Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0301G001 Amborella trichopoda HOM05D000037 ORTHO05D019553 1.8e-37 158.7 78 100.0
ATR0860G001 Amborella trichopoda HOM05D000037 ORTHO05D019553 2.0e-36 155.2 78 97.4
Nn2g14509 Nelumbo nucifera HOM05D000037 ORTHO05D000608 1.7e-14 82.4 79 51.9
ATR0322G039 Amborella trichopoda HOM05D000037 ORTHO05D000608 2.0e-12 75.5 77 46.8
ATR0322G024 Amborella trichopoda HOM05D000037 ORTHO05D019553 2.9e-11 71.6 77 49.4
Actinidia06070 Actinidia chinensis HOM05D004526 ORTHO05D005548 5.6e-10 67.4 78 42.3
PSO591G0424 Papaver somniferum HOM05D000037 ORTHO05D000608 5.6e-10 67.4 78 44.9
Eucgr.C02788 Eucalyptus grandis HOM05D000037 ORTHO05D000608 7.3e-10 67.0 75 46.7
Atru.chr7.2409 Acer truncatum HOM05D000037 ORTHO05D000608 1.6e-09 65.9 75 41.3
Gohir.D09G020300 Gossypium hirsutum HOM05D000037 ORTHO05D000608 1.6e-09 65.9 78 44.9
Gohir.D09G020600 Gossypium hirsutum HOM05D000037 ORTHO05D000608 1.6e-09 65.9 78 44.9
PSO832G1492 Papaver somniferum HOM05D000037 ORTHO05D000608 1.6e-09 65.9 78 44.9
Potri.015G088600 Populus trichocarpa HOM05D000037 ORTHO05D000608 1.6e-09 65.9 82 46.3
TAR622G0275 Trochodendron aralioides HOM05D004526 ORTHO05D005548 2.8e-09 65.1 79 43.0
Gorai.006G023900 Gossypium raimondii HOM05D000037 ORTHO05D000608 3.6e-09 64.7 77 44.2
Sabra15G0111500 Salix brachista HOM05D000037 ORTHO05D000608 3.6e-09 64.7 81 44.4
ATR0322G003 Amborella trichopoda HOM05D000037 ORTHO05D000608 4.7e-09 64.3 76 44.7
TPR.G15655 Trifolium pratense HOM05D000037 ORTHO05D000608 4.7e-09 64.3 74 40.5
GSVIVG01008061001 Vitis vinifera HOM05D000037 ORTHO05D000608 8.0e-09 63.5 75 42.7
Peaxi162Scf00038g02248 Petunia axillaris HOM05D000037 ORTHO05D000608 1.4e-08 62.8 76 43.4
Eucgr.C01172 Eucalyptus grandis HOM05D000037 ORTHO05D000608 1.8e-08 62.4 76 53.9
MBI01_g47381_MAGBIO Magnolia biondii HOM05D000753 ORTHO05D001988 1.8e-08 62.4 78 42.3
TAR383G0648 Trochodendron aralioides HOM05D000037 ORTHO05D000608 1.8e-08 62.4 79 46.8
HPP92_003779 Vanilla planifolia HOM05D000037 ORTHO05D000608 1.8e-08 62.4 77 44.2
HPP92_003782 Vanilla planifolia HOM05D000037 ORTHO05D000608 1.8e-08 62.4 77 44.2
HPP92_003857 Vanilla planifolia HOM05D000037 ORTHO05D000608 1.8e-08 62.4 77 44.2
Aqoxy7G03709 Aquilegia oxysepala HOM05D000037 ORTHO05D000608 2.3e-08 62.0 77 45.5
Thecc.04G205900 Theobroma cacao HOM05D000037 ORTHO05D000608 2.3e-08 62.0 79 43.0
Eucgr.C02787 Eucalyptus grandis HOM05D000037 ORTHO05D000608 3.1e-08 61.6 75 42.7
Peaxi162Scf00157g01528 Petunia axillaris HOM05D000037 ORTHO05D000608 3.1e-08 61.6 77 46.8
ATR0580G374 Amborella trichopoda HOM05D000037 ORTHO05D000648 4.0e-08 61.2 79 43.0
Gohir.A09G020800 Gossypium hirsutum HOM05D000037 ORTHO05D000608 4.0e-08 61.2 78 42.3
Nn2g12020 Nelumbo nucifera HOM05D000037 ORTHO05D000608 4.0e-08 61.2 77 45.5
TWI18G1337 Tripterygium wilfordii HOM05D000037 ORTHO05D000608 4.0e-08 61.2 78 38.5
Ca_12938_v3 Cicer arietinum L. HOM05D000037 ORTHO05D000608 5.2e-08 60.8 77 33.8
Gohir.D09G020500 Gossypium hirsutum HOM05D000037 ORTHO05D000608 5.2e-08 60.8 77 42.9
Medtr1g013740 Medicago truncatula HOM05D000037 ORTHO05D000608 5.2e-08 60.8 75 38.7
PSO832G4096 Papaver somniferum HOM05D000037 ORTHO05D000608 6.8e-08 60.5 78 39.7
PGR031G3715 Punica granatum HOM05D000037 ORTHO05D000608 6.8e-08 60.5 71 50.7
SEGI_14241 Sequoiadendron giganteum HOM05D000037 ORTHO05D000648 6.8e-08 60.5 73 43.8
PSO017G5901 Papaver somniferum HOM05D000037 ORTHO05D000608 8.9e-08 60.1 76 39.5
Potri.001G463000 Populus trichocarpa HOM05D000037 ORTHO05D000648 1.2e-07 59.7 78 42.3
Dinv09856 Davidia involucrata HOM05D000037 ORTHO05D000608 1.5e-07 59.3 77 42.9
Eucgr.C02785 Eucalyptus grandis HOM05D000037 ORTHO05D000608 1.5e-07 59.3 75 44.0
Sed0012424 Sechium edule HOM05D000037 ORTHO05D000608 2.0e-07 58.9 75 38.7
SMO347G0110 Selaginella moellendorffii HOM05D000037 ORTHO05D000648 2.0e-07 58.9 72 48.6
Hund09126 Selenicereus undatus HOM05D000037 ORTHO05D000608 2.0e-07 58.9 73 45.2
TWI63G0420 Tripterygium wilfordii HOM05D000037 ORTHO05D000608 2.6e-07 58.5 78 46.2
Ciclev10027074m.g Citrus clementina HOM05D000037 ORTHO05D000608 3.4e-07 58.2 77 39.0
Hma1.2p1_0322F.1_g125040 Hydrangea macrophylla HOM05D000037 ORTHO05D019553 3.4e-07 58.2 77 39.0
A07p26550 Brassica napus HOM05D000037 ORTHO05D000648 4.4e-07 57.8 80 46.2
BraA07t30298Z Brassica rapa HOM05D000037 ORTHO05D000648 4.4e-07 57.8 80 46.2
Cpa.g.sc259.7 Carica papaya HOM05D000037 ORTHO05D000608 4.4e-07 57.8 76 40.8
Eucgr.H02555 Eucalyptus grandis HOM05D000037 ORTHO05D000648 4.4e-07 57.8 78 42.3
Gorai.006G024400 Gossypium raimondii HOM05D000037 ORTHO05D000608 4.4e-07 57.8 73 42.5
HanXRQChr08g0208671 Helianthus annuus HOM05D000037 ORTHO05D000648 4.4e-07 57.8 78 38.5
PSO063G3132 Papaver somniferum HOM05D000037 ORTHO05D000608 4.4e-07 57.8 76 38.2
Phvul.001G266200 Phaseolus vulgaris HOM05D000037 ORTHO05D000608 4.4e-07 57.8 79 41.8
Atru.chr7.1807 Acer truncatum HOM05D000037 ORTHO05D000608 5.8e-07 57.4 78 38.5
Medtr1g012390 Medicago truncatula HOM05D000037 ORTHO05D000608 5.8e-07 57.4 74 35.1
Medtr8g010070 Medicago truncatula HOM05D000037 ORTHO05D000608 5.8e-07 57.4 75 38.7
Sc04g0002430 Simmondsia chinensis HOM05D000037 ORTHO05D000608 5.8e-07 57.4 79 39.2
COL.COLO4_20254 Corchorus olitorius HOM05D000037 ORTHO05D000608 7.5e-07 57.0 76 43.4
Manes.04G114650 Manihot esculenta HOM05D000037 ORTHO05D000608 7.5e-07 57.0 78 41.0
COL.COLO4_24198 Corchorus olitorius HOM05D000037 ORTHO05D000648 9.8e-07 56.6 78 42.3
Manes.03G015800 Manihot esculenta HOM05D000037 ORTHO05D000608 9.8e-07 56.6 75 36.0
Peaxi162Scf00073g00718 Petunia axillaris HOM05D000037 ORTHO05D000608 9.8e-07 56.6 77 41.6
Sabra12G0089200 Salix brachista HOM05D000037 ORTHO05D000608 9.8e-07 56.6 75 44.0
vmacro05735 Vaccinium macrocarpon HOM05D000037 ORTHO05D000608 9.8e-07 56.6 78 46.2
ClCG10G010400 Citrullus lanatus HOM05D000037 ORTHO05D000608 1.3e-06 56.2 75 38.7
Dinv09854 Davidia involucrata HOM05D000037 ORTHO05D000608 1.3e-06 56.2 77 40.3
MBI01_g40021_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010414 1.3e-06 56.2 75 41.3
MBI04_g08014_MAGBIO Magnolia biondii HOM05D000037 ORTHO05D000608 1.3e-06 56.2 75 45.3
Medtr8g010050 Medicago truncatula HOM05D000037 ORTHO05D000608 1.3e-06 56.2 76 36.8
Nitab4.5_0008357g0010 Nicotiana tabacum HOM05D000037 ORTHO05D000608 1.3e-06 56.2 76 42.1
Prupe.4G149100 Prunus persica HOM05D000037 ORTHO05D000150 1.3e-06 56.2 77 44.2
THA.LOC104805443 Tarenaya hassleriana HOM05D000037 ORTHO05D000608 1.3e-06 56.2 83 36.1
BcaC08g45295 Brassica carinata HOM05D000037 ORTHO05D000648 1.7e-06 55.8 80 45.0
C06p28970 Brassica napus HOM05D000037 ORTHO05D000648 1.7e-06 55.8 80 45.0
BolC6t38063H Brassica oleracea HOM05D000037 ORTHO05D000648 1.7e-06 55.8 80 45.0
Carub.0004s2640 Capsella rubella HOM05D000037 ORTHO05D000419 1.7e-06 55.8 76 44.7
Cpa.g.sc37.67 Carica papaya HOM05D000037 ORTHO05D000608 1.7e-06 55.8 81 39.5
ClCG05G025430 Citrullus lanatus HOM05D000037 ORTHO05D000648 1.7e-06 55.8 78 42.3
ClCG07G017300 Citrullus lanatus HOM05D000037 ORTHO05D000608 1.7e-06 55.8 75 41.3
MELO3C017617.2 Cucumis melo HOM05D000037 ORTHO05D000608 1.7e-06 55.8 74 40.5
CsaV3_5G031470 Cucumis sativus L. HOM05D000037 ORTHO05D000648 1.7e-06 55.8 78 42.3
FvH4_6g35100 Fragaria vesca HOM05D000037 ORTHO05D000608 1.7e-06 55.8 78 43.6
FAN14G0096 Fragaria x ananassa HOM05D000037 ORTHO05D000608 1.7e-06 55.8 78 43.6
Gorai.006G024200 Gossypium raimondii HOM05D000037 ORTHO05D000608 1.7e-06 55.8 70 41.4
Lsat_1_v5_gn_1_74120 Lactuca sativa HOM05D000037 ORTHO05D000419 1.7e-06 55.8 71 42.3
Lj1g0019389 Lotus japonicus HOM05D000037 ORTHO05D000608 1.7e-06 55.8 73 41.1
Lalb_Chr04g0260951 Lupinus albus HOM05D000037 ORTHO05D000608 1.7e-06 55.8 78 38.5
Nitab4.5_0010254g0060 Nicotiana tabacum HOM05D000037 ORTHO05D000648 1.7e-06 55.8 78 42.3
Nitab4.5_0013988g0030 Nicotiana tabacum HOM05D000037 ORTHO05D014733 1.7e-06 55.8 66 45.5
PGR142G2890 Punica granatum HOM05D000037 ORTHO05D000608 1.7e-06 55.8 76 48.7
TPR.G17818 Trifolium pratense HOM05D000037 ORTHO05D000608 1.7e-06 55.8 74 39.2
CSS0027191 Camellia sinensis var. sinensis HOM05D000037 ORTHO05D000608 2.2e-06 55.5 77 42.9
MELO3C011986.2 Cucumis melo HOM05D000037 ORTHO05D000648 2.2e-06 55.5 78 41.0
ECA233G0031 Erigeron canadensis HOM05D000037 ORTHO05D000648 2.2e-06 55.5 78 39.7
ECA246G2014 Erigeron canadensis HOM05D000037 ORTHO05D000648 2.2e-06 55.5 77 40.3
MBI05_g07850_MAGBIO Magnolia biondii HOM05D000037 ORTHO05D000608 2.2e-06 55.5 77 42.9
Nitab4.5_0003197g0010 Nicotiana tabacum HOM05D000037 ORTHO05D000419 2.2e-06 55.5 77 45.5
QL03p020337 Quercus lobata HOM05D000037 ORTHO05D000608 2.2e-06 55.5 69 42.0
QL05p030787 Quercus lobata HOM05D000037 ORTHO05D000608 2.2e-06 55.5 69 42.0
vmacro16230 Vaccinium macrocarpon HOM05D000037 ORTHO05D000648 2.2e-06 55.5 78 38.5
CiPaw.11G157100 Carya illinoinensis HOM05D000037 ORTHO05D000608 2.9e-06 55.1 76 38.2
Duzib251G0845 Durio zibethinus HOM05D000037 ORTHO05D000648 2.9e-06 55.1 78 41.0
GSVIVG01017302001 Vitis vinifera HOM05D000037 ORTHO05D000608 2.9e-06 55.1 77 44.2
Cfa019538 Carpinus fangiana HOM05D000037 ORTHO05D000150 3.7e-06 54.7 77 42.9
MD00G1141800 Malus domestica HOM05D000037 ORTHO05D000608 3.7e-06 54.7 76 42.1
Nitab4.5_0001764g0010 Nicotiana tabacum HOM05D000037 ORTHO05D000648 3.7e-06 54.7 78 41.0
PSO017G4106 Papaver somniferum HOM05D000037 ORTHO05D000648 3.7e-06 54.7 77 41.6
PSO732G0209 Papaver somniferum HOM05D000037 ORTHO05D000419 3.7e-06 54.7 78 39.7
unitig_736.g22472 Utricularia gibba HOM05D000037 ORTHO05D000419 3.7e-06 54.7 72 44.4
BcaB01g03354 Brassica carinata HOM05D000037 ORTHO05D000419 4.9e-06 54.3 76 39.5
BcaC01g05208 Brassica carinata HOM05D000037 ORTHO05D000419 4.9e-06 54.3 76 39.5
A03p24550 Brassica napus HOM05D000037 ORTHO05D000419 4.9e-06 54.3 76 39.5
C03p29290 Brassica napus HOM05D000037 ORTHO05D000419 4.9e-06 54.3 76 39.5
BolC3t15275H Brassica oleracea HOM05D000037 ORTHO05D000419 4.9e-06 54.3 76 39.5
BraA03t11662Z Brassica rapa HOM05D000037 ORTHO05D000419 4.9e-06 54.3 76 39.5
CSS0035158 Camellia sinensis var. sinensis HOM05D000037 ORTHO05D000419 4.9e-06 54.3 72 40.3
CSS0042608 Camellia sinensis var. sinensis HOM05D000037 ORTHO05D000419 4.9e-06 54.3 72 40.3
CAN.G1591.10 Capsicum annuum HOM05D000037 ORTHO05D000608 4.9e-06 54.3 78 42.3
CiPaw.11G156600 Carya illinoinensis HOM05D000037 ORTHO05D000608 4.9e-06 54.3 76 38.2
CiPaw.11G156800 Carya illinoinensis HOM05D000037 ORTHO05D000608 4.9e-06 54.3 76 38.2
Glyma.15G008900 Glycine max HOM05D000037 ORTHO05D000608 4.9e-06 54.3 78 47.4
HanXRQChr01g0023701 Helianthus annuus HOM05D000037 ORTHO05D000419 4.9e-06 54.3 71 39.4
MD00G1022500 Malus domestica HOM05D000037 ORTHO05D014733 4.9e-06 54.3 77 39.0
PSO675G3390 Papaver somniferum HOM05D000037 ORTHO05D000419 4.9e-06 54.3 78 41.0
SalBow7G2224 Salvia bowleyana HOM05D000037 ORTHO05D000648 4.9e-06 54.3 76 40.8
SGA_v2.0_scaffold19G08936 Striga asiatica HOM05D000037 ORTHO05D000648 4.9e-06 54.3 76 39.5
ATR0332G106 Amborella trichopoda HOM05D000037 ORTHO05D000648 6.4e-06 53.9 76 39.5
CANSAT35G1790 Cannabis sativa HOM05D000037 ORTHO05D000608 6.4e-06 53.9 76 44.7
CsaV3_4G004500 Cucumis sativus L. HOM05D000037 ORTHO05D000608 6.4e-06 53.9 74 39.2
Lj3g0005190 Lotus japonicus HOM05D000037 ORTHO05D000608 6.4e-06 53.9 75 37.3
MBI07_g46095_MAGBIO Magnolia biondii HOM05D000037 ORTHO05D000150 6.4e-06 53.9 74 48.6
Medtr1g013730 Medicago truncatula HOM05D000037 ORTHO05D000608 6.4e-06 53.9 75 34.7
Nn2g13879 Nelumbo nucifera HOM05D000037 ORTHO05D000608 6.4e-06 53.9 76 40.8
PSO732G0371 Papaver somniferum HOM05D000037 ORTHO05D000419 6.4e-06 53.9 78 39.7
Prupe.7G242600 Prunus persica HOM05D000037 ORTHO05D000608 6.4e-06 53.9 76 43.4
QL08p029029 Quercus lobata HOM05D000037 ORTHO05D000150 6.4e-06 53.9 72 41.7
Sed0002813 Sechium edule HOM05D000037 ORTHO05D000608 6.4e-06 53.9 74 36.5
vmacro01160 Vaccinium macrocarpon HOM05D000037 ORTHO05D000648 6.4e-06 53.9 78 42.3
BcaB06g29347 Brassica carinata HOM05D000037 ORTHO05D000419 8.3e-06 53.5 76 42.1
CANSAT35G0127 Cannabis sativa HOM05D000037 ORTHO05D000648 8.3e-06 53.5 78 41.0
Cc04_g04140 Coffea canephora HOM05D000037 ORTHO05D000648 8.3e-06 53.5 78 39.7
DCAR_023414 Daucus carota HOM05D000037 ORTHO05D000150 8.3e-06 53.5 75 38.7
Gohir.A09G021201 Gossypium hirsutum HOM05D000037 ORTHO05D000608 8.3e-06 53.5 91 38.5
Lj3g0021316 Lotus japonicus HOM05D000037 ORTHO05D000608 8.3e-06 53.5 75 37.3
Nn1g09487 Nelumbo nucifera HOM05D000037 ORTHO05D000419 8.3e-06 53.5 71 42.3
Peaxi162Scf00046g00171 Petunia axillaris HOM05D000037 ORTHO05D000419 8.3e-06 53.5 71 45.1
Phvul.005G177000 Phaseolus vulgaris HOM05D000037 ORTHO05D000608 8.3e-06 53.5 78 47.4
Prupe.6G155200 Prunus persica HOM05D000037 ORTHO05D000608 8.3e-06 53.5 77 37.7
Prupe.7G040000 Prunus persica HOM05D000037 ORTHO05D000608 8.3e-06 53.5 77 37.7
RcHm_v2.0_Chr4g0399361 Rosa chinensis HOM05D000037 ORTHO05D346277 8.3e-06 53.5 77 37.7
SEGI_16398 Sequoiadendron giganteum HOM05D000037 ORTHO05D000648 8.3e-06 53.5 78 39.7
VMungo1080G1343 Vigna mungo HOM05D000037 ORTHO05D000608 8.3e-06 53.5 78 47.4


User provided reference genes

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