Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0304G027 Amborella trichopoda HOM05D006497 ORTHO05D008263 7.0e-66 253.8 130 100.0
ATR0749G075 Amborella trichopoda HOM05D006497 ORTHO05D008263 1.7e-59 232.6 130 93.1
Thecc.09G049300 Theobroma cacao HOM05D006497 ORTHO05D008263 5.8e-36 154.5 127 63.8
Hma1.2p1_0049F.1_g028230 Hydrangea macrophylla HOM05D006497 ORTHO05D008263 1.1e-34 150.2 114 66.7
PSO210G2909 Papaver somniferum HOM05D006497 ORTHO05D008263 1.2e-33 146.7 100 72.0
CSS0028638 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.6e-33 146.4 109 67.9
Gorai.001G024500 Gossypium raimondii HOM05D006497 ORTHO05D008263 1.6e-33 146.4 127 60.6
Duzib168G0301 Durio zibethinus HOM05D006497 ORTHO05D008263 2.1e-33 146.0 128 60.2
Gohir.A07G022176 Gossypium hirsutum HOM05D006497 ORTHO05D008263 2.7e-33 145.6 129 58.1
QL12p040844 Quercus lobata HOM05D006497 ORTHO05D008263 2.7e-33 145.6 128 60.2
COL.COLO4_21011 Corchorus olitorius HOM05D006497 ORTHO05D008263 6.0e-33 144.4 129 58.9
Potri.018G058200 Populus trichocarpa HOM05D006497 ORTHO05D008263 6.0e-33 144.4 97 70.1
Nitab4.5_0002021g0040 Nicotiana tabacum HOM05D006497 ORTHO05D008263 7.8e-33 144.1 127 61.4
Actinidia18207 Actinidia chinensis HOM05D006497 ORTHO05D008263 1.0e-32 143.7 97 73.2
CSS0007660 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.0e-32 143.7 109 67.0
CSS0049899 Camellia sinensis var. sinensis HOM05D006497 ORTHO05D008263 1.0e-32 143.7 109 67.0
Nitab4.5_0000318g0100 Nicotiana tabacum HOM05D006497 ORTHO05D008263 1.3e-32 143.3 127 60.6
Peaxi162Scf00840g00427 Petunia axillaris HOM05D006497 ORTHO05D008263 1.3e-32 143.3 100 72.0
TAR636G3582 Trochodendron aralioides HOM05D006497 ORTHO05D008263 2.3e-32 142.5 95 74.7
Cpa.g.sc27.217 Carica papaya HOM05D006497 ORTHO05D008263 3.0e-32 142.1 128 60.2
EL10Ac2g03958 Beta vulgaris HOM05D006497 ORTHO05D008263 5.1e-32 141.4 95 71.6
PSO210G1815 Papaver somniferum HOM05D006497 ORTHO05D008263 5.1e-32 141.4 122 61.5
Sc09g0009540 Simmondsia chinensis HOM05D006497 ORTHO05D008263 5.1e-32 141.4 109 67.0
GSVIVG01035327001 Vitis vinifera HOM05D006497 ORTHO05D008263 5.1e-32 141.4 121 58.7
CANSAT54G2618 Cannabis sativa HOM05D006497 ORTHO05D008263 1.5e-31 139.8 97 68.0
CiPaw.08G027800 Carya illinoinensis HOM05D006497 ORTHO05D008263 1.5e-31 139.8 97 73.2
SalBow1G7152 Salvia bowleyana HOM05D006497 ORTHO05D008263 1.5e-31 139.8 129 57.4
Atru.chr7.2042 Acer truncatum HOM05D006497 ORTHO05D008263 1.9e-31 139.4 132 59.1
CDE10G1018 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 1.9e-31 139.4 119 59.7
Cc08_g10030 Coffea canephora HOM05D006497 ORTHO05D008263 1.9e-31 139.4 104 65.4
Nn8g39006 Nelumbo nucifera HOM05D006497 ORTHO05D008263 2.5e-31 139.0 95 74.7
Sopen07g031330 Solanum pennellii HOM05D006497 ORTHO05D008263 3.3e-31 138.7 132 58.3
PGSC0003DMG400012416 Solanum tuberosum HOM05D006497 ORTHO05D008263 3.3e-31 138.7 132 58.3
Prupe.1G443400 Prunus persica HOM05D006497 ORTHO05D008263 7.3e-31 137.5 99 68.7
Solyc07g063140.1 Solanum lycopersicum HOM05D006497 ORTHO05D008263 7.3e-31 137.5 132 57.6
Ah.10g034670 Amaranthus hybridus HOM05D006497 ORTHO05D008263 9.5e-31 137.1 123 61.0
Haze_01965 Corylus avellana HOM05D006497 ORTHO05D008263 9.5e-31 137.1 104 70.2
Cfa005390 Carpinus fangiana HOM05D006497 ORTHO05D008263 1.2e-30 136.7 126 59.5
AUR62040211 Chenopodium quinoa HOM05D006497 ORTHO05D008263 1.2e-30 136.7 135 55.6
Migut.E01547 Erythranthe guttata HOM05D006497 ORTHO05D008263 1.2e-30 136.7 97 67.0
Sabra18G0054600 Salix brachista HOM05D006497 ORTHO05D008263 1.2e-30 136.7 116 58.6
Rhsim05G0006000 Rhododendron simsii HOM05D006497 ORTHO05D008263 1.6e-30 136.3 128 58.6
Aqoxy6G00985 Aquilegia oxysepala HOM05D006497 ORTHO05D008263 2.1e-30 136.0 122 60.7
CDE10G0177 Ceratophyllum demersum HOM05D006497 ORTHO05D008263 2.1e-30 136.0 129 55.8
Eucgr.C00622 Eucalyptus grandis HOM05D006497 ORTHO05D008263 2.1e-30 136.0 122 59.8
MELO3C003479.2 Cucumis melo HOM05D006497 ORTHO05D008263 3.6e-30 135.2 123 56.9
MD08G1108800 Malus domestica HOM05D006497 ORTHO05D008263 3.6e-30 135.2 96 68.8
RcHm_v2.0_Chr6g0306821 Rosa chinensis HOM05D006497 ORTHO05D008263 3.6e-30 135.2 100 68.0
ClCG11G014990 Citrullus lanatus HOM05D006497 ORTHO05D008263 4.7e-30 134.8 97 68.0
ECA246G5018 Erigeron canadensis HOM05D006497 ORTHO05D008263 8.1e-30 134.0 94 70.2
FAN15G0473 Fragaria x ananassa HOM05D006497 ORTHO05D008263 8.1e-30 134.0 120 57.5
Nn8g40951 Nelumbo nucifera HOM05D006497 ORTHO05D008263 8.1e-30 134.0 108 68.5
PGR031G1870 Punica granatum HOM05D006497 ORTHO05D008263 1.1e-29 133.7 97 69.1
MSTRG.11681 Avicennia marina HOM05D006497 ORTHO05D008263 1.4e-29 133.3 125 58.4
FvH4_2g35131 Fragaria vesca HOM05D006497 ORTHO05D008263 3.1e-29 132.1 112 62.5
Ciclev10009788m.g Citrus clementina HOM05D006497 ORTHO05D008263 5.2e-29 131.3 97 67.0
CsaV3_3G048400 Cucumis sativus L. HOM05D006497 ORTHO05D008263 5.2e-29 131.3 123 56.1
unitig_32.g11478 Utricularia gibba HOM05D006497 ORTHO05D008263 5.2e-29 131.3 94 66.0
AUR62009213 Chenopodium quinoa HOM05D006497 ORTHO05D008263 6.8e-29 131.0 109 62.4
Os03g0651000 Oryza sativa ssp. japonica HOM05D006497 ORTHO05D008263 1.2e-28 130.2 97 61.9
Migut.A00169 Erythranthe guttata HOM05D006497 ORTHO05D008263 1.5e-28 129.8 111 56.8
SEGI_35319 Sequoiadendron giganteum HOM05D006497 ORTHO05D008263 2.0e-28 129.4 120 55.8
CAN.G162.59 Capsicum annuum HOM05D006497 ORTHO05D008263 2.6e-28 129.0 100 65.0
DCAR_003057 Daucus carota HOM05D006497 ORTHO05D008263 2.6e-28 129.0 95 67.4
Ca_10596_v3 Cicer arietinum L. HOM05D006497 ORTHO05D008263 3.4e-28 128.6 122 56.6
Sp7g30690 Schrenkiella parvula HOM05D006497 ORTHO05D008263 3.4e-28 128.6 129 55.0
TPR.G11934 Trifolium pratense HOM05D006497 ORTHO05D008263 4.4e-28 128.3 110 59.1
HPP92_013944 Vanilla planifolia HOM05D006497 ORTHO05D008263 4.4e-28 128.3 110 55.5
Lsat_1_v5_gn_3_27161 Lactuca sativa HOM05D006497 ORTHO05D008263 5.8e-28 127.9 94 68.1
THA.LOC104803742 Tarenaya hassleriana HOM05D006497 ORTHO05D008263 5.8e-28 127.9 100 61.0
arahy.Tifrunner.gnm1.ann1.E0CW41 Arachis hypogaea HOM05D006497 ORTHO05D008263 1.3e-27 126.7 108 57.4
A08p17840 Brassica napus HOM05D006497 ORTHO05D008263 2.2e-27 125.9 128 53.1
Sed0009640 Sechium edule HOM05D006497 ORTHO05D008263 2.2e-27 125.9 97 62.9
C03p86910 Brassica napus HOM05D006497 ORTHO05D008263 2.9e-27 125.6 129 53.5
BolC3t20984H Brassica oleracea HOM05D006497 ORTHO05D008263 2.9e-27 125.6 129 53.5
Thhalv10026449m.g Eutrema salsugineum HOM05D006497 ORTHO05D008263 2.9e-27 125.6 129 52.7
Zm00001eb218450 Zea mays HOM05D006497 ORTHO05D008263 2.9e-27 125.6 97 60.8
arahy.Tifrunner.gnm1.ann1.0Y6FKJ Arachis hypogaea HOM05D006497 ORTHO05D008263 3.7e-27 125.2 108 56.5
BcaB03g12770 Brassica carinata HOM05D006497 ORTHO05D008263 3.7e-27 125.2 123 52.8
Lalb_Chr06g0162131 Lupinus albus HOM05D006497 ORTHO05D008263 3.7e-27 125.2 102 57.8
Sed0025405 Sechium edule HOM05D006497 ORTHO05D008263 3.7e-27 125.2 97 62.9
Glyma.10G214200 Glycine max HOM05D006497 ORTHO05D008263 6.4e-27 124.4 127 49.6
BraA08t33734Z Brassica rapa HOM05D006497 ORTHO05D008263 8.3e-27 124.0 128 52.3
Psat6g186080 Pisum sativum HOM05D006497 ORTHO05D008263 1.1e-26 123.6 125 53.6
TPR.G1790 Trifolium pratense HOM05D006497 ORTHO05D008263 3.2e-26 122.1 97 60.8
Medtr1g095920 Medicago truncatula HOM05D006497 ORTHO05D008263 4.1e-26 121.7 125 52.0
Phvul.007G091500 Phaseolus vulgaris HOM05D006497 ORTHO05D008263 4.1e-26 121.7 126 49.2
SGA_v2.0_scaffold163G38048 Striga asiatica HOM05D006497 ORTHO05D008263 7.1e-26 120.9 190 41.1
Glyma.20G177400 Glycine max HOM05D006497 ORTHO05D008263 1.6e-25 119.8 127 48.0
Lj5g0021165 Lotus japonicus HOM05D006497 ORTHO05D008263 1.6e-25 119.8 129 48.1
Carub.0007s0757 Capsella rubella HOM05D006497 ORTHO05D008263 2.1e-25 119.4 110 53.6
VMungo0720G1877 Vigna mungo HOM05D006497 ORTHO05D008263 2.1e-25 119.4 126 48.4
AT4G32915 Arabidopsis thaliana HOM05D006497 ORTHO05D008263 6.0e-25 117.9 110 52.7
AL7G18780 Arabidopsis lyrata HOM05D006497 ORTHO05D008263 1.0e-24 117.1 106 53.8
Oeu011793.1 Olea europaea HOM05D006497 ORTHO05D008263 1.3e-24 116.7 122 50.8
Aa31LG2G18050 Aethionema arabicum HOM05D006497 ORTHO05D008263 3.9e-24 115.2 93 61.3
BolC7t46384H Brassica oleracea HOM05D006497 ORTHO05D008263 8.6e-24 114.0 94 58.5
BcaNung02143 Brassica carinata HOM05D006497 ORTHO05D008263 1.1e-23 113.6 128 50.0
CARHR240920 Cardamine hirsuta HOM05D006497 ORTHO05D008263 1.5e-23 113.2 131 48.1
Hund19485 Selenicereus undatus HOM05D006497 ORTHO05D008263 1.5e-23 113.2 158 44.3
A03p61670 Brassica napus HOM05D006497 ORTHO05D008263 1.9e-23 112.8 94 58.5
BraA03t15206Z Brassica rapa HOM05D006497 ORTHO05D008263 1.9e-23 112.8 94 58.5
C07p59400 Brassica napus HOM05D006497 ORTHO05D008263 3.3e-23 112.1 94 58.5
Mapoly0154s0030 Marchantia polymorpha HOM05D006497 ORTHO05D008263 6.8e-21 104.4 103 50.5
SGA_v2.0_scaffold169G38673 Striga asiatica HOM05D006497 ORTHO05D008263 1.2e-20 103.6 108 52.8
TWI32G0413 Tripterygium wilfordii HOM05D006497 ORTHO05D008263 4.2e-18 95.1 70 67.1
HanXRQChr17g0538891 Helianthus annuus HOM05D006497 ORTHO05D008263 2.1e-17 92.8 70 64.3
MBI13_g05466_MAGBIO Magnolia biondii HOM05D006497 ORTHO05D008263 2.7e-17 92.4 63 69.8
FAN27G1249 Fragaria x ananassa HOM05D006497 ORTHO05D008263 3.5e-17 92.0 100 54.0
Pp3c2_33430 Physcomitrium patens HOM05D006497 ORTHO05D008263 7.8e-17 90.9 108 39.8
SMO146G0150 Selaginella moellendorffii HOM05D006497 ORTHO05D008263 1.0e-16 90.5 96 44.8
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 1.7e-16 89.7 187 32.6
Dinv27945 Davidia involucrata HOM05D006497 ORTHO05D008263 5.1e-16 88.2 55 72.7
vmacro08276 Vaccinium macrocarpon HOM05D006497 ORTHO05D008263 6.6e-16 87.8 62 71.0
CBR_g31997 Chara braunii HOM05D006497 ORTHO05D008263 2.5e-15 85.9 99 43.4
Manes.03G057500 Manihot esculenta HOM05D006497 ORTHO05D008263 1.6e-14 83.2 84 52.4
Gohir.D07G023800 Gossypium hirsutum HOM05D006497 ORTHO05D008263 8.1e-14 80.9 77 54.5
Cre08.g364650 Chlamydomonas reinhardtii HOM05D001184 ORTHO05D007940 4.9e-11 71.6 88 37.5
MCO07G547 Micromonas commoda HOM05D001184 ORTHO05D007940 7.1e-10 67.8 96 40.6
PRCOL_00005999 Prasinoderma coloniale HOM05D006497 ORTHO05D008263 6.0e-09 64.7 96 33.3
Rhsim07G0144900 Rhododendron simsii HOM05D006497 ORTHO05D008263 2.8e-06 55.8 43 69.8


User provided reference genes

Program Settings