Carpinus fangiana HOM05D002235 ORTHO05D005799 3.6e-28 127.9 76 80.3
Haze_03086 Corylus avellana HOM05D002235 ORTHO05D005799 3.6e-28 127.9 76 80.3
Lsat_1_v5_gn_9_50621 Lactuca sativa HOM05D002235 ORTHO05D005799 3.6e-28 127.9 76 80.3
MD10G1030300 Malus domestica HOM05D002235 ORTHO05D005799 3.6e-28 127.9 78 79.5
Nitab4.5_0000434g0210 Nicotiana tabacum HOM05D002235 ORTHO05D005799 3.6e-28 127.9 76 80.3
QL06p046214 Quercus lobata HOM05D002235 ORTHO05D005799 3.6e-28 127.9 76 82.9
SGA_v2.0_scaffold111G31410 Striga asiatica HOM05D002235 ORTHO05D005799 3.6e-28 127.9 76 80.3
CiPaw.02G018100 Carya illinoinensis HOM05D002235 ORTHO05D005799 4.8e-28 127.5 76 81.6
TWI09G1408 Tripterygium wilfordii HOM05D002235 ORTHO05D005799 4.8e-28 127.5 76 81.6
Gohir.A09G206400 Gossypium hirsutum HOM05D002235 ORTHO05D005799 6.2e-28 127.1 76 80.3
Nitab4.5_0001323g0110 Nicotiana tabacum HOM05D002235 ORTHO05D005799 6.2e-28 127.1 76 80.3
Nitab4.5_0002927g0020 Nicotiana tabacum HOM05D002235 ORTHO05D005799 6.2e-28 127.1 76 80.3
Oeu033800.1 Olea europaea HOM05D002235 ORTHO05D005799 6.2e-28 127.1 76 80.3
Thecc.04G195100 Theobroma cacao HOM05D002235 ORTHO05D005799 6.2e-28 127.1 76 80.3
MELO3C007828.2 Cucumis melo HOM05D002235 ORTHO05D005799 8.1e-28 126.7 76 80.3
Duzib212G0763 Durio zibethinus HOM05D002235 ORTHO05D005799 8.1e-28 126.7 76 78.9
Migut.H00992 Erythranthe guttata HOM05D002235 ORTHO05D005799 8.1e-28 126.7 76 81.6
Migut.M00148 Erythranthe guttata HOM05D002235 ORTHO05D005799 8.1e-28 126.7 76 81.6
Glyma.06G239200 Glycine max HOM05D002235 ORTHO05D005799 8.1e-28 126.7 76 80.3
Nitab4.5_0001385g0100 Nicotiana tabacum HOM05D002235 ORTHO05D005799 8.1e-28 126.7 76 78.9
PGR044G0255 Punica granatum HOM05D002235 ORTHO05D005799 1.4e-27 125.9 76 80.3
Duzib212G0828 Durio zibethinus HOM05D002235 ORTHO05D005799 1.8e-27 125.6 76 78.9
Potri.007G024900 Populus trichocarpa HOM05D002235 ORTHO05D005799 1.8e-27 125.6 76 80.3
QL02p021739 Quercus lobata HOM05D002235 ORTHO05D005799 1.8e-27 125.6 76 81.6
RcHm_v2.0_Chr6g0274821 Rosa chinensis HOM05D002235 ORTHO05D005799 1.8e-27 125.6 76 78.9
Sabra07G0022000 Salix brachista HOM05D002235 ORTHO05D005799 1.8e-27 125.6 76 80.3
SalBow5G5593 Salvia bowleyana HOM05D002235 ORTHO05D005799 1.8e-27 125.6 76 80.3
COL.COLO4_20230 Corchorus olitorius HOM05D002235 ORTHO05D005799 2.4e-27 125.2 76 78.9
Glyma.20G193100 Glycine max HOM05D002235 ORTHO05D005799 2.4e-27 125.2 76 78.9
Glyma.10G197100 Glycine max HOM05D002235 ORTHO05D005799 3.1e-27 124.8 76 78.9
Gorai.006G223700 Gossypium raimondii HOM05D002235 ORTHO05D005799 3.1e-27 124.8 76 78.9
RcHm_v2.0_Chr7g0241841 Rosa chinensis HOM05D002235 ORTHO05D005799 3.1e-27 124.8 76 78.9
unitig_748.g8520 Utricularia gibba HOM05D002235 ORTHO05D005799 3.1e-27 124.8 76 81.6
CANSAT35G1638 Cannabis sativa HOM05D002235 ORTHO05D005799 4.0e-27 124.4 76 78.9
Cpa.g.sc903.1 Carica papaya HOM05D002235 ORTHO05D005799 4.0e-27 124.4 76 78.9
Oeu042402.1 Olea europaea HOM05D002235 ORTHO05D005799 4.0e-27 124.4 76 77.6
Lj2g0003011 Lotus japonicus HOM05D002235 ORTHO05D005799 5.3e-27 124.0 76 77.6
Lj6g0007153 Lotus japonicus HOM05D002235 ORTHO05D005799 5.3e-27 124.0 76 77.6
Prupe.7G092200 Prunus persica HOM05D002235 ORTHO05D005799 5.3e-27 124.0 76 78.9
SHI22885 Sapria himalayana HOM05D002235 ORTHO05D005799 5.3e-27 124.0 76 76.3
CiPaw.01G039500 Carya illinoinensis HOM05D002235 ORTHO05D005799 6.9e-27 123.6 76 80.3
Gohir.D09G200000 Gossypium hirsutum HOM05D002235 ORTHO05D005799 6.9e-27 123.6 76 77.6
Phvul.007G139500 Phaseolus vulgaris HOM05D002235 ORTHO05D005799 6.9e-27 123.6 76 77.6
THA.LOC109117197 Tarenaya hassleriana HOM05D002235 ORTHO05D005799 6.9e-27 123.6 76 77.6
VMungo0720G2086 Vigna mungo HOM05D002235 ORTHO05D005799 6.9e-27 123.6 76 78.9
Duzib151G0490 Durio zibethinus HOM05D002235 ORTHO05D005799 9.0e-27 123.2 76 77.6
AL3G51680 Arabidopsis lyrata HOM05D002235 ORTHO05D005799 1.2e-26 122.9 76 77.6
AT2G18400 Arabidopsis thaliana HOM05D002235 ORTHO05D005799 1.2e-26 122.9 76 77.6
Carub.0003s3255 Capsella rubella HOM05D002235 ORTHO05D005799 1.2e-26 122.9 76 77.6
TWI73G0456 Tripterygium wilfordii HOM05D002235 ORTHO05D005799 1.2e-26 122.9 76 78.9
Medtr1g090700 Medicago truncatula HOM05D002235 ORTHO05D005799 1.5e-26 122.5 76 76.3
Psat6g053600 Pisum sativum HOM05D002235 ORTHO05D005799 1.5e-26 122.5 76 76.3
Psat6g172680 Pisum sativum HOM05D002235 ORTHO05D005799 1.5e-26 122.5 76 76.3
TPR.G34817 Trifolium pratense HOM05D002235 ORTHO05D005799 1.5e-26 122.5 76 76.3
Ca_10444_v3 Cicer arietinum L. HOM05D006212 ORTHO05D008245 2.0e-26 122.1 76 76.3
FvH4_5g39530 Fragaria vesca HOM05D002235 ORTHO05D005799 2.0e-26 122.1 76 76.3
FAN18G0133 Fragaria x ananassa HOM05D002235 ORTHO05D005799 2.0e-26 122.1 76 76.3
FAN18G2999 Fragaria x ananassa HOM05D002235 ORTHO05D005799 2.0e-26 122.1 76 76.3
CDE05G3036 Ceratophyllum demersum HOM05D000163 ORTHO05D000219 3.4e-26 121.3 74 78.4
FvH4_2g13340 Fragaria vesca HOM05D002235 ORTHO05D005799 3.4e-26 121.3 76 76.3
FAN08G1141 Fragaria x ananassa HOM05D002235 ORTHO05D005799 3.4e-26 121.3 76 76.3
FAN15G2152 Fragaria x ananassa HOM05D002235 ORTHO05D005799 3.4e-26 121.3 76 76.3
FAN20G0632 Fragaria x ananassa HOM05D002235 ORTHO05D005799 3.4e-26 121.3 76 76.3
FAN27G3347 Fragaria x ananassa HOM05D002235 ORTHO05D005799 3.4e-26 121.3 76 76.3
Medtr1g077690 Medicago truncatula HOM05D002235 ORTHO05D005799 3.4e-26 121.3 76 75.0
TPR.G37795 Trifolium pratense HOM05D002235 ORTHO05D005799 3.4e-26 121.3 76 75.0
Aa31LG8G15630 Aethionema arabicum HOM05D002235 ORTHO05D005799 4.5e-26 120.9 76 76.3
BcaB03g16642 Brassica carinata HOM05D002235 ORTHO05D005799 4.5e-26 120.9 76 76.3
BcaC01g06895 Brassica carinata HOM05D002235 ORTHO05D005799 4.5e-26 120.9 76 76.3
BcaC06g36406 Brassica carinata HOM05D002235 ORTHO05D005799 4.5e-26 120.9 76 76.3
A06p33230 Brassica napus HOM05D002235 ORTHO05D005799 4.5e-26 120.9 76 76.3
A07p02340 Brassica napus HOM05D002235 ORTHO05D005799 4.5e-26 120.9 76 76.3
C07p04460 Brassica napus HOM05D002235 ORTHO05D005799 4.5e-26 120.9 76 76.3
BolC3t18178H Brassica oleracea HOM05D002235 ORTHO05D005799 4.5e-26 120.9 76 76.3
BolC7t40841H Brassica oleracea HOM05D002235 ORTHO05D005799 4.5e-26 120.9 76 76.3
BraA06t26254Z Brassica rapa HOM05D002235 ORTHO05D005799 4.5e-26 120.9 76 76.3
BraA07t28025Z Brassica rapa HOM05D002235 ORTHO05D005799 4.5e-26 120.9 76 76.3
Thhalv10022927m.g Eutrema salsugineum HOM05D002235 ORTHO05D005799 4.5e-26 120.9 76 76.3
C03p59220 Brassica napus HOM05D002235 ORTHO05D005799 5.8e-26 120.6 76 75.0
Peaxi162Scf00751g00024 Petunia axillaris HOM05D002235 ORTHO05D005799 5.8e-26 120.6 76 73.7
Peaxi162Scf00941g00017 Petunia axillaris HOM05D002235 ORTHO05D005799 5.8e-26 120.6 76 76.3
CARHR109000 Cardamine hirsuta HOM05D002235 ORTHO05D005799 7.6e-26 120.2 76 75.0
Lsat_1_v5_gn_1_45121 Lactuca sativa HOM05D002235 ORTHO05D005799 7.6e-26 120.2 76 76.3
Lalb_Chr06g0169911 Lupinus albus HOM05D002235 ORTHO05D005799 7.6e-26 120.2 76 76.3
Sp3g31810 Schrenkiella parvula HOM05D002235 ORTHO05D005799 1.7e-25 119.0 76 75.0
SpUn0030_0020 Schrenkiella parvula HOM05D002235 ORTHO05D005799 1.7e-25 119.0 76 75.0
Nitab4.5_0003232g0050 Nicotiana tabacum HOM05D002235 ORTHO05D005799 2.9e-25 118.2 75 74.7
Ciclev10017281m.g Citrus clementina HOM05D002235 ORTHO05D005799 3.8e-25 117.9 76 73.7
FAN24G1704 Fragaria x ananassa HOM05D002235 ORTHO05D005799 3.8e-25 117.9 76 75.0
TAR626G0470 Trochodendron aralioides HOM05D002235 ORTHO05D005799 3.8e-25 117.9 76 75.0
Lalb_Chr21g0312921 Lupinus albus HOM05D002235 ORTHO05D005799 4.9e-25 117.5 76 73.7
CAN.G760.13 Capsicum annuum HOM05D002235 ORTHO05D005799 8.4e-25 116.7 76 76.3
Lsat_1_v5_gn_6_22200 Lactuca sativa HOM05D002235 ORTHO05D005799 8.4e-25 116.7 76 76.3
THA.LOC109116243 Tarenaya hassleriana HOM05D002235 ORTHO05D005799 2.4e-24 115.2 73 75.3
Os03g0725000 Oryza sativa ssp. japonica HOM05D002235 ORTHO05D005799 3.2e-24 114.8 76 72.4
Os08g0484301 Oryza sativa ssp. japonica HOM05D002235 ORTHO05D005799 7.1e-24 113.6 76 72.4
Ah.08g210610 Amaranthus hybridus HOM05D000444 ORTHO05D000489 7.9e-23 110.2 76 67.1
AUR62028534 Chenopodium quinoa HOM05D002235 ORTHO05D005799 7.9e-23 110.2 76 69.7
AUR62008275 Chenopodium quinoa HOM05D002235 ORTHO05D005799 6.7e-22 107.1 76 68.4
AUR62031034 Chenopodium quinoa HOM05D002235 ORTHO05D005799 1.1e-21 106.3 76 67.1
EL10Ac3g05244 Beta vulgaris HOM05D002235 ORTHO05D005799 1.5e-21 105.9 76 67.1
EL10Ac7g16923 Beta vulgaris HOM05D002235 ORTHO05D005799 1.5e-21 105.9 76 67.1
Mapoly0252s0007 Marchantia polymorpha HOM05D002235 ORTHO05D005799 2.1e-20 102.1 76 61.8
vmacro04531 Vaccinium macrocarpon HOM05D002235 ORTHO05D005799 4.8e-20 100.9 58 82.8
AUR62008274 Chenopodium quinoa HOM05D002235 ORTHO05D005799 1.4e-19 99.4 76 64.5
Mapoly0157s0015 Marchantia polymorpha HOM05D002235 ORTHO05D005799 1.5e-18 95.9 73 60.3
MD05G1029600 Malus domestica HOM05D002235 ORTHO05D005799 2.1e-15 85.5 51 78.4
FAN04G2216 Fragaria x ananassa HOM05D002235 ORTHO05D005799 3.0e-14 81.6 51 72.5
Aqoxy5G01622 Aquilegia oxysepala HOM05D002235 ORTHO05D005799 6.5e-09 63.9 76 51.3
Ciclev10030364m.g Citrus clementina HOM05D002235 ORTHO05D005799 1.1e-08 63.2 79 49.4
Sc12g0000430 Simmondsia chinensis HOM05D002235 ORTHO05D005799 9.3e-08 60.1 37 73.0
Pp3c2_23440 Physcomitrium patens HOM05D002235 ORTHO05D005799 2.7e-07 58.5 62 45.2


User provided reference genes

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