Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0284G002 Amborella trichopoda HOM05D009246 ORTHO05D011192 1.5e-49 199.1 94 100.0
ATR0661G360 Amborella trichopoda HOM05D009246 ORTHO05D011192 4.6e-35 151.0 93 78.5
ATR0564G504 Amborella trichopoda HOM05D009246 ORTHO05D011192 2.3e-34 148.7 93 75.3
ATR0564G426 Amborella trichopoda HOM05D009246 ORTHO05D011192 8.7e-34 146.7 93 74.2
ATR0697G233 Amborella trichopoda HOM05D009246 ORTHO05D011192 4.9e-29 131.0 81 75.3
ATR0215G009 Amborella trichopoda HOM05D009246 ORTHO05D011192 4.6e-27 124.4 72 80.6
ATR0326G007 Amborella trichopoda HOM05D009246 ORTHO05D011192 3.9e-26 121.3 84 67.9
ATR0217G028 Amborella trichopoda HOM05D009246 ORTHO05D011192 1.9e-25 119.0 89 67.4
ATR0752G113 Amborella trichopoda HOM05D009246 ORTHO05D011192 6.2e-24 114.0 71 77.5
ATR0794G097 Amborella trichopoda HOM05D009246 ORTHO05D011192 4.5e-22 107.8 73 67.1
ATR0929G006 Amborella trichopoda HOM05D009246 ORTHO05D011192 1.3e-18 96.3 57 75.4
ATR0827G151 Amborella trichopoda HOM05D009246 ORTHO05D011192 3.9e-18 94.7 58 72.4
ATR0624G090 Amborella trichopoda HOM05D009246 ORTHO05D011192 4.3e-17 91.3 79 54.4
ATR0721G083 Amborella trichopoda HOM05D009246 ORTHO05D011192 3.8e-13 78.2 58 62.1
ATR0807G051 Amborella trichopoda HOM05D000665 ORTHO05D011192 4.6e-11 71.2 74 41.9
ATR1098G111 Amborella trichopoda HOM05D000665 ORTHO05D011192 6.1e-11 70.9 78 42.3
ATR0923G003 Amborella trichopoda HOM05D009246 ORTHO05D011192 5.1e-10 67.8 70 40.0
MD15G1042400 Malus domestica HOM05D000665 ORTHO05D000140 3.7e-08 61.6 92 35.9
Nn3g19280 Nelumbo nucifera HOM05D000665 ORTHO05D000140 4.8e-08 61.2 102 33.3
GSVIVG01024053001 Vitis vinifera HOM05D000665 ORTHO05D000140 6.3e-08 60.8 81 33.3
QL03p004820 Quercus lobata HOM05D000665 ORTHO05D000140 1.1e-07 60.1 87 33.3
COL.COLO4_13504 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.4e-07 59.7 87 34.5
Cpa.g.sc48.26 Carica papaya HOM05D000665 ORTHO05D000140 1.8e-07 59.3 82 35.4
QL03p004678 Quercus lobata HOM05D000665 ORTHO05D000140 1.8e-07 59.3 87 32.2
Thecc.05G306300 Theobroma cacao HOM05D000665 ORTHO05D000140 1.8e-07 59.3 87 31.0
CiPaw.05G079800 Carya illinoinensis HOM05D000665 ORTHO05D000140 4.1e-07 58.2 81 32.1
Atru.chr5.3284 Acer truncatum HOM05D000665 ORTHO05D000140 5.3e-07 57.8 81 33.3
CANSAT25G2307 Cannabis sativa HOM05D000665 ORTHO05D000140 5.3e-07 57.8 81 30.9
Duzib132G1144 Durio zibethinus HOM05D000665 ORTHO05D000140 5.3e-07 57.8 81 33.3
Nn2g14028 Nelumbo nucifera HOM05D000665 ORTHO05D000140 5.3e-07 57.8 80 35.0
Oeu021910.1 Olea europaea HOM05D000665 ORTHO05D000140 5.3e-07 57.8 87 36.8
CSS0011103 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000140 6.9e-07 57.4 86 32.6
Lj7C473G5 Lonicera japonica HOM05D000665 ORTHO05D000140 6.9e-07 57.4 64 40.6
Os02g0813200 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 6.9e-07 57.4 66 34.8
Manes.11G096000 Manihot esculenta HOM05D000665 ORTHO05D000140 9.1e-07 57.0 81 32.1
Potri.004G172900 Populus trichocarpa HOM05D000665 ORTHO05D000140 9.1e-07 57.0 81 33.3
ATR0307G075 Amborella trichopoda HOM05D001680 ORTHO05D001596 1.2e-06 56.6 55 40.0
CANSAT54G2806 Cannabis sativa HOM05D000665 ORTHO05D000140 1.2e-06 56.6 79 32.9
CiPaw.15G145500 Carya illinoinensis HOM05D000665 ORTHO05D000140 1.2e-06 56.6 89 30.3
Manes.08G122600 Manihot esculenta HOM05D000665 ORTHO05D000140 1.2e-06 56.6 87 29.9
Manes.16G131100 Manihot esculenta HOM05D000665 ORTHO05D000140 1.2e-06 56.6 83 33.7
Os06g0595700 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 1.2e-06 56.6 66 34.8
TAR383G0921 Trochodendron aralioides HOM05D000665 ORTHO05D000140 1.2e-06 56.6 78 35.9
ATR0752G047 Amborella trichopoda HOM05D009246 ORTHO05D011192 1.5e-06 56.2 49 57.1
COL.COLO4_23291 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.5e-06 56.2 65 40.0
Dinv10284 Davidia involucrata HOM05D000665 ORTHO05D000140 1.5e-06 56.2 80 35.0
Gohir.A08G211400 Gossypium hirsutum HOM05D000665 ORTHO05D000140 1.5e-06 56.2 84 33.3
Gorai.004G242300 Gossypium raimondii HOM05D000665 ORTHO05D000140 1.5e-06 56.2 84 33.3
Lj2A1201T49 Lonicera japonica HOM05D000665 ORTHO05D000140 1.5e-06 56.2 85 31.8
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 2.0e-06 55.8 86 36.0
Potri.006G265900 Populus trichocarpa HOM05D000665 ORTHO05D000140 2.0e-06 55.8 89 31.5
Haze_02167 Corylus avellana HOM05D000665 ORTHO05D000140 2.6e-06 55.5 81 32.1
CsaV3_4G036440 Cucumis sativus L. HOM05D000665 ORTHO05D000140 2.6e-06 55.5 97 33.0
Lj7C736T17 Lonicera japonica HOM05D000665 ORTHO05D000140 2.6e-06 55.5 87 31.0
PSO223G0043 Papaver somniferum HOM05D000665 ORTHO05D000140 2.6e-06 55.5 67 34.3
QL02p018541 Quercus lobata HOM05D000665 ORTHO05D000140 2.6e-06 55.5 80 35.0
Thecc.02G063400 Theobroma cacao HOM05D000665 ORTHO05D000140 2.6e-06 55.5 81 34.6
Dinv15837 Davidia involucrata HOM05D000665 ORTHO05D000140 3.4e-06 55.1 93 32.3
QL11p049281 Quercus lobata HOM05D000665 ORTHO05D000140 3.4e-06 55.1 81 30.9
GSVIVG01000025001 Vitis vinifera HOM05D000665 ORTHO05D000140 3.4e-06 55.1 64 42.2
ATR0585G101 Amborella trichopoda HOM05D000665 ORTHO05D000140 4.5e-06 54.7 64 40.6
Cpa.g.sc148.33 Carica papaya HOM05D000665 ORTHO05D000140 4.5e-06 54.7 80 33.8
COL.COLO4_17303 Corchorus olitorius HOM05D000665 ORTHO05D000140 4.5e-06 54.7 81 32.1
Dinv04945 Davidia involucrata HOM05D000665 ORTHO05D000140 4.5e-06 54.7 71 32.4
Dinv33085 Davidia involucrata HOM05D000665 ORTHO05D000140 4.5e-06 54.7 65 36.9
MBI08_g09798_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 4.5e-06 54.7 86 36.0
Nn1g01996 Nelumbo nucifera HOM05D000665 ORTHO05D000140 4.5e-06 54.7 63 39.7
Potri.013G025200 Populus trichocarpa HOM05D000665 ORTHO05D000140 4.5e-06 54.7 87 31.0
ATR0724G093 Amborella trichopoda HOM05D000665 ORTHO05D011192 5.9e-06 54.3 67 34.3
MBI15_g44991_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000140 5.9e-06 54.3 86 36.0
Os01g0894050 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 5.9e-06 54.3 65 35.4
Os05g0218001 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 5.9e-06 54.3 65 35.4
Os12g0299650 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 5.9e-06 54.3 65 35.4
Sabra06G0208500 Salix brachista HOM05D000665 ORTHO05D000140 5.9e-06 54.3 89 31.5
Sed0002116 Sechium edule HOM05D000665 ORTHO05D000140 5.9e-06 54.3 65 40.0
TWI34G1677 Tripterygium wilfordii HOM05D000665 ORTHO05D000140 5.9e-06 54.3 86 30.2
MSTRG.25827 Avicennia marina HOM05D000665 ORTHO05D000140 7.7e-06 53.9 87 27.6
CSS0030989 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000140 7.7e-06 53.9 65 35.4
Cpa.g.sc37.168 Carica papaya HOM05D000665 ORTHO05D000140 7.7e-06 53.9 64 37.5
Ciclev10028943m.g Citrus clementina HOM05D000665 ORTHO05D000140 7.7e-06 53.9 78 32.1
COL.COLO4_18963 Corchorus olitorius HOM05D000665 ORTHO05D000140 7.7e-06 53.9 74 36.5
Gohir.D01G157200 Gossypium hirsutum HOM05D000665 ORTHO05D000140 7.7e-06 53.9 64 35.9
Gohir.D08G228200 Gossypium hirsutum HOM05D000665 ORTHO05D000140 7.7e-06 53.9 66 39.4
Gorai.002G195300 Gossypium raimondii HOM05D000665 ORTHO05D000140 7.7e-06 53.9 64 35.9
Hma1.2p1_0979F.1_g243550 Hydrangea macrophylla HOM05D000665 ORTHO05D000140 7.7e-06 53.9 64 34.4
Os06g0481800 Oryza sativa ssp. japonica HOM05D007295 ORTHO05D007705 7.7e-06 53.9 65 35.4
Thecc.09G014200 Theobroma cacao HOM05D000665 ORTHO05D000140 7.7e-06 53.9 74 33.8


User provided reference genes

Program Settings